Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

42040763 .. 42049499

Gene Structure 8737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAAGAGAAGGAGAAGACGACGACATAGTTTGCTTAGACGAATCGTTTTTCATCGATGACAATTACCAGCTGACCACTTTCACATTTGGGTCTCAAGTTCTTCAACTCCTTTGCCTCCAATCTGCTTCCACTGATTTTGATCTTACAGGACAATTGGTGTGGCCAGGGGCAATGCTGTTGAATGATTACCTTTCTAAGAATGCAGAGATCCTGCAAGGATGCACTGTTATTGAGTTAGGGTCTGGGGTTGGTATTACTGGAATACTATGCAGCAGATTTTGCAGTCAAGTTGTTTTAACAGACCACAATGAAGAAGTGCTCAAGATCTTGAATAAAAATATAGAGCTTCACGCATCTTCTGATAATCCTGAATACTGTGCTGGATTAGCAGCGGAGAAACTAGAATGGGGAAATTCTGAGCAGATCTCCCAGATTTTACAAAAGTATTCAAGAGGGTTCGATTTGATTCTTGGAGCTGATATATGCTTTCAGCAGTCAAGCATTACTTCGCTTTTTGACACGGTGGAAGAACTTCTTCGAGTTAGAAAAGAAGGAAAGTGCAAATTCATACTAGCCTATGTGTCCCGTGCTAAGACCATGGATTCATTGGTCATTAGTGAAGCGGCCCGACGTAAGATGCAGATAAATGAATTAGTTGGGACTCGATCTTTCGTTGGCAATCTAGAAGGACTTTTCTATGAGGTGAACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

238

Amino Acids

26.57

Weight (kDa)

4.47

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	50 - 199	6.8e-22	Lysine methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	395, 626
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	415, 566
AgsI	TTSAA	4 cut(s)	107, 184, 334, 453
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	3 cut(s)	73, 349, 479
AluI	AGCT	3 cut(s)	73, 349, 479
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	2 cut(s)	164, 627
ApeKI	GCWGC	2 cut(s)	273, 392
ApoI	RAATTY	2 cut(s)	415, 566
Asp700I	GAANNNNTTC	2 cut(s)	534, 537
AspS9I	GGNCC	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	285, 404
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	3 cut(s)	404, 575, 686
BfmI	CTRYAG	1 cut(s)	713
BglII	AGATCT	2 cut(s)	327, 426
BisI	GCNGC	3 cut(s)	274, 393, 627
BlsI	GCNGC	3 cut(s)	275, 394, 628
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	212, 365, 630
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpuEI	CTTGAG	2 cut(s)	81, 308
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	167, 600
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	167, 600
BseGI	GGATG	1 cut(s)	227
BseJI	GATNNNNATC	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	285, 404
BshFI	GGCC	2 cut(s)	166, 629
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	571, 676
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	571, 676
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	166, 629
Bso31I	GGTCTC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	5 cut(s)	142, 210, 327, 426, 668
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	2 cut(s)	395, 626
BspANI	GGCC	2 cut(s)	166, 629
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	57
BspPI	GGATC	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	167, 600
BssMI	GATC	5 cut(s)	142, 210, 327, 426, 668
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	229, 380, 526
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstDEI	CTNAG	4 cut(s)	37, 198, 420, 594
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	5 cut(s)	145, 213, 330, 429, 671
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	5 cut(s)	142, 210, 327, 426, 668
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 389
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	713
BstV1I	GCAGC	2 cut(s)	285, 404
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	3 cut(s)	210, 327, 426
BstYI	RGATCY	3 cut(s)	210, 327, 426
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	166, 629
BsuTUI	ATCGAT	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	132, 225
Cfr13I	GGNCC	1 cut(s)	628
ClaI	ATCGAT	1 cut(s)	57
CspCI	CAANNNNNGTGG	4 cut(s)	121, 143, 156, 178
CviAII	CATG	1 cut(s)	601
CviJI	RGCY	6 cut(s)	73, 166, 349, 479, 578, 629
CviKI_1	RGCY	6 cut(s)	73, 166, 349, 479, 578, 629
DdeI	CTNAG	4 cut(s)	37, 198, 420, 594
DpnI	GATC	5 cut(s)	144, 212, 329, 428, 670
DpnII	GATC	5 cut(s)	142, 210, 327, 426, 668
EaeI	YGGCCR	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	1 cut(s)	604
FalI	AAGNNNNNCTT	4 cut(s)	493, 525, 522, 554
FaqI	GGGAC	2 cut(s)	571, 676
FatI	CATG	1 cut(s)	600
Fnu4HI	GCNGC	3 cut(s)	274, 393, 627
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	274, 393, 627
FspBI	CTAG	3 cut(s)	404, 575, 686
GluI	GCNGC	3 cut(s)	274, 393, 627
HaeIII	GGCC	2 cut(s)	166, 629
Hin1II	CATG	1 cut(s)	604
HinfI	GANTC	4 cut(s)	44, 469, 605, 664
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	2 cut(s)	364, 421
Hpy188III	TCNNGA	5 cut(s)	325, 331, 371, 453, 686
Hpy8I	GTNNAC	1 cut(s)	709
Hpy99I	CGWCG	2 cut(s)	26, 636
HpyAV	CCTTC	3 cut(s)	5, 548, 683
HpyCH4III	ACNGT	3 cut(s)	229, 380, 526
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	7 cut(s)	206, 217, 225, 273, 285, 564, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 389
HpyF3I	CTNAG	4 cut(s)	37, 198, 420, 594
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	142, 210, 327, 426, 668
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	2 cut(s)	285, 404
LweI	GCATC	3 cut(s)	212, 365, 630
MaeI	CTAG	3 cut(s)	404, 575, 686
MaeII	ACGT	1 cut(s)	634
MalI	GATC	5 cut(s)	144, 212, 329, 428, 670
MboI	GATC	5 cut(s)	142, 210, 327, 426, 668
MboII	GAAGA	6 cut(s)	29, 95, 326, 351, 530, 542
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	3 cut(s)	210, 327, 426
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	5 cut(s)	64, 155, 415, 566, 653
MluNI	TGGCCA	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	658
MnlI	CCTC	3 cut(s)	128, 449, 697
Mox20I	TGGCCA	1 cut(s)	166
MroXI	GAANNNNTTC	2 cut(s)	534, 537
MscI	TGGCCA	1 cut(s)	166
MseI	TTAA	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	166
MspA1I	CMGCKG	2 cut(s)	73, 395
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	282, 389
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	5 cut(s)	142, 210, 327, 426, 668
NlaIII	CATG	1 cut(s)	604
PctI	GAATGC	1 cut(s)	208
PdmI	GAANNNNTTC	2 cut(s)	534, 537
PfeI	GAWTC	3 cut(s)	44, 469, 605
PkrI	GCNGC	3 cut(s)	275, 394, 628
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	628
PsuI	RGATCY	3 cut(s)	210, 327, 426
PvuII	CAGCTG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	3 cut(s)	274, 393, 627
Sau3AI	GATC	5 cut(s)	142, 210, 327, 426, 668
Sau96I	GGNCC	1 cut(s)	628
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	75, 195, 351, 481, 637, 708, 714
SfaNI	GCATC	3 cut(s)	212, 365, 630
SfcI	CTRYAG	1 cut(s)	713
SmlI	CTYRAG	2 cut(s)	96, 323
SmoI	CTYRAG	2 cut(s)	96, 323
Sse9I	AATT	5 cut(s)	64, 155, 415, 566, 653
SsiI	CCGC	2 cut(s)	395, 626
SspMI	CTAG	3 cut(s)	404, 575, 686
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	3 cut(s)	229, 380, 526
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	4 cut(s)	57, 462, 541, 667
TasI	AATT	5 cut(s)	64, 155, 415, 566, 653
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	3 cut(s)	44, 469, 605
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	139, 232
TseI	GCWGC	2 cut(s)	273, 392
TspDTI	ATGAA	5 cut(s)	43, 327, 559, 597, 666
TspRI	CASTG	2 cut(s)	139, 232
XapI	RAATTY	2 cut(s)	415, 566
XbaI	TCTAGA	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmnI	GAANNNNTTC	2 cut(s)	534, 537
XspI	CTAG	3 cut(s)	404, 575, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.