Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

52178549 .. 52180120

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0420200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTAGTTTAAGAAGCATTTTGTACTTAGCAACTGTGTTTTGCTGCTTGTTTGAGCAGAGCTTTTCTTTTAATCCGAAGCACTTGAACTTGTCACTCAGCGCCACCCATTGGGACACTGCCGGAGCTACCTGGTACGGCAGCCCTGATGGTTTTGGAAGTGACGGTGGGTCTTGTGGGTATGGAGATGTAGTTTCACAAGCTCCATTCTCTTCCATGGTTACGGCAGTAGGTCCTTCTCTTTACAAATCCGGCAGGGAATGTGGAGCTTGCTATCAGATCAAATGTACCAAACATAAATCTTGTTCCGGCAAACCAGTAAGGGTGGTCATCACAGATTCTTGCCCTGGAGGGCCTTGTGCGTCCGATGCTGCACATTTTGACCTTAGTGGAACTTCATTTGGTGCCATGGCACTTCCTGGTCAAGGCGAGGAACTCCGCAATGCAGGAGTATTGGAAATCCAATTTGCACGCGTGGCATGTGATTATGCGGGAAAAACCATTGCATTCCACGTGGACCAGGGATCGAACTCGAACTACTTTGCTGCTGTGATCGAGTATGAAGAGGGAGATGGTGATCTTGGTAGTGTTGAGTTGAAGGACGCTTCCTCAACGGACAGTGAAGGTGGCGAGGAGTGGCGTGCAATGCAACAATCTTGGGGTGCAGTGTGGAAACTTGATGCAGGGTCAGCGCTACATCCTCCATTGTCAATAAAGTTGACTTCTGAGTACTCAGGCCAGACCTTGTTGGCTAAAAATGTGATTCCAAATGGGTGGCAACCTGGTGCTACCTACAGATCCGTGGTCAATTTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

272

Amino Acids

28.82

Weight (kDa)

5.08

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	41 - 162	7.6e-06	EXPB1-like domain 1
DPBB_1	PF03330	76 - 155	1.4e-17	Lytic transglycolase
Expansin_C	PF01357	168 - 256	1.3e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccII	CGCG	1 cut(s)	474
AciI	CCGC	2 cut(s)	439, 491
AclWI	GGATC	2 cut(s)	532, 792
AcvI	CACGTG	1 cut(s)	514
AfaI	GTAC	4 cut(s)	26, 137, 289, 731
AfeI	AGCGCT	1 cut(s)	693
AfiI	CCNNNNNNNGG	2 cut(s)	111, 425
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	88, 598
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	5 cut(s)	131, 346, 418, 519, 781
AluBI	AGCT	4 cut(s)	63, 128, 203, 269
AluI	AGCT	4 cut(s)	63, 128, 203, 269
AlwI	GGATC	2 cut(s)	532, 792
Aor51HI	AGCGCT	1 cut(s)	693
AoxI	GGCC	2 cut(s)	353, 736
ApeKI	GCWGC	4 cut(s)	45, 141, 371, 545
AspLEI	GCGC	2 cut(s)	104, 694
AspS9I	GGNCC	3 cut(s)	233, 353, 517
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	233, 517
BanI	GGYRCC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	514
BbvI	GCAGC	4 cut(s)	32, 153, 358, 532
BccI	CCATC	2 cut(s)	143, 566
BceAI	ACGGC	2 cut(s)	154, 240
BciT130I	CCWGG	5 cut(s)	133, 348, 420, 521, 783
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	793
BfoI	RGCGCY	2 cut(s)	105, 695
BisI	GCNGC	4 cut(s)	46, 142, 372, 546
BlsI	GCNGC	4 cut(s)	47, 143, 373, 547
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	5 cut(s)	133, 348, 420, 521, 783
Bme18I	GGWCC	2 cut(s)	233, 517
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	233, 353, 517
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	5 cut(s)	133, 348, 420, 521, 783
BmsI	GCATC	2 cut(s)	358, 670
BpmI	CTGGAG	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	5 cut(s)	216, 346, 408, 520, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 425
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	3 cut(s)	448, 501, 651
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	5 cut(s)	133, 348, 420, 521, 783
BseDI	CCNNGG	5 cut(s)	216, 346, 408, 520, 801
BseGI	GGATG	1 cut(s)	697
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	2 cut(s)	111, 425
BseMI	GCAATG	3 cut(s)	448, 501, 651
BseMII	CTCAG	3 cut(s)	112, 717, 747
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	4 cut(s)	32, 153, 358, 532
BsgI	GTGCAG	2 cut(s)	357, 684
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	2 cut(s)	355, 738
BshNI	GGYRCC	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	123, 252, 309
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	111, 425
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	355, 738
Bsp143I	GATC	5 cut(s)	279, 524, 552, 577, 797
Bsp19I	CCATGG	2 cut(s)	216, 408
BspACI	CCGC	2 cut(s)	439, 491
BspANI	GGCC	2 cut(s)	355, 738
BspCNI	CTCAG	3 cut(s)	111, 718, 746
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	532, 792
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	3 cut(s)	448, 501, 651
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	5 cut(s)	216, 346, 408, 520, 801
BssMI	GATC	5 cut(s)	279, 524, 552, 577, 797
BssT1I	CCWWGG	2 cut(s)	216, 408
Bst2UI	CCWGG	5 cut(s)	133, 348, 420, 521, 783
Bst4CI	ACNGT	3 cut(s)	37, 167, 620
Bst6I	CTCTTC	2 cut(s)	217, 558
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	271, 472, 642
BstDEI	CTNAG	5 cut(s)	28, 98, 386, 726, 733
BstDSI	CCRYGG	3 cut(s)	216, 408, 801
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	697
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	2 cut(s)	105, 695
BstHHI	GCGC	2 cut(s)	104, 694
BstKTI	GATC	5 cut(s)	282, 527, 555, 580, 800
BstMBI	GATC	5 cut(s)	279, 524, 552, 577, 797
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
BstNI	CCWGG	5 cut(s)	133, 348, 420, 521, 783
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	5 cut(s)	131, 346, 418, 519, 781
BstSFI	CTRYAG	1 cut(s)	793
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	4 cut(s)	32, 153, 358, 532
BstX2I	RGATCY	1 cut(s)	797
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstYI	RGATCY	1 cut(s)	797
BsuRI	GGCC	2 cut(s)	355, 738
BtgI	CCRYGG	3 cut(s)	216, 408, 801
BtsCI	GGATG	1 cut(s)	697
BtsI	GCAGTG	2 cut(s)	117, 672
BtsIMutI	CAGTG	3 cut(s)	117, 625, 672
Cac8I	GCNNGC	3 cut(s)	271, 472, 642
CfoI	GCGC	2 cut(s)	104, 694
Cfr13I	GGNCC	3 cut(s)	233, 353, 517
CseI	GACGC	2 cut(s)	351, 611
CsiI	ACCWGGT	2 cut(s)	131, 781
Csp6I	GTAC	4 cut(s)	25, 136, 288, 730
CviAII	CATG	3 cut(s)	217, 409, 480
CviJI	RGCY	9 cut(s)	5, 63, 128, 144, 203, 269, 355, 738, 752
CviKI_1	RGCY	9 cut(s)	5, 63, 128, 144, 203, 269, 355, 738, 752
CviQI	GTAC	4 cut(s)	25, 136, 288, 730
DdeI	CTNAG	5 cut(s)	28, 98, 386, 726, 733
DpnI	GATC	5 cut(s)	281, 526, 554, 579, 799
DpnII	GATC	5 cut(s)	279, 524, 552, 577, 797
DriI	GACNNNNNGTC	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	217, 558
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EarI	CTCTTC	2 cut(s)	217, 558
Eco130I	CCWWGG	2 cut(s)	216, 408
Eco47I	GGWCC	2 cut(s)	233, 517
Eco47III	AGCGCT	1 cut(s)	693
Eco72I	CACGTG	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	2 cut(s)	233, 353
EcoRII	CCWGG	5 cut(s)	131, 346, 418, 519, 781
EcoT14I	CCWWGG	2 cut(s)	216, 408
ErhI	CCWWGG	2 cut(s)	216, 408
FaeI	CATG	3 cut(s)	220, 412, 483
FaiI	YATR	8 cut(s)	183, 218, 297, 410, 481, 489, 561, 817
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	216, 408, 479
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	46, 142, 372, 546
FokI	GGATG	1 cut(s)	684
Fsp4HI	GCNGC	4 cut(s)	46, 142, 372, 546
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	103, 693
GluI	GCNGC	4 cut(s)	46, 142, 372, 546
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	2 cut(s)	105, 695
HaeIII	GGCC	2 cut(s)	355, 738
HapII	CCGG	3 cut(s)	123, 252, 309
HgaI	GACGC	2 cut(s)	351, 611
HhaI	GCGC	2 cut(s)	104, 694
Hin1II	CATG	3 cut(s)	220, 412, 483
Hin6I	GCGC	2 cut(s)	102, 692
HinP1I	GCGC	2 cut(s)	102, 692
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	2 cut(s)	338, 763
HpaII	CCGG	3 cut(s)	123, 252, 309
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	517, 720
Hpy188I	TCNGA	4 cut(s)	78, 279, 367, 727
Hpy8I	GTNNAC	2 cut(s)	517, 720
HpyAV	CCTTC	3 cut(s)	246, 592, 617
HpyCH4III	ACNGT	3 cut(s)	37, 167, 620
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	8 cut(s)	374, 446, 470, 506, 644, 649, 665, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
HpyF3I	CTNAG	5 cut(s)	28, 98, 386, 726, 733
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	3 cut(s)	220, 412, 483
HspAI	GCGC	2 cut(s)	102, 692
Kzo9I	GATC	5 cut(s)	279, 524, 552, 577, 797
LmnI	GCTCC	3 cut(s)	125, 208, 266
Lsp1109I	GCAGC	4 cut(s)	32, 153, 358, 532
LweI	GCATC	2 cut(s)	358, 670
MabI	ACCWGGT	2 cut(s)	131, 781
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	93, 161, 220
MalI	GATC	5 cut(s)	281, 526, 554, 579, 799
MboI	GATC	5 cut(s)	279, 524, 552, 577, 797
MboII	GAAGA	2 cut(s)	204, 575
MflI	RGATCY	1 cut(s)	797
MluCI	AATT	2 cut(s)	464, 808
MluI	ACGCGT	1 cut(s)	472
MnlI	CCTC	6 cut(s)	344, 424, 559, 619, 625, 711
MseI	TTAA	2 cut(s)	11, 72
MspI	CCGG	3 cut(s)	123, 252, 309
MspR9I	CCNGG	5 cut(s)	133, 348, 420, 521, 783
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	5 cut(s)	133, 348, 420, 521, 783
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
NcoI	CCATGG	2 cut(s)	216, 408
NdeII	GATC	5 cut(s)	279, 524, 552, 577, 797
NlaIII	CATG	3 cut(s)	220, 412, 483
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	93, 161
NspI	RCATGY	1 cut(s)	483
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	338, 763
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	47, 143, 373, 547
PmaCI	CACGTG	1 cut(s)	514
PmlI	CACGTG	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	5 cut(s)	131, 346, 418, 519, 781
PspCI	CACGTG	1 cut(s)	514
PspGI	CCWGG	5 cut(s)	131, 346, 418, 519, 781
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	3 cut(s)	233, 353, 517
PspPPI	RGGWCCY	1 cut(s)	233
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
PsuI	RGATCY	1 cut(s)	797
RsaI	GTAC	4 cut(s)	26, 137, 289, 731
RsaNI	GTAC	4 cut(s)	25, 136, 288, 730
SaqAI	TTAA	2 cut(s)	11, 72
SatI	GCNGC	4 cut(s)	46, 142, 372, 546
Sau3AI	GATC	5 cut(s)	279, 524, 552, 577, 797
Sau96I	GGNCC	3 cut(s)	233, 353, 517
ScaI	AGTACT	1 cut(s)	731
ScrFI	CCNGG	5 cut(s)	133, 348, 420, 521, 783
SexAI	ACCWGGT	2 cut(s)	131, 781
SfaNI	GCATC	2 cut(s)	358, 670
SfcI	CTRYAG	1 cut(s)	793
SinI	GGWCC	2 cut(s)	233, 517
Sse9I	AATT	2 cut(s)	464, 808
SsiI	CCGC	2 cut(s)	439, 491
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	5 cut(s)	131, 346, 418, 519, 781
StyI	CCWWGG	2 cut(s)	216, 408
TaaI	ACNGT	3 cut(s)	37, 167, 620
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	527, 533, 555
TasI	AATT	2 cut(s)	464, 808
TatI	WGTACW	2 cut(s)	24, 729
TfiI	GAWTC	2 cut(s)	338, 763
Tru1I	TTAA	2 cut(s)	11, 72
Tru9I	TTAA	2 cut(s)	11, 72
TscAI	CASTG	3 cut(s)	124, 625, 672
TseFI	GTSAC	2 cut(s)	93, 161
TseI	GCWGC	4 cut(s)	45, 141, 371, 545
Tsp45I	GTSAC	2 cut(s)	93, 161
TspDTI	ATGAA	2 cut(s)	387, 576
TspGWI	ACGGA	2 cut(s)	629, 790
TspRI	CASTG	3 cut(s)	124, 625, 672
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	233, 517
XagI	CCTNNNNNAGG	1 cut(s)	423
XceI	RCATGY	1 cut(s)	483
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.