Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

69581018 .. 69584520

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0570300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGATTAGGCATACTAGTTCCTTCTCCATGACCAAGGGTGAAGTGCAAGTTAACCTCTTGGCAAATTCAGCACCCCGTCCGTCCTCTGTTAAAATTCCGGAGACAGGTATGGACACTGCCAAAAATATTTCGGAGTCAAGTCAAGTGTTGAAAAAGAGAACAAGAAGGAGACATAGGAGGAAACCGAATCTAATGCAAAATACTGGCGTAGTTCATAATTTGCCTCAGGAACATGGGCAGGGTGACACTAAATATATAAAAAGATTGTCAACTTTAAGTTTATCAGATGAAAGAGGTAGCGATGTATTAGTTATTTCATCTGGAGTGGTTAAAACTAATTGTGAAGAGGACATCAGCTCAGGAATTTCACATGGCTCAATTGTGAGAGAACAGTTTAGGTATACAGGGAAAAAACTTCTTATTCTTGACATTAATGGACTTATTGCGGATATAGTCTCTCCTCCTCCAAAGGGATTTGCATCTGACATAAGGATTGCAGGACGAGCAATTTTCAAGAGGCCATACTATCTTGATTTTCTTAAGTTCTGCTTTGAGCGTTTTGAAGTGGGTGTGTGGTCTTCAAGATCCAAGAAAATTGTGGAAAGAGTGGTTGACTATCTAATGGGTGATCTAAAGCACAAGTTGCTGTTTTGTTGGGATCTATCCCACTGCACTACAACAGGGTTCAGAACTCTAGAAAATAAGCACAAGACCTTGGTGTTTAAGGATCTGAGGAGAATTTGGGAAGAAGATGACTCTAGTCTTCCATGGGAGAAGGGCGTATATAATGAATCTAATACGTTATTGTTGGATGATTCTCCGTACAAAGCCCTGCTTAATCCTGCACATACTGGGGTCTTTCCTTATCCATACACGTTTCATGGAGGGTGCGACAATGCGTTAGGTCCTGGAGGTCGTCTTCGGACCTATTTGGAAAAGTTGGCCGCAGCTGAAAATCTACAAGAGTTTGTAGACCAACATCCATTTGGTCAAAGACCTATTACTGAAAGAAGTGCATCTTGGGACTTTTACCTCAGGGTACTCAATACGGTGTATTCCGTAAAAACCAACCAGATAACCTGGAATTCTACTTGTAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

367

Amino Acids

41.79

Weight (kDa)

9.34

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	138 - 319	4.7e-16	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	401, 972
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	2 cut(s)	446, 945
AclWI	GGATC	3 cut(s)	579, 666, 735
AcoI	YGGCCR	1 cut(s)	942
AcsI	RAATTY	5 cut(s)	64, 93, 363, 738, 1084
AfaI	GTAC	2 cut(s)	824, 1041
AfiI	CCNNNNNNNGG	2 cut(s)	104, 470
AflII	CTTAAG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	873
AgsI	TTSAA	4 cut(s)	151, 514, 563, 582
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	907, 1079
AjuI	GAANNNNNNNTTGG	2 cut(s)	1003, 1035
AluBI	AGCT	2 cut(s)	357, 950
AluI	AGCT	2 cut(s)	357, 950
Alw26I	GTCTC	3 cut(s)	95, 163, 460
AlwI	GGATC	3 cut(s)	579, 666, 735
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	2 cut(s)	518, 942
ApeKI	GCWGC	1 cut(s)	947
ApoI	RAATTY	5 cut(s)	64, 93, 363, 738, 1084
AseI	ATTAAT	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	905, 924
AsuHPI	GGTGA	3 cut(s)	50, 254, 638
AvaII	GGWCC	2 cut(s)	905, 924
AxyI	CCTNAGG	2 cut(s)	225, 1034
BbsI	GAAGAC	3 cut(s)	570, 755, 911
BbvI	GCAGC	1 cut(s)	959
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	909, 1081
BcoDI	GTCTC	3 cut(s)	95, 163, 460
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	3 cut(s)	15, 695, 759
BfrI	CTTAAG	1 cut(s)	539
BisI	GCNGC	2 cut(s)	945, 948
BlsI	GCNGC	2 cut(s)	946, 949
Bme1390I	CCNGG	2 cut(s)	909, 1081
Bme18I	GGWCC	2 cut(s)	905, 924
BmgT120I	GGNCC	2 cut(s)	905, 924
BmrFI	CCNGG	2 cut(s)	909, 1081
BmrI	ACTGGG	1 cut(s)	861
BmsI	GCATC	2 cut(s)	488, 1025
BmuI	ACTGGG	1 cut(s)	861
BoxI	GACNNNNGTC	1 cut(s)	759
BpiI	GAAGAC	3 cut(s)	570, 755, 911
BpmI	CTGGAG	2 cut(s)	342, 930
Bpu10I	CCTNAGC	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	33, 714, 767
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 470
Bse1I	ACTGG	2 cut(s)	208, 856
Bse21I	CCTNAGG	2 cut(s)	225, 1034
Bse8I	GATNNNNATC	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	909, 1081
BseDI	CCNNGG	3 cut(s)	33, 714, 767
BseGI	GGATG	2 cut(s)	817, 979
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	104, 470
BseMII	CTCAG	4 cut(s)	239, 372, 722, 1048
BseNI	ACTGG	2 cut(s)	208, 856
BseRI	GAGGAG	3 cut(s)	450, 453, 748
BseXI	GCAGC	1 cut(s)	959
BsgI	GTGCAG	2 cut(s)	655, 828
BshFI	GGCC	2 cut(s)	520, 944
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	1037
BslI	CCNNNNNNNGG	2 cut(s)	104, 470
BsmAI	GTCTC	3 cut(s)	95, 163, 460
BsmFI	GGGAC	1 cut(s)	1037
BsnI	GGCC	2 cut(s)	520, 944
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	584, 628, 658, 727
Bsp19I	CCATGG	1 cut(s)	767
BspACI	CCGC	2 cut(s)	446, 945
BspANI	GGCC	2 cut(s)	520, 944
BspCNI	CTCAG	4 cut(s)	238, 371, 723, 1047
BspEI	TCCGGA	1 cut(s)	97
BspPI	GGATC	3 cut(s)	579, 666, 735
BspTI	CTTAAG	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	208, 856
BssECI	CCNNGG	3 cut(s)	33, 714, 767
BssMI	GATC	4 cut(s)	584, 628, 658, 727
BssNAI	GTATAC	1 cut(s)	402
BssT1I	CCWWGG	3 cut(s)	33, 714, 767
Bst1107I	GTATAC	1 cut(s)	402
Bst2UI	CCWGG	2 cut(s)	909, 1081
Bst4CI	ACNGT	2 cut(s)	393, 1051
Bst6I	CTCTTC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	539
BstAPI	GCANNNNNTGC	1 cut(s)	643
BstDEI	CTNAG	4 cut(s)	225, 358, 731, 1034
BstDSI	CCRYGG	1 cut(s)	767
BstF5I	GGATG	2 cut(s)	817, 979
BstKTI	GATC	4 cut(s)	587, 631, 661, 730
BstMAI	GTCTC	3 cut(s)	95, 163, 460
BstMBI	GATC	4 cut(s)	584, 628, 658, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 503, 643
BstNI	CCWGG	2 cut(s)	909, 1081
BstPAI	GACNNNNGTC	1 cut(s)	759
BstSCI	CCNGG	2 cut(s)	907, 1079
BstV1I	GCAGC	1 cut(s)	959
BstV2I	GAAGAC	3 cut(s)	570, 755, 911
BstX2I	RGATCY	3 cut(s)	584, 658, 727
BstYI	RGATCY	3 cut(s)	584, 658, 727
BstZ17I	GTATAC	1 cut(s)	402
Bsu36I	CCTNAGG	2 cut(s)	225, 1034
BsuRI	GGCC	2 cut(s)	520, 944
BtgI	CCRYGG	1 cut(s)	767
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	817, 979
BtsI	GCAGTG	2 cut(s)	114, 667
BtsIMutI	CAGTG	2 cut(s)	114, 667
Cfr13I	GGNCC	2 cut(s)	905, 924
Csp6I	GTAC	2 cut(s)	823, 1040
CviAII	CATG	5 cut(s)	28, 233, 371, 768, 881
CviJI	RGCY	6 cut(s)	357, 375, 520, 830, 944, 950
CviKI_1	RGCY	6 cut(s)	357, 375, 520, 830, 944, 950
CviQI	GTAC	2 cut(s)	823, 1040
DdeI	CTNAG	4 cut(s)	225, 358, 731, 1034
DpnI	GATC	4 cut(s)	586, 630, 660, 729
DpnII	GATC	4 cut(s)	584, 628, 658, 727
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	3 cut(s)	33, 714, 767
Eco47I	GGWCC	2 cut(s)	905, 924
Eco81I	CCTNAGG	2 cut(s)	225, 1034
EcoO109I	RGGNCCY	1 cut(s)	905
EcoRI	GAATTC	1 cut(s)	1084
EcoRII	CCWGG	2 cut(s)	907, 1079
EcoT14I	CCWWGG	3 cut(s)	33, 714, 767
ErhI	CCWWGG	3 cut(s)	33, 714, 767
FaeI	CATG	5 cut(s)	31, 236, 374, 771, 884
FalI	AAGNNNNNCTT	6 cut(s)	533, 565, 819, 851, 1003, 1035
FaqI	GGGAC	1 cut(s)	1037
FatI	CATG	5 cut(s)	27, 232, 370, 767, 880
FblI	GTMKAC	2 cut(s)	401, 972
Fnu4HI	GCNGC	2 cut(s)	945, 948
FokI	GGATG	2 cut(s)	824, 966
Fsp4HI	GCNGC	2 cut(s)	945, 948
FspBI	CTAG	3 cut(s)	15, 695, 759
GluI	GCNGC	2 cut(s)	945, 948
GsuI	CTGGAG	2 cut(s)	342, 930
HaeIII	GGCC	2 cut(s)	520, 944
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	5 cut(s)	31, 236, 374, 771, 884
HincII	GTYRAC	3 cut(s)	52, 270, 613
HindII	GTYRAC	3 cut(s)	52, 270, 613
HinfI	GANTC	5 cut(s)	134, 187, 755, 791, 815
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	3 cut(s)	50, 254, 638
Hpy166II	GTNNAC	5 cut(s)	52, 270, 402, 613, 973
Hpy188I	TCNGA	6 cut(s)	133, 286, 484, 689, 732, 924
Hpy188III	TCNNGA	9 cut(s)	98, 227, 321, 360, 425, 514, 530, 582, 695
Hpy8I	GTNNAC	5 cut(s)	52, 270, 402, 613, 973
HpyAV	CCTTC	3 cut(s)	31, 159, 769
HpyCH4III	ACNGT	2 cut(s)	393, 1051
HpyCH4IV	ACGT	2 cut(s)	800, 875
HpyCH4V	TGCA	7 cut(s)	46, 196, 479, 497, 672, 845, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 503, 643
HpyF3I	CTNAG	4 cut(s)	225, 358, 731, 1034
HpySE526I	ACGT	2 cut(s)	800, 875
Hsp92II	CATG	5 cut(s)	31, 236, 374, 771, 884
Kpn2I	TCCGGA	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	584, 628, 658, 727
Lsp1109I	GCAGC	1 cut(s)	959
LweI	GCATC	2 cut(s)	488, 1025
MaeI	CTAG	3 cut(s)	15, 695, 759
MaeII	ACGT	2 cut(s)	800, 875
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	4 cut(s)	586, 630, 660, 729
MboI	GATC	4 cut(s)	584, 628, 658, 727
MboII	GAAGA	6 cut(s)	356, 570, 755, 758, 761, 911
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	3 cut(s)	584, 658, 727
MlyI	GAGTC	2 cut(s)	143, 749
MmeI	TCCRAC	1 cut(s)	789
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	8 cut(s)	51, 90, 275, 330, 432, 540, 723, 837
MspA1I	CMGCKG	1 cut(s)	950
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	909, 1081
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	2 cut(s)	909, 1081
MwoI	GCNNNNNNNGC	3 cut(s)	68, 503, 643
NcoI	CCATGG	1 cut(s)	767
NdeII	GATC	4 cut(s)	584, 628, 658, 727
NlaIII	CATG	5 cut(s)	31, 236, 374, 771, 884
NmuCI	GTSAC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	187, 791, 815
PfoI	TCCNGGA	1 cut(s)	907
PkrI	GCNGC	2 cut(s)	946, 949
PleI	GAGTC	2 cut(s)	142, 749
PpsI	GAGTC	2 cut(s)	142, 749
PpuMI	RGGWCCY	1 cut(s)	905
PshAI	GACNNNNGTC	1 cut(s)	759
PshBI	ATTAAT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	905
Psp6I	CCWGG	2 cut(s)	907, 1079
PspGI	CCWGG	2 cut(s)	907, 1079
PspPI	GGNCC	2 cut(s)	905, 924
PspPPI	RGGWCCY	1 cut(s)	905
PsuI	RGATCY	3 cut(s)	584, 658, 727
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	2 cut(s)	824, 1041
RsaNI	GTAC	2 cut(s)	823, 1040
SaqAI	TTAA	8 cut(s)	51, 90, 275, 330, 432, 540, 723, 837
SatI	GCNGC	2 cut(s)	945, 948
Sau3AI	GATC	4 cut(s)	584, 628, 658, 727
Sau96I	GGNCC	2 cut(s)	905, 924
SchI	GAGTC	2 cut(s)	143, 749
ScrFI	CCNGG	2 cut(s)	909, 1081
SfaNI	GCATC	2 cut(s)	488, 1025
SinI	GGWCC	2 cut(s)	905, 924
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SpeI	ACTAGT	1 cut(s)	14
SsiI	CCGC	2 cut(s)	446, 945
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	3 cut(s)	15, 695, 759
StyD4I	CCNGG	2 cut(s)	907, 1079
StyI	CCWWGG	3 cut(s)	33, 714, 767
TaaI	ACNGT	2 cut(s)	393, 1051
TaiI	ACGT	2 cut(s)	803, 878
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	3 cut(s)	187, 791, 815
Tru1I	TTAA	8 cut(s)	51, 90, 275, 330, 432, 540, 723, 837
Tru9I	TTAA	8 cut(s)	51, 90, 275, 330, 432, 540, 723, 837
TscAI	CASTG	2 cut(s)	121, 674
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	947
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	5 cut(s)	203, 303, 306, 804, 869
TspGWI	ACGGA	3 cut(s)	69, 810, 1048
TspRI	CASTG	2 cut(s)	121, 674
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	905, 924
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	5 cut(s)	64, 93, 363, 738, 1084
XbaI	TCTAGA	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	2 cut(s)	595, 983
XmiI	GTMKAC	2 cut(s)	401, 972
XspI	CTAG	3 cut(s)	15, 695, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.