Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

12700777 .. 12701200

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0094800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCAGGACATGATTGAAGAAATGGGTAAAGAGCCTCACAACTATAGAATGGCCACTTCAACCGCGTGGTTCTTTGTACTCACCAATCTTGGTCTAGTGATTTCTTCAGCTAAGTTTGATCAATTTTCCTCCGAAAGTAATAAGCACCATACTGCACTAATTAGCATGGTGCTGGCTATTTTGGCTGTGATCATTTCCATCTGGGAGCTCATTCACATGGGTATAAAGGAGGGAGTGAAATATAGGAGTCAACTGGGAATGTTTGGGTGGTTTTATTCACGTTCCGGTAACAAGATCTTTGGTAGTGTTCCTGACATGTGTGGTTTACTTGGTGGCATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

6.9

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	2 cut(s)	17, 60
AluBI	AGCT	2 cut(s)	110, 208
AluI	AGCT	2 cut(s)	110, 208
Alw21I	GWGCWC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	206
BclI	TGATCA	2 cut(s)	118, 189
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	43
BglII	AGATCT	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	285
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	118, 189, 294
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	118, 189, 294
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	3 cut(s)	121, 192, 297
BstMBI	GATC	3 cut(s)	118, 189, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	4 cut(s)	10, 166, 217, 316
CviJI	RGCY	6 cut(s)	34, 53, 110, 176, 185, 208
CviKI_1	RGCY	6 cut(s)	34, 53, 110, 176, 185, 208
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	3 cut(s)	120, 191, 296
DpnII	GATC	3 cut(s)	118, 189, 294
EaeI	YGGCCR	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	4 cut(s)	13, 169, 220, 319
FaiI	YATR	8 cut(s)	11, 45, 150, 167, 218, 224, 243, 317
FatI	CATG	4 cut(s)	9, 165, 216, 315
FbaI	TGATCA	2 cut(s)	118, 189
FriOI	GRGCYC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	4 cut(s)	13, 169, 220, 319
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	251, 326
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	2 cut(s)	251, 326
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	4, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	4 cut(s)	13, 169, 220, 319
Ksp22I	TGATCA	2 cut(s)	118, 189
Kzo9I	GATC	3 cut(s)	118, 189, 294
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	158, 187, 239, 298, 324
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	120, 191, 296
MboI	GATC	3 cut(s)	118, 189, 294
MboII	GAAGA	2 cut(s)	29, 96
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	122, 159
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	45, 139, 223
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	343
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	3 cut(s)	118, 189, 294
NlaIII	CATG	4 cut(s)	13, 169, 220, 319
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PscI	ACATGT	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	343
Sau3AI	GATC	3 cut(s)	118, 189, 294
SchI	GAGTC	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	3 cut(s)	112, 210, 283
SfcI	CTRYAG	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	122, 159
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	210
TaiI	ACGT	1 cut(s)	283
TasI	AATT	2 cut(s)	122, 159
TatI	WGTACW	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.