Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

27036531 .. 27041941

Gene Structure 5411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0273700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGTTTACTCAACTCTCCTCCACTCGTCGCACACCGTCTTGCTCTGGCGGCGTTCACCCAATCTCCTCCTCGCCTCTCTTCTCTACTCTCCTCTTTTGTTTCTCCACACACAGGAGGAAGAAGACACACGACGGCGGCGACTTGTAGCGGTGAATGTGCTACGCTGGATTATGATGATAATGACGACGATGGTAGAGCAAGAGAGAAAGATGCTGCACTGCATTTGGCTCTCTCACGGCTTTCTGGCGATTTCGGGCACGAATCCATGTTGTCCCTGCCGCGGTTTTTTCGCTCGAGGCGCGCACCTGTTATCTCCACTGGCTCCTTGAAGCTTGATATAGCTCTGGGGACTGGAGGATTGCCAAAGGGAAGAATTGTTGAGATTTATGGGCAGGAAGCATCTGGCAAGACTACGCTCGCACTTCACATCGTCAAGGAAGCCCAAAAGCTTGGAGGGTATTGTGCATATCTGGATGTAGAGAATGCGTTGGACCCTTCACTTGCAGAATCGATGGGTGTAAACACAGAAAACCTTCTCATTTCGCATCCCAATTCTGCTGAAAATGTGCTGAATGTGGTCGACACTCTGACTAAAAGTGGTTCCTTGGATGTAATTGTTGTGGATAGTGTAGCTGCTCTGGTCCCCCAGTGTGAACTTGATGTTGCAATTGGTAGTGCATACCCAGATGCTCAGTCAAGAATAATGACCCAAGCACTACGAAAAATTCATTCTTCATTAAGCCATTCTCAAGCACTTGTTGTTTTTATAAATCAGGTTAGATCAAGTCCAAACTCAGGGCAAGGTTTTGGACCTGTGGATGAGGTCACCTGTGGTGGAAATGCCTTGAGATTCTATGCAGCAGTTCGATTGAGAATAAAAAGAACCCAGTTGCTTAAGACTGAGGATCAGATTACAGGTCTTGGGATTTCCGTGCAAGTGGTGAAAAATAAATTGGCACTTGCAATGAAGAAGGCTGATCTGGGGATACAGTTTGGTAGAGGGTTATGCTGTGAATCTGAGGTCTTGCAATTGGCTTGCGAACATGGGGTCATTGCGAAAGATGGAAGCAACTACCACATAGGAAGAAAGGTTTTTAGTAATGTACATTCAGCAGAACAGTATTTGGCTAAAAATGATGATATTTTGAATAAGATAGTTAGGATCTTGAGGCAAACTTTATTTGAAAAAGATAGTCAATTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

402

Amino Acids

43.31

Weight (kDa)

8.08

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	73 - 336	1.8e-87	RecA N-terminal domain
Rad51	PF08423	104 - 296	2.6e-10	Rad51
ATPase	PF06745	106 - 178	3.5e-06	KaiC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	2 cut(s)	283, 303
AciI	CCGC	5 cut(s)	50, 137, 150, 281, 283
AclWI	GGATC	2 cut(s)	915, 1172
AcsI	RAATTY	1 cut(s)	726
AfaI	GTAC	1 cut(s)	1107
AfiI	CCNNNNNNNGG	3 cut(s)	113, 282, 797
AflII	CTTAAG	1 cut(s)	896
AgsI	TTSAA	3 cut(s)	331, 1150, 1187
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
AluBI	AGCT	4 cut(s)	334, 344, 451, 635
AluI	AGCT	4 cut(s)	334, 344, 451, 635
AlwI	GGATC	2 cut(s)	915, 1172
Ama87I	CYCGRG	1 cut(s)	295
ApeKI	GCWGC	3 cut(s)	215, 635, 860
ApoI	RAATTY	1 cut(s)	726
ArsI	GACNNNNNNTTYG	2 cut(s)	1035, 1067
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	303, 305
AspS9I	GGNCC	3 cut(s)	493, 643, 812
AsuHPI	GGTGA	4 cut(s)	49, 164, 820, 955
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	3 cut(s)	493, 643, 812
BaeGI	GKGCMC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	202, 622, 872
BccI	CCATC	3 cut(s)	185, 508, 1058
BceAI	ACGGC	2 cut(s)	150, 254
BciVI	GTATCC	1 cut(s)	981
BfrI	CTTAAG	1 cut(s)	896
BfuI	GTATCC	1 cut(s)	981
BisI	GCNGC	6 cut(s)	51, 138, 216, 281, 636, 861
BlsI	GCNGC	6 cut(s)	52, 139, 217, 282, 637, 862
Bme18I	GGWCC	3 cut(s)	493, 643, 812
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	493, 643, 812
BmiI	GGNNCC	4 cut(s)	325, 495, 604, 645
BmrI	ACTGGG	2 cut(s)	643, 883
BmsI	GCATC	4 cut(s)	202, 410, 556, 679
BmuI	ACTGGG	2 cut(s)	643, 883
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	375
BpuEI	CTTGAG	3 cut(s)	735, 868, 1189
Bsa29I	ATCGAT	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	281, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 282, 797
Bse1I	ACTGG	4 cut(s)	325, 358, 649, 889
Bse3DI	GCAATG	2 cut(s)	972, 1053
BseCI	ATCGAT	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	281, 606
BseGI	GGATG	4 cut(s)	481, 547, 616, 826
BseLI	CCNNNNNNNGG	3 cut(s)	113, 282, 797
BseMI	GCAATG	2 cut(s)	972, 1053
BseMII	CTCAG	4 cut(s)	707, 810, 894, 1011
BseNI	ACTGG	4 cut(s)	325, 358, 649, 889
BsePI	GCGCGC	1 cut(s)	301
BseRI	GAGGAG	4 cut(s)	9, 57, 60, 82
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	202, 622, 872
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	2 cut(s)	283, 303
BshVI	ATCGAT	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	295
BslFI	GGGAC	3 cut(s)	259, 364, 629
BslI	CCNNNNNNNGG	3 cut(s)	113, 282, 797
BsmFI	GGGAC	3 cut(s)	259, 364, 629
BsmI	GAATGC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	1105
Bsp143I	GATC	4 cut(s)	782, 907, 979, 1164
BspACI	CCGC	5 cut(s)	50, 137, 150, 281, 283
BspCNI	CTCAG	4 cut(s)	706, 809, 895, 1012
BspDI	ATCGAT	1 cut(s)	512
BspFNI	CGCG	2 cut(s)	283, 303
BspLI	GGNNCC	4 cut(s)	325, 495, 604, 645
BspPI	GGATC	2 cut(s)	915, 1172
BspTI	CTTAAG	1 cut(s)	896
BsrDI	GCAATG	2 cut(s)	972, 1053
BsrGI	TGTACA	1 cut(s)	1105
BsrI	ACTGG	4 cut(s)	325, 358, 649, 889
BssECI	CCNNGG	2 cut(s)	281, 606
BssHII	GCGCGC	1 cut(s)	301
BssMI	GATC	4 cut(s)	782, 907, 979, 1164
BssT1I	CCWWGG	1 cut(s)	606
Bst4CI	ACNGT	3 cut(s)	38, 993, 1122
Bst6I	CTCTTC	1 cut(s)	85
BstAFI	CTTAAG	1 cut(s)	896
BstAUI	TGTACA	1 cut(s)	1105
BstC8I	GCNNGC	3 cut(s)	303, 420, 1039
BstDEI	CTNAG	4 cut(s)	693, 796, 903, 1020
BstDSI	CCRYGG	1 cut(s)	281
BstEII	GGTNACC	1 cut(s)	826
BstF5I	GGATG	4 cut(s)	481, 547, 616, 826
BstFNI	CGCG	2 cut(s)	283, 303
BstHHI	GCGC	2 cut(s)	303, 305
BstKTI	GATC	4 cut(s)	785, 910, 982, 1167
BstMBI	GATC	4 cut(s)	782, 907, 979, 1164
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 300
BstPI	GGTNACC	1 cut(s)	826
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	2 cut(s)	283, 303
BstV1I	GCAGC	3 cut(s)	202, 622, 872
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	1164
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	1164
Bsu15I	ATCGAT	1 cut(s)	512
BsuI	GTATCC	1 cut(s)	981
BsuTUI	ATCGAT	1 cut(s)	512
BtgI	CCRYGG	1 cut(s)	281
BtsCI	GGATG	4 cut(s)	481, 547, 616, 826
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	218, 318, 656
Cac8I	GCNNGC	3 cut(s)	303, 420, 1039
CfoI	GCGC	2 cut(s)	303, 305
Cfr13I	GGNCC	3 cut(s)	493, 643, 812
Cfr42I	CCGCGG	1 cut(s)	284
ClaI	ATCGAT	1 cut(s)	512
Csp6I	GTAC	1 cut(s)	1106
CviAII	CATG	2 cut(s)	268, 1046
CviQI	GTAC	1 cut(s)	1106
DdeI	CTNAG	4 cut(s)	693, 796, 903, 1020
DpnI	GATC	4 cut(s)	784, 909, 981, 1166
DpnII	GATC	4 cut(s)	782, 907, 979, 1164
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	606
Eco47I	GGWCC	3 cut(s)	493, 643, 812
Eco88I	CYCGRG	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	826
EcoO65I	GGTNACC	1 cut(s)	826
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	2 cut(s)	271, 1049
FaqI	GGGAC	3 cut(s)	259, 364, 629
FatI	CATG	2 cut(s)	267, 1045
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	6 cut(s)	51, 138, 216, 281, 636, 861
FokI	GGATG	4 cut(s)	488, 534, 623, 833
Fsp4HI	GCNGC	6 cut(s)	51, 138, 216, 281, 636, 861
GlaI	GCGC	2 cut(s)	302, 304
GluI	GCNGC	6 cut(s)	51, 138, 216, 281, 636, 861
GsuI	CTGGAG	1 cut(s)	375
HhaI	GCGC	2 cut(s)	303, 305
Hin1II	CATG	2 cut(s)	271, 1049
Hin6I	GCGC	2 cut(s)	301, 303
HinP1I	GCGC	2 cut(s)	301, 303
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	2 cut(s)	332, 449
HinfI	GANTC	4 cut(s)	263, 509, 852, 1016
HphI	GGTGA	4 cut(s)	49, 164, 820, 955
Hpy166II	GTNNAC	5 cut(s)	8, 57, 523, 583, 656
Hpy188I	TCNGA	3 cut(s)	591, 912, 1021
Hpy188III	TCNNGA	3 cut(s)	473, 699, 1168
Hpy8I	GTNNAC	5 cut(s)	8, 57, 523, 583, 656
Hpy99I	CGWCG	3 cut(s)	32, 136, 191
HpyAV	CCTTC	3 cut(s)	507, 545, 967
HpyCH4III	ACNGT	3 cut(s)	38, 993, 1122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 300
HpyF3I	CTNAG	4 cut(s)	693, 796, 903, 1020
Hsp92II	CATG	2 cut(s)	271, 1049
HspAI	GCGC	2 cut(s)	301, 303
KspI	CCGCGG	1 cut(s)	284
Kzo9I	GATC	4 cut(s)	782, 907, 979, 1164
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	3 cut(s)	202, 622, 872
LweI	GCATC	4 cut(s)	202, 410, 556, 679
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	4 cut(s)	784, 909, 981, 1166
MboI	GATC	4 cut(s)	782, 907, 979, 1164
MboII	GAAGA	7 cut(s)	72, 132, 135, 384, 726, 982, 1098
MfeI	CAATTG	2 cut(s)	669, 1031
MflI	RGATCY	1 cut(s)	1164
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	8 cut(s)	375, 553, 615, 669, 726, 953, 1031, 1199
MmeI	TCCRAC	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	2 cut(s)	740, 897
MspA1I	CMGCKG	1 cut(s)	283
MspCI	CTTAAG	1 cut(s)	896
MunI	CAATTG	2 cut(s)	669, 1031
Mva1269I	GAATGC	1 cut(s)	490
MvnI	CGCG	2 cut(s)	283, 303
MwoI	GCNNNNNNNGC	2 cut(s)	50, 300
NdeII	GATC	4 cut(s)	782, 907, 979, 1164
NlaIII	CATG	2 cut(s)	271, 1049
NlaIV	GGNNCC	4 cut(s)	325, 495, 604, 645
NmuCI	GTSAC	1 cut(s)	826
PaeR7I	CTCGAG	1 cut(s)	295
PauI	GCGCGC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PctI	GAATGC	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	263, 509, 852, 1016
PkrI	GCNGC	6 cut(s)	52, 139, 217, 282, 637, 862
PsiI	TTATAA	1 cut(s)	770
PspEI	GGTNACC	1 cut(s)	826
PspN4I	GGNNCC	4 cut(s)	325, 495, 604, 645
PspPI	GGNCC	3 cut(s)	493, 643, 812
PspXI	VCTCGAGB	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	1164
PteI	GCGCGC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	1107
RsaNI	GTAC	1 cut(s)	1106
SacII	CCGCGG	1 cut(s)	284
SalI	GTCGAC	1 cut(s)	581
SaqAI	TTAA	2 cut(s)	740, 897
SatI	GCNGC	6 cut(s)	51, 138, 216, 281, 636, 861
Sau3AI	GATC	4 cut(s)	782, 907, 979, 1164
Sau96I	GGNCC	3 cut(s)	493, 643, 812
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	4 cut(s)	202, 410, 556, 679
Sfr274I	CTCGAG	1 cut(s)	295
Sfr303I	CCGCGG	1 cut(s)	284
SgrBI	CCGCGG	1 cut(s)	284
SinI	GGWCC	3 cut(s)	493, 643, 812
SlaI	CTCGAG	1 cut(s)	295
SmlI	CTYRAG	5 cut(s)	295, 750, 847, 896, 1168
SmoI	CTYRAG	5 cut(s)	295, 750, 847, 896, 1168
Sse9I	AATT	8 cut(s)	375, 553, 615, 669, 726, 953, 1031, 1199
SsiI	CCGC	5 cut(s)	50, 137, 150, 281, 283
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	3 cut(s)	38, 993, 1122
TaqI	TCGA	4 cut(s)	296, 512, 582, 868
TasI	AATT	8 cut(s)	375, 553, 615, 669, 726, 953, 1031, 1199
TatI	WGTACW	1 cut(s)	1105
TauI	GCSGC	3 cut(s)	53, 140, 283
TfiI	GAWTC	4 cut(s)	263, 509, 852, 1016
Tru1I	TTAA	2 cut(s)	740, 897
Tru9I	TTAA	2 cut(s)	740, 897
TscAI	CASTG	3 cut(s)	225, 325, 656
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	3 cut(s)	215, 635, 860
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	3 cut(s)	719, 726, 983
TspGWI	ACGGA	1 cut(s)	922
TspRI	CASTG	3 cut(s)	225, 325, 656
Vha464I	CTTAAG	1 cut(s)	896
VpaK11BI	GGWCC	3 cut(s)	493, 643, 812
XapI	RAATTY	1 cut(s)	726
XhoI	CTCGAG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.