Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

23345213 .. 23350284

Gene Structure 5072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0248300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGACCCAACCGCCGGAAACGTACCCGGATCCGCTGTACCCGGACCCGACCACGAAGAACCCGGACTCGAGACTCTCCAATTCCGCGAGGAAATCCAGCGGCTGATCACGGTGCCGCCGGACAACGCCAGCTCCTTCACGGCGCTTCTGGAACTTCCGCCGACCCAAGCCATGGAGCTCCTCCACCTCTCGCCGGAGTCCGAACCTAATCCGGCTCCGGCCGCGGTTTCCGGCGAGCCGCCGCTTCTCAAGCCCTGCGCGCATCCTTTCAATTCCAGCCTCACGTTTCCCAGCAACGCCACCCTAATCGAACGCGCCGCCAAGTTCTCGATCTTCGGCGGCGATCAGTCGCCGGAGACGGGCGCCGTGCCGTCCAATCCCGGCGTCAACTTGGAGAAGGTGAAGAGCGAGCCGGCCGAGTCCGATTCGAACCCTAACTCGTCGCAGGAGACCAAGAGCAACCAAAGGTCGTCGGCCAAGAGAAAGGAGCGAGAAAAGAAGGTCAAGGTATCAATGAAAAAGAGCAAAATTGAAGCTAAGGAAGATGCTGACAAGATTCCCTATGTTCACGTTCGAGCTCGCCGGGGTCAAGCTACAGATAGCCATAGCTTGGCAGAGCGAGCGAGGAGAGAGAAAATAAATGCGAGGATGAAGTTGCTACAGGAGCTTGTCCCAGGATGCAATAAGATTTCGGGTACCGCCTTAGTTCTGGATGAAATCATCAATCATGTGCAGTCCCTACAACGTCAAGTTGAGTTCTTATCGATGAGACTTGCCACAGTCGACCCAAGAATTGATAGCAATCTTGATCATTTATTGGCCACTGAAAGTCTATCTCTAATGCAAAGTAACTTCTCCAGTATGGCGCCACCCATTATGTGGCCAGAACTTCCCATCAATGGGAACAGACAACAGTATCAACAGCAATGGCATTTTGATGCTCTTCATCAGCCAGGTTGGGGGAGGGAAGAAGATAATCATATTTTCATTACTCCAGAGGCCTCACTCATCAGTTGCAACTCTTCGGCAAATTCAGCATCTCTGCACACAGGTCACGTGAAGACGGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

357

Amino Acids

39.22

Weight (kDa)

5.87

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	201 - 248	3e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	206 - 251	3.6e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	695
AccB1I	GGYRCC	4 cut(s)	112, 362, 695, 865
AccB7I	CCANNNNNTGG	3 cut(s)	172, 610, 879
AccI	GTMKAC	1 cut(s)	783
AccII	CGCG	4 cut(s)	87, 224, 260, 315
AclWI	GGATC	2 cut(s)	24, 37
AcoI	YGGCCR	5 cut(s)	219, 414, 474, 819, 881
AcsI	RAATTY	1 cut(s)	1030
AcvI	CACGTG	1 cut(s)	1057
AcyI	GRCGYC	3 cut(s)	363, 384, 866
AfaI	GTAC	3 cut(s)	24, 39, 697
AfiI	CCNNNNNNNGG	9 cut(s)	14, 172, 193, 359, 610, 879, 899, 900, 959
AgsI	TTSAA	2 cut(s)	271, 533
AjnI	CCWGG	2 cut(s)	673, 952
AluBI	AGCT	8 cut(s)	132, 178, 536, 578, 593, 609, 667, 1069
AluI	AGCT	8 cut(s)	132, 178, 536, 578, 593, 609, 667, 1069
Alw21I	GWGCWC	2 cut(s)	180, 580
Alw26I	GTCTC	4 cut(s)	65, 350, 443, 763
AlwI	GGATC	2 cut(s)	24, 37
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	6 cut(s)	219, 414, 474, 819, 881, 999
ApoI	RAATTY	1 cut(s)	1030
Asp718I	GGTACC	1 cut(s)	695
AspLEI	GCGC	6 cut(s)	145, 260, 262, 317, 365, 868
AspS9I	GGNCC	2 cut(s)	4, 44
AsuC2I	CCSGG	5 cut(s)	27, 42, 63, 381, 584
AsuHPI	GGTGA	1 cut(s)	412
AsuII	TTCGAA	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	4, 44
BaeI	ACNNNNGTAYC	2 cut(s)	899, 932
BalI	TGGCCA	2 cut(s)	821, 883
BamHI	GGATCC	1 cut(s)	29
BanI	GGYRCC	4 cut(s)	112, 362, 695, 865
BanII	GRGCYC	2 cut(s)	180, 580
BbrPI	CACGTG	1 cut(s)	1057
BbsI	GAAGAC	1 cut(s)	1067
Bbv12I	GWGCWC	2 cut(s)	180, 580
BccI	CCATC	1 cut(s)	902
BceAI	ACGGC	3 cut(s)	156, 350, 355
BciT130I	CCWGG	2 cut(s)	675, 954
BclI	TGATCA	2 cut(s)	105, 808
BcnI	CCSGG	5 cut(s)	27, 42, 63, 381, 584
BcoDI	GTCTC	4 cut(s)	65, 350, 443, 763
BfmI	CTRYAG	2 cut(s)	594, 659
BfoI	RGCGCY	3 cut(s)	146, 366, 869
BisI	GCNGC	7 cut(s)	101, 116, 222, 239, 242, 318, 340
BlsI	GCNGC	7 cut(s)	102, 117, 223, 240, 243, 319, 341
Bme1390I	CCNGG	7 cut(s)	27, 42, 63, 381, 584, 675, 954
Bme18I	GGWCC	2 cut(s)	4, 44
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	4, 44
BmiI	GGNNCC	8 cut(s)	6, 31, 46, 114, 216, 364, 697, 867
BmrFI	CCNGG	7 cut(s)	27, 42, 63, 381, 584, 675, 954
BmsI	GCATC	5 cut(s)	271, 535, 668, 928, 1046
BpiI	GAAGAC	1 cut(s)	1067
BpmI	CTGGAG	2 cut(s)	841, 978
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	5 cut(s)	27, 42, 63, 381, 584
Bsa29I	ATCGAT	1 cut(s)	764
BsaAI	YACGTR	1 cut(s)	1057
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	3 cut(s)	363, 384, 866
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	4 cut(s)	171, 222, 583, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	9 cut(s)	14, 172, 193, 359, 610, 879, 899, 900, 959
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	858
Bse3DI	GCAATG	1 cut(s)	932
Bse8I	GATNNNNATC	1 cut(s)	801
BseBI	CCWGG	2 cut(s)	675, 954
BseCI	ATCGAT	1 cut(s)	764
BseDI	CCNNGG	4 cut(s)	171, 222, 583, 673
BseGI	GGATG	4 cut(s)	262, 654, 683, 718
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	9 cut(s)	14, 172, 193, 359, 610, 879, 899, 900, 959
BseMI	GCAATG	1 cut(s)	932
BseNI	ACTGG	1 cut(s)	858
BsePI	GCGCGC	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	170, 640
BseX3I	CGGCCG	2 cut(s)	219, 414
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	2 cut(s)	752, 1028
Bsh1236I	CGCG	4 cut(s)	87, 224, 260, 315
Bsh1285I	CGRYCG	2 cut(s)	222, 417
BshFI	GGCC	6 cut(s)	221, 416, 476, 821, 883, 1001
BshNI	GGYRCC	4 cut(s)	112, 362, 695, 865
BshVI	ATCGAT	1 cut(s)	764
BsiEI	CGRYCG	2 cut(s)	222, 417
BsiHKAI	GWGCWC	2 cut(s)	180, 580
BsiHKCI	CYCGRG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	656, 721
BslI	CCNNNNNNNGG	9 cut(s)	14, 172, 193, 359, 610, 879, 899, 900, 959
BsmAI	GTCTC	4 cut(s)	65, 350, 443, 763
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	2 cut(s)	656, 721
BsnI	GGCC	6 cut(s)	221, 416, 476, 821, 883, 1001
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	180, 580
Bsp143I	GATC	5 cut(s)	29, 105, 330, 343, 808
Bsp19I	CCATGG	1 cut(s)	171
BspANI	GGCC	6 cut(s)	221, 416, 476, 821, 883, 1001
BspDI	ATCGAT	1 cut(s)	764
BspFNI	CGCG	4 cut(s)	87, 224, 260, 315
BspLI	GGNNCC	8 cut(s)	6, 31, 46, 114, 216, 364, 697, 867
BspPI	GGATC	2 cut(s)	24, 37
BspQI	GCTCTTC	2 cut(s)	398, 948
BspT104I	TTCGAA	1 cut(s)	428
BspT107I	GGYRCC	4 cut(s)	112, 362, 695, 865
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	932
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	858
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	4 cut(s)	171, 222, 583, 673
BssHII	GCGCGC	1 cut(s)	258
BssMI	GATC	5 cut(s)	29, 105, 330, 343, 808
BssNI	GRCGYC	3 cut(s)	363, 384, 866
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	675, 954
Bst4CI	ACNGT	3 cut(s)	112, 781, 915
Bst6I	CTCTTC	3 cut(s)	398, 948, 1027
BstACI	GRCGYC	3 cut(s)	363, 384, 866
BstBAI	YACGTR	1 cut(s)	1057
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	7 cut(s)	130, 236, 260, 410, 414, 580, 621
BstDEI	CTNAG	2 cut(s)	537, 703
BstDSI	CCRYGG	2 cut(s)	171, 222
BstF5I	GGATG	4 cut(s)	262, 654, 683, 718
BstFNI	CGCG	4 cut(s)	87, 224, 260, 315
BstH2I	RGCGCY	3 cut(s)	146, 366, 869
BstHHI	GCGC	6 cut(s)	145, 260, 262, 317, 365, 868
BstKTI	GATC	5 cut(s)	32, 108, 333, 346, 811
BstMAI	GTCTC	4 cut(s)	65, 350, 443, 763
BstMBI	GATC	5 cut(s)	29, 105, 330, 343, 808
BstMCI	CGRYCG	2 cut(s)	222, 417
BstMWI	GCNNNNNNNGC	6 cut(s)	221, 250, 259, 620, 664, 1034
BstNI	CCWGG	2 cut(s)	675, 954
BstSCI	CCNGG	7 cut(s)	25, 40, 61, 379, 582, 673, 952
BstSFI	CTRYAG	2 cut(s)	594, 659
BstUI	CGCG	4 cut(s)	87, 224, 260, 315
BstV2I	GAAGAC	1 cut(s)	1067
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BstZI	CGGCCG	2 cut(s)	219, 414
Bsu15I	ATCGAT	1 cut(s)	764
BsuRI	GGCC	6 cut(s)	221, 416, 476, 821, 883, 1001
BsuTUI	ATCGAT	1 cut(s)	764
BtgI	CCRYGG	2 cut(s)	171, 222
BtsCI	GGATG	4 cut(s)	262, 654, 683, 718
BtsIMutI	CAGTG	1 cut(s)	822
Cac8I	GCNNGC	7 cut(s)	130, 236, 260, 410, 414, 580, 621
CaiI	CAGNNNCTG	1 cut(s)	103
CfoI	GCGC	6 cut(s)	145, 260, 262, 317, 365, 868
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	4, 44
Cfr42I	CCGCGG	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	764
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	23, 38, 696
CviAII	CATG	2 cut(s)	172, 728
CviQI	GTAC	3 cut(s)	23, 38, 696
DdeI	CTNAG	2 cut(s)	537, 703
DinI	GGCGCC	2 cut(s)	364, 867
DpnI	GATC	5 cut(s)	31, 107, 332, 345, 810
DpnII	GATC	5 cut(s)	29, 105, 330, 343, 808
EaeI	YGGCCR	5 cut(s)	219, 414, 474, 819, 881
EagI	CGGCCG	2 cut(s)	219, 414
Eam1104I	CTCTTC	3 cut(s)	398, 948, 1027
EarI	CTCTTC	3 cut(s)	398, 948, 1027
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	2 cut(s)	178, 578
EclXI	CGGCCG	2 cut(s)	219, 414
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	1001
Eco24I	GRGCYC	2 cut(s)	180, 580
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	2 cut(s)	4, 44
Eco52I	CGGCCG	2 cut(s)	219, 414
Eco53kI	GAGCTC	2 cut(s)	178, 578
Eco72I	CACGTG	1 cut(s)	1057
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	2 cut(s)	178, 578
EcoRII	CCWGG	2 cut(s)	673, 952
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	180, 580
EgeI	GGCGCC	2 cut(s)	364, 867
EheI	GGCGCC	2 cut(s)	364, 867
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	2 cut(s)	175, 731
FaiI	YATR	7 cut(s)	173, 564, 606, 729, 863, 878, 981
FaqI	GGGAC	2 cut(s)	656, 721
FatI	CATG	2 cut(s)	171, 727
FbaI	TGATCA	2 cut(s)	105, 808
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	7 cut(s)	101, 116, 222, 239, 242, 318, 340
FokI	GGATG	4 cut(s)	249, 661, 690, 725
FriOI	GRGCYC	2 cut(s)	180, 580
Fsp4HI	GCNGC	7 cut(s)	101, 116, 222, 239, 242, 318, 340
GlaI	GCGC	6 cut(s)	144, 259, 261, 316, 364, 867
GluI	GCNGC	7 cut(s)	101, 116, 222, 239, 242, 318, 340
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	2 cut(s)	841, 978
HaeII	RGCGCY	3 cut(s)	146, 366, 869
HaeIII	GGCC	6 cut(s)	221, 416, 476, 821, 883, 1001
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	6 cut(s)	145, 260, 262, 317, 365, 868
Hin1I	GRCGYC	3 cut(s)	363, 384, 866
Hin1II	CATG	2 cut(s)	175, 731
Hin6I	GCGC	6 cut(s)	143, 258, 260, 315, 363, 866
HinP1I	GCGC	6 cut(s)	143, 258, 260, 315, 363, 866
HincII	GTYRAC	2 cut(s)	388, 784
HindII	GTYRAC	2 cut(s)	388, 784
HinfI	GANTC	6 cut(s)	66, 73, 197, 419, 425, 556
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	3 cut(s)	388, 568, 784
Hpy188I	TCNGA	2 cut(s)	202, 424
Hpy188III	TCNNGA	6 cut(s)	70, 149, 328, 710, 806, 995
Hpy8I	GTNNAC	3 cut(s)	388, 568, 784
Hpy99I	CGWCG	2 cut(s)	445, 475
HpyAV	CCTTC	3 cut(s)	145, 391, 493
HpyCH4III	ACNGT	3 cut(s)	112, 781, 915
HpyCH4IV	ACGT	5 cut(s)	21, 284, 570, 745, 1056
HpyCH4V	TGCA	5 cut(s)	681, 733, 844, 1017, 1045
HpyF10VI	GCNNNNNNNGC	6 cut(s)	221, 250, 259, 620, 664, 1034
HpyF3I	CTNAG	2 cut(s)	537, 703
HpySE526I	ACGT	5 cut(s)	21, 284, 570, 745, 1056
Hsp92I	GRCGYC	3 cut(s)	363, 384, 866
Hsp92II	CATG	2 cut(s)	175, 731
HspAI	GCGC	6 cut(s)	143, 258, 260, 315, 363, 866
KasI	GGCGCC	2 cut(s)	362, 865
KpnI	GGTACC	1 cut(s)	699
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Ksp22I	TGATCA	2 cut(s)	105, 808
KspI	CCGCGG	1 cut(s)	225
Kzo9I	GATC	5 cut(s)	29, 105, 330, 343, 808
LguI	GCTCTTC	2 cut(s)	398, 948
LmnI	GCTCC	7 cut(s)	137, 175, 183, 220, 487, 664, 1066
LweI	GCATC	5 cut(s)	271, 535, 668, 928, 1046
MaeII	ACGT	5 cut(s)	21, 284, 570, 745, 1056
MaeIII	GTNAC	2 cut(s)	848, 1052
MalI	GATC	5 cut(s)	31, 107, 332, 345, 810
MboI	GATC	5 cut(s)	29, 105, 330, 343, 808
MboII	GAAGA	9 cut(s)	68, 325, 415, 554, 935, 980, 983, 1014, 1072
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	180, 580
MlsI	TGGCCA	2 cut(s)	821, 883
MluCI	AATT	5 cut(s)	80, 271, 528, 792, 1030
MluNI	TGGCCA	2 cut(s)	821, 883
Mly113I	GGCGCC	2 cut(s)	363, 866
MlyI	GAGTC	4 cut(s)	60, 67, 206, 428
MnlI	CCTC	9 cut(s)	82, 191, 197, 290, 618, 639, 957, 991, 1012
Mox20I	TGGCCA	2 cut(s)	821, 883
MroNI	GCCGGC	1 cut(s)	412
MscI	TGGCCA	2 cut(s)	821, 883
MslI	CAYNNNNRTG	1 cut(s)	936
Msp20I	TGGCCA	2 cut(s)	821, 883
MspA1I	CMGCKG	3 cut(s)	35, 100, 224
MspR9I	CCNGG	7 cut(s)	27, 42, 63, 381, 584, 675, 954
MvaI	CCWGG	2 cut(s)	675, 954
MvnI	CGCG	4 cut(s)	87, 224, 260, 315
MwoI	GCNNNNNNNGC	6 cut(s)	221, 250, 259, 620, 664, 1034
NaeI	GCCGGC	1 cut(s)	414
NarI	GGCGCC	2 cut(s)	363, 866
NciI	CCSGG	5 cut(s)	27, 42, 63, 381, 584
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	5 cut(s)	29, 105, 330, 343, 808
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	2 cut(s)	175, 731
NlaIV	GGNNCC	8 cut(s)	6, 31, 46, 114, 216, 364, 697, 867
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	1052
NspV	TTCGAA	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	68
PauI	GCGCGC	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	1001
PciSI	GCTCTTC	2 cut(s)	398, 948
PdiI	GCCGGC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	425, 556
PflMI	CCANNNNNTGG	3 cut(s)	172, 610, 879
PkrI	GCNGC	7 cut(s)	102, 117, 223, 240, 243, 319, 341
PleI	GAGTC	4 cut(s)	60, 67, 205, 427
PluTI	GGCGCC	2 cut(s)	366, 869
PmaCI	CACGTG	1 cut(s)	1057
PmlI	CACGTG	1 cut(s)	1057
PpsI	GAGTC	4 cut(s)	60, 67, 205, 427
Ppu21I	YACGTR	1 cut(s)	1057
Psp124BI	GAGCTC	2 cut(s)	180, 580
Psp6I	CCWGG	2 cut(s)	673, 952
PspCI	CACGTG	1 cut(s)	1057
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	2 cut(s)	673, 952
PspN4I	GGNNCC	8 cut(s)	6, 31, 46, 114, 216, 364, 697, 867
PspPI	GGNCC	2 cut(s)	4, 44
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	29
PteI	GCGCGC	1 cut(s)	258
RsaI	GTAC	3 cut(s)	24, 39, 697
RsaNI	GTAC	3 cut(s)	23, 38, 696
RseI	CAYNNNNRTG	1 cut(s)	936
SacI	GAGCTC	2 cut(s)	180, 580
SacII	CCGCGG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	782
SapI	GCTCTTC	2 cut(s)	398, 948
SatI	GCNGC	7 cut(s)	101, 116, 222, 239, 242, 318, 340
Sau3AI	GATC	5 cut(s)	29, 105, 330, 343, 808
Sau96I	GGNCC	2 cut(s)	4, 44
SchI	GAGTC	4 cut(s)	60, 67, 206, 428
ScrFI	CCNGG	7 cut(s)	27, 42, 63, 381, 584, 675, 954
SduI	GDGCHC	2 cut(s)	180, 580
SfaNI	GCATC	5 cut(s)	271, 535, 668, 928, 1046
SfcI	CTRYAG	2 cut(s)	594, 659
SfoI	GGCGCC	2 cut(s)	364, 867
Sfr274I	CTCGAG	1 cut(s)	68
Sfr303I	CCGCGG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	428
SgrBI	CCGCGG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	4, 44
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	2 cut(s)	68, 248
SmoI	CTYRAG	2 cut(s)	68, 248
Sse9I	AATT	5 cut(s)	80, 271, 528, 792, 1030
SseBI	AGGCCT	1 cut(s)	1001
SspDI	GGCGCC	2 cut(s)	362, 865
SstI	GAGCTC	2 cut(s)	180, 580
StuI	AGGCCT	1 cut(s)	1001
StyD4I	CCNGG	7 cut(s)	25, 40, 61, 379, 582, 673, 952
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	112, 781, 915
TaiI	ACGT	5 cut(s)	24, 287, 573, 748, 1059
TaqI	TCGA	7 cut(s)	69, 309, 329, 428, 574, 764, 783
TasI	AATT	5 cut(s)	80, 271, 528, 792, 1030
TauI	GCSGC	7 cut(s)	103, 118, 224, 241, 244, 320, 342
TfiI	GAWTC	2 cut(s)	425, 556
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	1052
Tsp45I	GTSAC	1 cut(s)	1052
TspDTI	ATGAA	5 cut(s)	530, 665, 729, 935, 976
TspRI	CASTG	1 cut(s)	829
Van91I	CCANNNNNTGG	3 cut(s)	172, 610, 879
VpaK11BI	GGWCC	2 cut(s)	4, 44
XapI	RAATTY	1 cut(s)	1030
XcmI	CCANNNNNNNNNTGG	1 cut(s)	876
XhoI	CTCGAG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.