Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

30319396 .. 30320268

Gene Structure 873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0268600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCAGTCAAGGATCCTAATACTTTTGATCCAGATTCCGAACCATTTGTGGAGGTTGATCCAACCGGGCGTTTTGGAAGGTATGATGTTCTCCTTGGTAAGGGTGCTGTGAAGAAGGTGTATAGGGCATTTGATCAGCAGCAAGGTAACGAGGTGGCATGGAATAAGGTGTGGTTAAAGAAATTGAGCGACGATCCAGTGCTATCGAATCATCTGGACGCAGAGGTTAAGCTATTGAGAGAGTTGGAGAACAAGTATATCATTGAATGTTACAGTGTTTGGAAGGATGTCAAGCGTAATGCTTTGAATTTCATTACTGAGGTGTGCAATTCTGGGAACCTGAGGGATTATAGGAAGAAGCATCACCGTGTGAATACTAAGGCTTTGAAGAAGTGGTCAAAGCAGGTGCTTGAGGGATTGGAGTACCTCCATACACATGAGCCATGCATCATTCACAGAGATCTCAATTGCAGTAACATCTTCGTCAATGGGAATAATGGCCAGGTGAAGATCGGTGATCTGGGAGTTGCAGCAATAGTGGGTAGCAGCCACAAAGCTCAGACAGTTCTAGGGACACCTGAGTTTATGGCACCTGAGCTATACGAGGAGGATTACAATGAGACAGTGGACATATATTCGTTTGGGATGTGCTTGCTGGAGATGGCAACAAGGGAGATACCATACAGTGAATGTGAAACTGTTGTTAAGATTTACAGGAAGGTCTCAACTGGTATAAGGCCTGAATCCTTGTCCAAGGTGACCGATCCAGAGGTGAAGGCATTTATTGAGAAATCCCTAGGCCAGCCGAGGGAAAGACCTTCAGCCTCTGAGCTACTCAGAGACCCCTTCTTTTCTCAAGTCATTGCCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

290

Amino Acids

33.07

Weight (kDa)

6.04

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 284	1.7e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 280	1.6e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	589
AclWI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 758
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	804
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	100, 808
AgsI	TTSAA	3 cut(s)	266, 307, 388
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	4 cut(s)	232, 557, 598, 832
AluI	AGCT	4 cut(s)	232, 557, 598, 832
Alw26I	GTCTC	3 cut(s)	614, 727, 834
AlwI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 758
AlwNI	CAGNNNCTG	1 cut(s)	827
AoxI	GGCC	3 cut(s)	499, 737, 799
ApeKI	GCWGC	3 cut(s)	139, 530, 546
ApoI	RAATTY	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	796
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	5 cut(s)	356, 517, 527, 769, 784
AvrII	CCTAGG	1 cut(s)	796
AxyI	CCTNAGG	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	589
BbvI	GCAGC	3 cut(s)	151, 542, 558
BccI	CCATC	1 cut(s)	655
BciT130I	CCWGG	1 cut(s)	503
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	614, 727, 834
BfaI	CTAG	2 cut(s)	569, 797
BfuAI	ACCTGC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	3 cut(s)	140, 531, 547
BlnI	CCTAGG	1 cut(s)	796
BlsI	GCNGC	3 cut(s)	141, 532, 548
Bme1390I	CCNGG	2 cut(s)	67, 503
BmiI	GGNNCC	3 cut(s)	15, 338, 591
BmrFI	CCNGG	2 cut(s)	67, 503
BmsI	GCATC	2 cut(s)	370, 456
BpmI	CTGGAG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	431, 840
BpuMI	CCSGG	1 cut(s)	67
BsaI	GGTCTC	2 cut(s)	727, 834
BsaJI	CCNNGG	4 cut(s)	94, 753, 796, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 808
Bse1I	ACTGG	2 cut(s)	197, 733
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	4 cut(s)	94, 753, 796, 806
BseGI	GGATG	2 cut(s)	292, 651
BseLI	CCNNNNNNNGG	2 cut(s)	100, 808
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	7 cut(s)	309, 332, 570, 572, 585, 819, 850
BseNI	ACTGG	2 cut(s)	197, 733
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	151, 542, 558
BshFI	GGCC	3 cut(s)	501, 739, 801
BshNI	GGYRCC	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	2 cut(s)	100, 808
BsmAI	GTCTC	3 cut(s)	614, 727, 834
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	501, 739, 801
Bso31I	GGTCTC	2 cut(s)	727, 834
Bsp143I	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
BspANI	GGCC	3 cut(s)	501, 739, 801
BspCNI	CTCAG	7 cut(s)	310, 333, 571, 571, 586, 820, 849
BspLI	GGNNCC	3 cut(s)	15, 338, 591
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 758
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	2 cut(s)	727, 834
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	197, 733
BssECI	CCNNGG	4 cut(s)	94, 753, 796, 806
BssMI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
BssT1I	CCWWGG	3 cut(s)	94, 753, 796
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	6 cut(s)	275, 368, 565, 625, 686, 700
BstC8I	GCNNGC	2 cut(s)	653, 803
BstDEI	CTNAG	8 cut(s)	318, 341, 378, 558, 579, 594, 828, 836
BstEII	GGTNACC	1 cut(s)	757
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	292, 651
BstKTI	GATC	9 cut(s)	16, 31, 61, 136, 196, 463, 513, 520, 766
BstMAI	GTCTC	3 cut(s)	614, 727, 834
BstMBI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
BstNI	CCWGG	1 cut(s)	503
BstPI	GGTNACC	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	65, 501
BstV1I	GCAGC	3 cut(s)	151, 542, 558
BstX2I	RGATCY	2 cut(s)	13, 460
BstYI	RGATCY	2 cut(s)	13, 460
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	3 cut(s)	501, 739, 801
BtsCI	GGATG	2 cut(s)	292, 651
BtsIMutI	CAGTG	4 cut(s)	204, 280, 630, 691
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	653, 803
CaiI	CAGNNNCTG	1 cut(s)	827
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	3 cut(s)	159, 437, 444
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	8 cut(s)	318, 341, 378, 558, 579, 594, 828, 836
DpnI	GATC	9 cut(s)	15, 30, 60, 135, 195, 462, 512, 519, 765
DpnII	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
DraIII	CACNNNGTG	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	499
Eco130I	CCWWGG	3 cut(s)	94, 753, 796
Eco147I	AGGCCT	1 cut(s)	739
Eco31I	GGTCTC	2 cut(s)	727, 834
Eco57I	CTGAAG	1 cut(s)	804
Eco81I	CCTNAGG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	757
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	3 cut(s)	94, 753, 796
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	3 cut(s)	94, 753, 796
FaeI	CATG	3 cut(s)	162, 440, 447
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	3 cut(s)	158, 436, 443
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	140, 531, 547
FokI	GGATG	2 cut(s)	299, 658
Fsp4HI	GCNGC	3 cut(s)	140, 531, 547
FspBI	CTAG	2 cut(s)	569, 797
GluI	GCNGC	3 cut(s)	140, 531, 547
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	501, 739, 801
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	162, 440, 447
HinfI	GANTC	3 cut(s)	35, 208, 743
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	5 cut(s)	356, 517, 527, 769, 784
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	4 cut(s)	40, 561, 829, 839
Hpy188III	TCNNGA	3 cut(s)	32, 215, 767
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	7 cut(s)	72, 109, 277, 712, 769, 828, 856
HpyCH4III	ACNGT	6 cut(s)	275, 368, 565, 625, 686, 700
HpyCH4V	TGCA	4 cut(s)	327, 447, 471, 530
HpyF3I	CTNAG	8 cut(s)	318, 341, 378, 558, 579, 594, 828, 836
Hsp92II	CATG	3 cut(s)	162, 440, 447
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
Lsp1109I	GCAGC	3 cut(s)	151, 542, 558
LweI	GCATC	2 cut(s)	370, 456
MaeI	CTAG	2 cut(s)	569, 797
MaeIII	GTNAC	4 cut(s)	146, 269, 473, 757
MalI	GATC	9 cut(s)	15, 30, 60, 135, 195, 462, 512, 519, 765
MboI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
MboII	GAAGA	5 cut(s)	124, 367, 400, 472, 520
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	2 cut(s)	13, 460
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	4 cut(s)	182, 307, 328, 466
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	2 cut(s)	86, 225
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	3 cut(s)	176, 228, 705
MslI	CAYNNNNRTG	2 cut(s)	366, 435
Msp20I	TGGCCA	1 cut(s)	501
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	67, 503
MunI	CAATTG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	503
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
NlaIII	CATG	3 cut(s)	162, 440, 447
NlaIV	GGNNCC	3 cut(s)	15, 338, 591
NmeAIII	GCCGAG	1 cut(s)	831
NmuCI	GTSAC	1 cut(s)	757
NsiI	ATGCAT	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	739
PfeI	GAWTC	3 cut(s)	35, 208, 743
PkrI	GCNGC	3 cut(s)	141, 532, 548
Psp6I	CCWGG	1 cut(s)	501
PspEI	GGTNACC	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	15, 338, 591
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	2 cut(s)	13, 460
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	366, 435
SaqAI	TTAA	3 cut(s)	176, 228, 705
SatI	GCNGC	3 cut(s)	140, 531, 547
Sau3AI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
ScrFI	CCNGG	2 cut(s)	67, 503
SfaNI	GCATC	2 cut(s)	370, 456
SmiMI	CAYNNNNRTG	2 cut(s)	366, 435
SmlI	CTYRAG	2 cut(s)	410, 855
SmoI	CTYRAG	2 cut(s)	410, 855
Sse9I	AATT	4 cut(s)	182, 307, 328, 466
SseBI	AGGCCT	1 cut(s)	739
SspMI	CTAG	2 cut(s)	569, 797
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	2 cut(s)	65, 501
StyI	CCWWGG	3 cut(s)	94, 753, 796
TaaI	ACNGT	6 cut(s)	275, 368, 565, 625, 686, 700
TaqI	TCGA	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	776
TasI	AATT	4 cut(s)	182, 307, 328, 466
TfiI	GAWTC	3 cut(s)	35, 208, 743
Tru1I	TTAA	3 cut(s)	176, 228, 705
Tru9I	TTAA	3 cut(s)	176, 228, 705
TscAI	CASTG	4 cut(s)	204, 280, 630, 691
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	3 cut(s)	139, 530, 546
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	1 cut(s)	301
TspRI	CASTG	4 cut(s)	204, 280, 630, 691
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	307
XmaJI	CCTAGG	1 cut(s)	796
XspI	CTAG	2 cut(s)	569, 797
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.