Rorug03G0098300

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
7698296 .. 7701951
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0098300.1

Sequence Viewer

Length: 1236 bp
ATGGACAGAACTAGTTTTCTGGCGGTGTTCTTATTGCTCTTCATCGTTTCCGATGTCGCCAATGCTTCGATGCTCACCAAGCATAGATTTTTGATCGGTGATCCTCCGAAGGGCAATTCGGACAATCCCACATTACCGCCAGTTGATGATGGGAAGAACAAAACGGGCTCTGCCCCACCCGCCAAGACGCCGAAGACGCCGGACCCGAATCCGGAGCCGAAAGGTTCAAATAACAGTACTCAACCGGCTCCGGTAGGTCCACCAACTGATACCGGTGGTGGGAAGAATAACCAAACACAGAAGCAGGATCCAAATCCTGAGCAGAAGCCGAAGGAGAAACCAACTCCAGAGCCTGAAAAGAAGCCAAAGGAGAATCCGACTCCGGAGCCTGAGCAGAAGCCGAAGGAGAATCCAACTCCGGAGCCTGAGCAAAAGCCGAAGGAAAATCCAACTCCAGAGCCTGAGCAGAAGCCGAAGGAGAATCCAACTCCGGAGCCTGGCAAGACACCGGAAGAGGATCCGAGTGCAAAGACTCCAGAAATAGAGAAGACTAAGAATAAAAGTGACAATGTGACTAATACACCGAATGTGAAAAAAGAAAGCTGCGATGGGGTAATCAAGACGTGCAGCACTACGGATATGATTGCCTGCATTAAGAGCTTCAATAGGGAATCAACAGAAGCAGTCATTCTGGTCCAAAATGTACGCGACAGCGCATTGAACGGAAGCCTTTCTGCAGAAGATACCAGGGACCTGGTGATACTCAAACACGAATATAAAAAGATCAAGCTCAATATGGGTAAAAGCAACAAAATAGTACTAAAAGGGGGAAATGGAGAGTGCGTGCTTCAGATGGACCCTTTTGTATCTGAAGGAAACCTTTTCATGCGTTTCCCTTCTTATGAGAAGTTAGTGACGCCAATCAATGGTGCATACTTCTTGATTGTTACAGTGCTAATTTTTGGAGGGATGTGGGTTTGCTGCCTGGTTAGGAGGAGGAAACAGCGCACTGGAGGTGGAGTTCCTTATCAGGAACTTGAAATGGCATTGCCGGAATCGGCTTCAGCAACTGATGTGGTTACGGCAGAAGGTTGGGATCAGGGTTGGGATGATGATTGGGATGGAGATAATGCAGTGAAGTCACCTGGAGGGCATCTGGTGGGAAGCATATCTGCTAATGGTCTTACTGCAAGGTCTTTGAACAAAGATGGGTGGGAAAATAACTGGGATGATTAG

Protein Analysis

411

Amino Acids

44.87

Weight (kDa)

5.31

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 196 - 287 4.3e-19 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 926
AccII CGCG 1 cut(s) 708
AccIII TCCGGA 4 cut(s) 211, 382, 418, 490
AciI CCGC 3 cut(s) 23, 137, 180
AclWI GGATC 6 cut(s) 95, 302, 315, 512, 525, 1104
AcuI CTGAAG 3 cut(s) 833, 891, 1047
AcyI GRCGYC 3 cut(s) 188, 197, 917
AfaI GTAC 3 cut(s) 238, 705, 819
AfiI CCNNNNNNNGG 5 cut(s) 110, 211, 279, 497, 926
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 5 cut(s) 228, 664, 721, 1040, 1201
AhlI ACTAGT 1 cut(s) 11
AjiI CACGTC 1 cut(s) 624
AjnI CCWGG 5 cut(s) 496, 746, 753, 984, 1144
AloI GAACNNNNNNTCC 2 cut(s) 1005, 1037
AluBI AGCT 3 cut(s) 603, 660, 790
AluI AGCT 3 cut(s) 603, 660, 790
AlwI GGATC 6 cut(s) 95, 302, 315, 512, 525, 1104
AlwNI CAGNNNCTG 3 cut(s) 353, 461, 1070
Aor13HI TCCGGA 4 cut(s) 211, 382, 418, 490
ApeKI GCWGC 3 cut(s) 603, 627, 981
AsiGI ACCGGT 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 730
AspLEI GCGC 2 cut(s) 716, 1008
AspS9I GGNCC 5 cut(s) 202, 257, 694, 751, 856
AsuHPI GGTGA 4 cut(s) 67, 110, 769, 1134
AvaII GGWCC 5 cut(s) 202, 257, 694, 751, 856
BamHI GGATCC 2 cut(s) 307, 517
BanII GRGCYC 1 cut(s) 170
BbsI GAAGAC 2 cut(s) 200, 554
BbvI GCAGC 3 cut(s) 590, 639, 968
BccI CCATC 5 cut(s) 143, 602, 847, 1115, 1202
BceAI ACGGC 1 cut(s) 1098
BciT130I CCWGG 5 cut(s) 498, 748, 755, 986, 1146
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 735
BisI GCNGC 3 cut(s) 604, 628, 982
BlsI GCNGC 3 cut(s) 605, 629, 983
BmcAI AGTACT 2 cut(s) 238, 819
Bme1390I CCNGG 5 cut(s) 498, 748, 755, 986, 1146
Bme18I GGWCC 5 cut(s) 202, 257, 694, 751, 856
BmgBI CACGTC 1 cut(s) 624
BmgT120I GGNCC 5 cut(s) 202, 257, 694, 751, 856
BmrFI CCNGG 5 cut(s) 498, 748, 755, 986, 1146
BmrI ACTGGG 1 cut(s) 1234
BmsI GCATC 2 cut(s) 60, 1162
BmuI ACTGGG 1 cut(s) 1234
BpiI GAAGAC 2 cut(s) 200, 554
BpmI CTGGAG 5 cut(s) 330, 438, 519, 1032, 1167
Bpu10I CCTNAGC 4 cut(s) 318, 390, 426, 462
BsaBI GATNNNNATC 1 cut(s) 312
BsaHI GRCGYC 3 cut(s) 188, 197, 917
BsaJI CCNNGG 1 cut(s) 747
BsaWI WCCGGW 7 cut(s) 211, 250, 272, 382, 418, 490, 508
BsaXI ACNNNNNCTCC 4 cut(s) 828, 858, 1005, 1035
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 211, 279, 497, 926
Bse118I RCCGGY 2 cut(s) 244, 272
Bse1I ACTGG 3 cut(s) 140, 1015, 1229
Bse3DI GCAATG 1 cut(s) 1046
Bse8I GATNNNNATC 1 cut(s) 312
BseAI TCCGGA 4 cut(s) 211, 382, 418, 490
BseBI CCWGG 5 cut(s) 498, 748, 755, 986, 1146
BseDI CCNNGG 1 cut(s) 747
BseGI GGATG 4 cut(s) 975, 1114, 1126, 1234
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 5 cut(s) 110, 211, 279, 497, 926
BseMI GCAATG 1 cut(s) 1046
BseMII CTCAG 4 cut(s) 309, 381, 417, 453
BseNI ACTGG 3 cut(s) 140, 1015, 1229
BseRI GAGGAG 1 cut(s) 1009
BseXI GCAGC 3 cut(s) 590, 639, 968
BsgI GTGCAG 1 cut(s) 646
Bsh1236I CGCG 1 cut(s) 708
BshTI ACCGGT 1 cut(s) 272
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 5 cut(s) 110, 211, 279, 497, 926
BsmFI GGGAC 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 170
Bsp13I TCCGGA 4 cut(s) 211, 382, 418, 490
Bsp143I GATC 6 cut(s) 93, 100, 307, 517, 783, 1096
BspACI CCGC 3 cut(s) 23, 137, 180
BspCNI CTCAG 4 cut(s) 310, 382, 418, 454
BspEI TCCGGA 4 cut(s) 211, 382, 418, 490
BspFNI CGCG 1 cut(s) 708
BspMAI CTGCAG 1 cut(s) 739
BspPI GGATC 6 cut(s) 95, 302, 315, 512, 525, 1104
BspQI GCTCTTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 1046
BsrFI RCCGGY 2 cut(s) 244, 272
BsrI ACTGG 3 cut(s) 140, 1015, 1229
BssAI RCCGGY 2 cut(s) 244, 272
BssECI CCNNGG 1 cut(s) 747
BssMI GATC 6 cut(s) 93, 100, 307, 517, 783, 1096
BssNI GRCGYC 3 cut(s) 188, 197, 917
Bst2UI CCWGG 5 cut(s) 498, 748, 755, 986, 1146
Bst4CI ACNGT 2 cut(s) 236, 952
Bst6I CTCTTC 2 cut(s) 44, 507
BstACI GRCGYC 3 cut(s) 188, 197, 917
BstC8I GCNNGC 2 cut(s) 649, 845
BstDEI CTNAG 5 cut(s) 318, 390, 426, 462, 552
BstF5I GGATG 4 cut(s) 975, 1114, 1126, 1234
BstFNI CGCG 1 cut(s) 708
BstHHI GCGC 2 cut(s) 716, 1008
BstKTI GATC 6 cut(s) 96, 103, 310, 520, 786, 1099
BstMBI GATC 6 cut(s) 93, 100, 307, 517, 783, 1096
BstMWI GCNNNNNNNGC 4 cut(s) 79, 179, 196, 657
BstNI CCWGG 5 cut(s) 498, 748, 755, 986, 1146
BstSCI CCNGG 5 cut(s) 496, 746, 753, 984, 1144
BstSFI CTRYAG 1 cut(s) 735
BstUI CGCG 1 cut(s) 708
BstV1I GCAGC 3 cut(s) 590, 639, 968
BstV2I GAAGAC 2 cut(s) 200, 554
BstX2I RGATCY 2 cut(s) 307, 517
BstXI CCANNNNNNTGG 1 cut(s) 754
BstYI RGATCY 2 cut(s) 307, 517
BtgZI GCGATG 1 cut(s) 621
BtrI CACGTC 1 cut(s) 624
BtsCI GGATG 4 cut(s) 975, 1114, 1126, 1234
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 3 cut(s) 957, 1008, 1140
Cac8I GCNNGC 2 cut(s) 649, 845
CaiI CAGNNNCTG 3 cut(s) 353, 461, 1070
CfoI GCGC 2 cut(s) 716, 1008
Cfr10I RCCGGY 2 cut(s) 244, 272
Cfr13I GGNCC 5 cut(s) 202, 257, 694, 751, 856
CseI GACGC 3 cut(s) 196, 205, 925
CsiI ACCWGGT 1 cut(s) 753
Csp6I GTAC 3 cut(s) 237, 704, 818
CspAI ACCGGT 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 1056, 1091
CviAII CATG 1 cut(s) 886
CviQI GTAC 3 cut(s) 237, 704, 818
DdeI CTNAG 5 cut(s) 318, 390, 426, 462, 552
DpnI GATC 6 cut(s) 95, 102, 309, 519, 785, 1098
DpnII GATC 6 cut(s) 93, 100, 307, 517, 783, 1096
Eam1104I CTCTTC 2 cut(s) 44, 507
EarI CTCTTC 2 cut(s) 44, 507
Eco24I GRGCYC 1 cut(s) 170
Eco47I GGWCC 5 cut(s) 202, 257, 694, 751, 856
Eco57I CTGAAG 3 cut(s) 833, 891, 1047
EcoO109I RGGNCCY 1 cut(s) 751
EcoRII CCWGG 5 cut(s) 496, 746, 753, 984, 1144
EcoT38I GRGCYC 1 cut(s) 170
FaeI CATG 1 cut(s) 889
FaiI YATR 8 cut(s) 84, 641, 777, 797, 887, 903, 934, 1169
FalI AAGNNNNNCTT 2 cut(s) 864, 896
FaqI GGGAC 1 cut(s) 764
FatI CATG 1 cut(s) 885
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 604, 628, 982
FokI GGATG 3 cut(s) 982, 1121, 1133
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 604, 628, 982
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 715, 1007
GluI GCNGC 3 cut(s) 604, 628, 982
GsuI CTGGAG 5 cut(s) 330, 438, 519, 1032, 1167
HgaI GACGC 3 cut(s) 196, 205, 925
HhaI GCGC 2 cut(s) 716, 1008
Hin1I GRCGYC 3 cut(s) 188, 197, 917
Hin1II CATG 1 cut(s) 889
Hin6I GCGC 2 cut(s) 714, 1006
HinP1I GCGC 2 cut(s) 714, 1006
HinfI GANTC 8 cut(s) 208, 373, 379, 409, 481, 532, 671, 1055
HphI GGTGA 4 cut(s) 67, 110, 769, 1134
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 7 cut(s) 52, 108, 121, 378, 522, 852, 871
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 8 cut(s) 103, 325, 397, 433, 469, 866, 906, 1082
HpyCH4III ACNGT 2 cut(s) 236, 952
HpyCH4IV ACGT 1 cut(s) 623
HpyCH4V TGCA 7 cut(s) 527, 627, 651, 737, 932, 1133, 1190
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 179, 196, 657
HpyF3I CTNAG 5 cut(s) 318, 390, 426, 462, 552
HpySE526I ACGT 1 cut(s) 623
Hsp92I GRCGYC 3 cut(s) 188, 197, 917
Hsp92II CATG 1 cut(s) 889
HspAI GCGC 2 cut(s) 714, 1006
Kpn2I TCCGGA 4 cut(s) 211, 382, 418, 490
Kzo9I GATC 6 cut(s) 93, 100, 307, 517, 783, 1096
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 5 cut(s) 214, 253, 385, 421, 493
Lsp1109I GCAGC 3 cut(s) 590, 639, 968
LweI GCATC 2 cut(s) 60, 1162
MabI ACCWGGT 1 cut(s) 753
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 623
MaeIII GTNAC 6 cut(s) 563, 571, 913, 946, 1078, 1140
MalI GATC 6 cut(s) 95, 102, 309, 519, 785, 1098
MboI GATC 6 cut(s) 93, 100, 307, 517, 783, 1096
MboII GAAGA 7 cut(s) 31, 166, 205, 295, 524, 559, 752
MflI RGATCY 2 cut(s) 307, 517
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 2 cut(s) 115, 957
MlyI GAGTC 2 cut(s) 373, 526
MmeI TCCRAC 4 cut(s) 401, 437, 473, 509
MnlI CCTC 7 cut(s) 114, 508, 959, 987, 990, 1007, 1142
MroI TCCGGA 4 cut(s) 211, 382, 418, 490
MroXI GAANNNNTTC 1 cut(s) 730
MseI TTAA 1 cut(s) 654
MspR9I CCNGG 5 cut(s) 498, 748, 755, 986, 1146
MvaI CCWGG 5 cut(s) 498, 748, 755, 986, 1146
MvnI CGCG 1 cut(s) 708
MwoI GCNNNNNNNGC 4 cut(s) 79, 179, 196, 657
NdeII GATC 6 cut(s) 93, 100, 307, 517, 783, 1096
NlaIII CATG 1 cut(s) 889
NmuCI GTSAC 4 cut(s) 563, 571, 913, 1140
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 730
PfeI GAWTC 6 cut(s) 208, 373, 409, 481, 671, 1055
PflMI CCANNNNNTGG 1 cut(s) 926
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 3 cut(s) 605, 629, 983
PleI GAGTC 2 cut(s) 373, 526
PpsI GAGTC 2 cut(s) 373, 526
PpuMI RGGWCCY 1 cut(s) 751
Psp5II RGGWCCY 1 cut(s) 751
Psp6I CCWGG 5 cut(s) 496, 746, 753, 984, 1144
PspGI CCWGG 5 cut(s) 496, 746, 753, 984, 1144
PspPI GGNCC 5 cut(s) 202, 257, 694, 751, 856
PspPPI RGGWCCY 1 cut(s) 751
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 3 cut(s) 353, 461, 1070
PsuI RGATCY 2 cut(s) 307, 517
RsaI GTAC 3 cut(s) 238, 705, 819
RsaNI GTAC 3 cut(s) 237, 704, 818
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 3 cut(s) 604, 628, 982
Sau3AI GATC 6 cut(s) 93, 100, 307, 517, 783, 1096
Sau96I GGNCC 5 cut(s) 202, 257, 694, 751, 856
ScaI AGTACT 2 cut(s) 238, 819
SchI GAGTC 2 cut(s) 373, 526
ScrFI CCNGG 5 cut(s) 498, 748, 755, 986, 1146
SduI GDGCHC 1 cut(s) 170
SexAI ACCWGGT 1 cut(s) 753
SfaNI GCATC 2 cut(s) 60, 1162
SfcI CTRYAG 1 cut(s) 735
SinI GGWCC 5 cut(s) 202, 257, 694, 751, 856
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 115, 957
SsiI CCGC 3 cut(s) 23, 137, 180
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 5 cut(s) 496, 746, 753, 984, 1144
TaaI ACNGT 2 cut(s) 236, 952
TaiI ACGT 1 cut(s) 626
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 115, 957
TatI WGTACW 2 cut(s) 236, 817
TfiI GAWTC 6 cut(s) 208, 373, 409, 481, 671, 1055
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 3 cut(s) 957, 1015, 1140
TseFI GTSAC 4 cut(s) 563, 571, 913, 1140
TseI GCWGC 3 cut(s) 603, 627, 981
Tsp45I GTSAC 4 cut(s) 563, 571, 913, 1140
TspDTI ATGAA 2 cut(s) 31, 874
TspGWI ACGGA 2 cut(s) 650, 738
TspRI CASTG 3 cut(s) 957, 1015, 1140
Van91I CCANNNNNTGG 1 cut(s) 926
VpaK11BI GGWCC 5 cut(s) 202, 257, 694, 751, 856
XmnI GAANNNNTTC 1 cut(s) 730
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 2 cut(s) 238, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.