Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

8638768 .. 8657689

Gene Structure 18922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0065200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGACCAGAGTGGATCTGTTCCCTCAGGAAGGAAGGCCAAGGATGTTAAGGTTCCTGACCAGAGTGGATCTGGAAATCCCCCAAGAAGGAAAGCCAATGAGGTTAAGGACCAGAGTAGATCTGGAATTCCCTCAGGAAGGAAGGCCAAGAAGGATGTTAAGGATCCTGACCAGAGTGGATCTGGAAATCCCCCAGGAAGGAAAGCCAATGTGGTTAAGGACCAGAGTGGATCTGTTCCCTCAGGAAGGAAGGCCAAGGATGTTGAGGACCAGAGTAGATCTGGAATTCCCTCAGGAAGGAAGGCCAAGAAGGATGTTAAGGATCCTGACCAGAGTGGATCTGGAAATCCCCCAGGAAGGAAAGCCAATGTGGTTAAGATCGAGATTGATGGAGAATTCAAACGATACCCGTTCTTTCCTTCCATGCCTTGCTCAAGTAACTTTCATAAACAGCAGAGGTTGATAGAGATGGTGGTGTCTTTGGATGAAAGACACGTCGGGTGGAGGATTCAAGGAAGCATATCAAGCGTGCAGCTGAGATTCTTTGCCACCAACTTTTCAAGGAATCCCTTAAAGGATATTTCCAATAAGGGAGGTGGCTCCTCCTCCTCCTCAAAATCAAAGAATATTGCTGGAAAGGAAACCAAAATATCTAATTCTGAAGCCACTGTGTCTGCGGATATTGCGTCATTTTCTTTTATGAAGGGAGTGTGCAAGGGTGGTTCTGTTGATGATCAACCTTTGTCTGGTATTATTCATAATGCCACCCTGAGCAGTTCCAATAATGTGTGTCCTAGTAGTAGTTCGTTTGATGCTACCTTTTGTCACACTCCTCCTGAGGAGAATATGGAGCAATTTGGAATTAACAAGGGCTTTGAGGAAGCAATTGCTGAAGTTGATACGCTGGGAGAGAAATCATACAAGGACAGCACTGTAATCATGCAACTTCTGAGGGACAACCTCACTGTTTGGACTACAGATTTGCAGAAACATACTAATTTCTTTGTGGGAATGGATGCTGTTACATTGAGAACTGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

347

Amino Acids

37.35

Weight (kDa)

9.4

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
14-3-3	PF00244	289 - 325	8.9e-11	14-3-3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	9 cut(s)	22, 76, 158, 171, 187, 238, 317, 330, 346
AcsI	RAATTY	3 cut(s)	126, 285, 395
AcuI	CTGAAG	2 cut(s)	681, 912
AfiI	CCNNNNNNNGG	8 cut(s)	30, 87, 138, 198, 246, 297, 357, 746
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	3 cut(s)	400, 512, 561
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	2 cut(s)	193, 352
AluBI	AGCT	1 cut(s)	535
AluI	AGCT	1 cut(s)	535
AlwI	GGATC	9 cut(s)	22, 76, 158, 171, 187, 238, 317, 330, 346
AoxI	GGCC	4 cut(s)	36, 144, 252, 303
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	3 cut(s)	126, 285, 395
ArsI	GACNNNNNNTTYG	2 cut(s)	964, 996
AspS9I	GGNCC	4 cut(s)	4, 109, 220, 268
AvaII	GGWCC	4 cut(s)	4, 109, 220, 268
AxyI	CCTNAGG	5 cut(s)	25, 133, 241, 292, 837
BamHI	GGATCC	2 cut(s)	163, 322
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	2 cut(s)	383, 463
BciT130I	CCWGG	2 cut(s)	195, 354
BclI	TGATCA	1 cut(s)	733
BfaI	CTAG	1 cut(s)	795
BfmI	CTRYAG	1 cut(s)	975
BglII	AGATCT	2 cut(s)	119, 278
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	195, 354
Bme18I	GGWCC	4 cut(s)	4, 109, 220, 268
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	4 cut(s)	4, 109, 220, 268
BmiI	GGNNCC	4 cut(s)	54, 165, 324, 601
BmrFI	CCNGG	2 cut(s)	195, 354
BmsI	GCATC	2 cut(s)	802, 1006
Bpu10I	CCTNAGC	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	418
BsaJI	CCNNGG	4 cut(s)	39, 193, 255, 352
Bsc4I	CCNNNNNNNGG	8 cut(s)	30, 87, 138, 198, 246, 297, 357, 746
Bse1I	ACTGG	1 cut(s)	1039
Bse21I	CCTNAGG	5 cut(s)	25, 133, 241, 292, 837
BseBI	CCWGG	2 cut(s)	195, 354
BseDI	CCNNGG	4 cut(s)	39, 193, 255, 352
BseGI	GGATG	6 cut(s)	49, 160, 265, 319, 490, 1021
BseLI	CCNNNNNNNGG	8 cut(s)	30, 87, 138, 198, 246, 297, 357, 746
BseMII	CTCAG	8 cut(s)	39, 147, 255, 306, 527, 761, 828, 941
BseNI	ACTGG	1 cut(s)	1039
BseRI	GAGGAG	6 cut(s)	592, 595, 598, 601, 822, 854
BseXI	GCAGC	1 cut(s)	544
BseYI	CCCAGC	1 cut(s)	904
BsgI	GTGCAG	1 cut(s)	551
BshFI	GGCC	4 cut(s)	38, 146, 254, 305
BslFI	GGGAC	1 cut(s)	968
BslI	CCNNNNNNNGG	8 cut(s)	30, 87, 138, 198, 246, 297, 357, 746
BsmFI	GGGAC	1 cut(s)	968
BsnI	GGCC	4 cut(s)	38, 146, 254, 305
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	4 cut(s)	38, 146, 254, 305
BspCNI	CTCAG	8 cut(s)	38, 146, 254, 305, 528, 762, 829, 942
BspLI	GGNNCC	4 cut(s)	54, 165, 324, 601
BspPI	GGATC	9 cut(s)	22, 76, 158, 171, 187, 238, 317, 330, 346
BsrI	ACTGG	1 cut(s)	1039
BssECI	CCNNGG	4 cut(s)	39, 193, 255, 352
BssT1I	CCWWGG	2 cut(s)	39, 255
Bst2UI	CCWGG	2 cut(s)	195, 354
Bst4CI	ACNGT	3 cut(s)	670, 934, 967
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	8 cut(s)	25, 133, 241, 292, 536, 770, 837, 950
BstENI	CCTNNNNNAGG	4 cut(s)	28, 136, 244, 295
BstF5I	GGATG	6 cut(s)	49, 160, 265, 319, 490, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	525, 683
BstNI	CCWGG	2 cut(s)	195, 354
BstSCI	CCNGG	2 cut(s)	193, 352
BstSFI	CTRYAG	1 cut(s)	975
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	9 cut(s)	14, 68, 119, 163, 179, 230, 278, 322, 338
BstYI	RGATCY	9 cut(s)	14, 68, 119, 163, 179, 230, 278, 322, 338
Bsu36I	CCTNAGG	5 cut(s)	25, 133, 241, 292, 837
BsuRI	GGCC	4 cut(s)	38, 146, 254, 305
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	6 cut(s)	49, 160, 265, 319, 490, 1021
BtsIMutI	CAGTG	3 cut(s)	666, 930, 963
Cac8I	GCNNGC	1 cut(s)	530
Cfr13I	GGNCC	4 cut(s)	4, 109, 220, 268
CseI	GACGC	1 cut(s)	675
CviAII	CATG	2 cut(s)	424, 940
DdeI	CTNAG	8 cut(s)	25, 133, 241, 292, 536, 770, 837, 950
Eco130I	CCWWGG	2 cut(s)	39, 255
Eco47I	GGWCC	4 cut(s)	4, 109, 220, 268
Eco57I	CTGAAG	2 cut(s)	681, 912
Eco81I	CCTNAGG	5 cut(s)	25, 133, 241, 292, 837
EcoNI	CCTNNNNNAGG	4 cut(s)	28, 136, 244, 295
EcoRI	GAATTC	3 cut(s)	126, 285, 395
EcoRII	CCWGG	2 cut(s)	193, 352
EcoT14I	CCWWGG	2 cut(s)	39, 255
ErhI	CCWWGG	2 cut(s)	39, 255
FaeI	CATG	2 cut(s)	427, 943
FaiI	YATR	9 cut(s)	425, 447, 521, 701, 759, 848, 919, 941, 993
FaqI	GGGAC	1 cut(s)	968
FatI	CATG	2 cut(s)	423, 939
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	6 cut(s)	56, 167, 272, 326, 497, 1028
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	1 cut(s)	795
GluI	GCNGC	1 cut(s)	533
GsaI	CCCAGC	1 cut(s)	908
HaeIII	GGCC	4 cut(s)	38, 146, 254, 305
HgaI	GACGC	1 cut(s)	675
Hin1II	CATG	2 cut(s)	427, 943
HinfI	GANTC	3 cut(s)	508, 540, 565
Hpy188I	TCNGA	2 cut(s)	661, 951
Hpy99I	CGWCG	1 cut(s)	500
HpyCH4III	ACNGT	3 cut(s)	670, 934, 967
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	532, 714, 943, 985
HpyF10VI	GCNNNNNNNGC	2 cut(s)	525, 683
HpyF3I	CTNAG	8 cut(s)	25, 133, 241, 292, 536, 770, 837, 950
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	2 cut(s)	427, 943
Ksp22I	TGATCA	1 cut(s)	733
LmnI	GCTCC	2 cut(s)	605, 850
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	2 cut(s)	802, 1006
MaeI	CTAG	1 cut(s)	795
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	3 cut(s)	437, 824, 1021
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	9 cut(s)	14, 68, 119, 163, 179, 230, 278, 322, 338
MluCI	AATT	8 cut(s)	126, 285, 395, 655, 854, 861, 885, 997
MseI	TTAA	8 cut(s)	48, 105, 159, 216, 318, 375, 572, 864
MspA1I	CMGCKG	1 cut(s)	535
MspR9I	CCNGG	2 cut(s)	195, 354
MunI	CAATTG	1 cut(s)	885
MvaI	CCWGG	2 cut(s)	195, 354
MwoI	GCNNNNNNNGC	2 cut(s)	525, 683
NlaIII	CATG	2 cut(s)	427, 943
NlaIV	GGNNCC	4 cut(s)	54, 165, 324, 601
NmuCI	GTSAC	1 cut(s)	824
PfeI	GAWTC	3 cut(s)	508, 540, 565
PkrI	GCNGC	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	193, 352
PspFI	CCCAGC	1 cut(s)	904
PspGI	CCWGG	2 cut(s)	193, 352
PspN4I	GGNNCC	4 cut(s)	54, 165, 324, 601
PspPI	GGNCC	4 cut(s)	4, 109, 220, 268
PsuI	RGATCY	9 cut(s)	14, 68, 119, 163, 179, 230, 278, 322, 338
PvuII	CAGCTG	1 cut(s)	535
SaqAI	TTAA	8 cut(s)	48, 105, 159, 216, 318, 375, 572, 864
SatI	GCNGC	1 cut(s)	533
Sau96I	GGNCC	4 cut(s)	4, 109, 220, 268
ScrFI	CCNGG	2 cut(s)	195, 354
SetI	ASST	9 cut(s)	54, 105, 461, 498, 537, 598, 742, 821, 963
SfaNI	GCATC	2 cut(s)	802, 1006
SfcI	CTRYAG	1 cut(s)	975
SinI	GGWCC	4 cut(s)	4, 109, 220, 268
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	8 cut(s)	126, 285, 395, 655, 854, 861, 885, 997
SsiI	CCGC	1 cut(s)	677
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	1 cut(s)	795
StyD4I	CCNGG	2 cut(s)	193, 352
StyI	CCWWGG	2 cut(s)	39, 255
TaaI	ACNGT	3 cut(s)	670, 934, 967
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	1 cut(s)	381
TasI	AATT	8 cut(s)	126, 285, 395, 655, 854, 861, 885, 997
TfiI	GAWTC	3 cut(s)	508, 540, 565
Tru1I	TTAA	8 cut(s)	48, 105, 159, 216, 318, 375, 572, 864
Tru9I	TTAA	8 cut(s)	48, 105, 159, 216, 318, 375, 572, 864
TscAI	CASTG	3 cut(s)	673, 937, 970
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	4 cut(s)	434, 501, 716, 746
TspRI	CASTG	3 cut(s)	673, 937, 970
VpaK11BI	GGWCC	4 cut(s)	4, 109, 220, 268
XagI	CCTNNNNNAGG	4 cut(s)	28, 136, 244, 295
XapI	RAATTY	3 cut(s)	126, 285, 395
XcmI	CCANNNNNNNNNTGG	5 cut(s)	68, 119, 179, 278, 338
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.