Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

32989811 .. 32992853

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0190500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAACACAGAACACAGCAACCTGCAAGGCTACAACCAACAACCAGTCTCCGCCAGTCCGCCTCTGCAGTCTCTGAGCTTCGCCTCCAGGCTCCAGTGTTTTCAATCTGCTGGGTGACTGTTGCAGTAAGGAAAAGATCGTCTCCCATCACTTGTCAGCCGTTTTCAATCTCAGCAAAGAACTCAAAGCCGCCATTGACGTGCTTCCAAGCTTTGCGTCGCGGTCCAAACGACGTTATCGTCAAGTCAAGGAGGGATTCTCCAGGCCTTATCTTCTCCAGGCCTCCACCAAGATGGCTTTGGAATCCTATACATTTGGACCGTTCAAAATCGGCAGCAGGGAAGTGTTTCACAGCTCTAATCTATCGTATGCCTTGGATAATCTGTGCCATGTTGTTCCTGATGAACAAAATACGGCAGGAGCTGCAGTCATATTTGTCAAATGGACCAATTACAATTGTGACTGGGAGTCAAACAGGTGCTAGCAGATATGGTATAATTATTGTTGCAGTAGTGGCAGGATATGGCTACTTTTGGTGGAAGGGGTGGAAACTTCCTGATATGATGTTTGCAACAAGACGTAGCTTAGCTGATGCTGGCAAGTCTTTTTCTAAACAGATTGACGGTGTCTTTTCATCGATTTCAATCACCAGGCGACAATTATCTTCAAACTTGGATGGTGTGGACTGTAATTTAGCTGAGAGTATTGAAACTACTGTTAGGACACAACAGGAGGTTATTGAACTACAAGGAAAAACAGATTCCATCAGCACGGATTTTAGAAAAGTTCAACATGCAGTGCTGACTCTGGAAACTAAGATTAACATAATAGAAGGCAAGCAGGATTCAACTAATGACGGAGTGTGGAGGTTGTGTGACTATGCCAAGAGATTGGAAAATAGCAGAACCACAGAACGTATTCAGGCATGTATTGAACTCTTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

315

Amino Acids

35.52

Weight (kDa)

9.83

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1664	PF07889	162 - 281	1.7e-38	Protein of unknown function (DUF1664)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	31
AccII	CGCG	1 cut(s)	222
AciI	CCGC	4 cut(s)	52, 60, 191, 222
AhdI	GACNNNNNGTC	1 cut(s)	468
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	4 cut(s)	87, 262, 278, 650
AluBI	AGCT	7 cut(s)	79, 212, 356, 424, 585, 590, 698
AluI	AGCT	7 cut(s)	79, 212, 356, 424, 585, 590, 698
Alw26I	GTCTC	3 cut(s)	53, 76, 147
AlwNI	CAGNNNCTG	2 cut(s)	74, 424
AoxI	GGCC	2 cut(s)	265, 281
ApeKI	GCWGC	2 cut(s)	335, 424
Asp700I	GAANNNNTTC	2 cut(s)	347, 918
AspS9I	GGNCC	3 cut(s)	224, 319, 446
AsuHPI	GGTGA	2 cut(s)	127, 640
AsuNHI	GCTAGC	1 cut(s)	482
AvaII	GGWCC	3 cut(s)	224, 319, 446
BbvI	GCAGC	2 cut(s)	347, 411
BccI	CCATC	4 cut(s)	155, 288, 671, 773
BceAI	ACGGC	2 cut(s)	145, 431
BciT130I	CCWGG	4 cut(s)	89, 264, 280, 652
BcoDI	GTCTC	3 cut(s)	53, 76, 147
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	2 cut(s)	66, 425
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	191, 336, 425
BlpI	GCTNAGC	1 cut(s)	586
BlsI	GCNGC	3 cut(s)	192, 337, 426
Bme1390I	CCNGG	4 cut(s)	89, 264, 280, 652
Bme18I	GGWCC	3 cut(s)	224, 319, 446
BmeRI	GACNNNNNGTC	1 cut(s)	468
BmgBI	CACGTC	1 cut(s)	201
BmgT120I	GGNCC	3 cut(s)	224, 319, 446
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	4 cut(s)	89, 264, 280, 652
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	583
BmtI	GCTAGC	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	4 cut(s)	71, 78, 246, 262
Bpu1102I	GCTNAGC	1 cut(s)	586
Bsa29I	ATCGAT	1 cut(s)	638
BsaBI	GATNNNNATC	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	374
BsaXI	ACNNNNNCTCC	4 cut(s)	413, 443, 859, 889
Bse1I	ACTGG	4 cut(s)	45, 55, 95, 469
Bse8I	GATNNNNATC	1 cut(s)	644
BseBI	CCWGG	4 cut(s)	89, 264, 280, 652
BseCI	ATCGAT	1 cut(s)	638
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	682
BseJI	GATNNNNATC	1 cut(s)	644
BseMII	CTCAG	3 cut(s)	66, 186, 690
BseNI	ACTGG	4 cut(s)	45, 55, 95, 469
BseXI	GCAGC	2 cut(s)	347, 411
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	267, 283
BshVI	ATCGAT	1 cut(s)	638
BsmAI	GTCTC	3 cut(s)	53, 76, 147
BsmBI	CGTCTC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	267, 283
Bsp143I	GATC	1 cut(s)	137
Bsp1720I	GCTNAGC	1 cut(s)	586
BspACI	CCGC	4 cut(s)	52, 60, 191, 222
BspANI	GGCC	2 cut(s)	267, 283
BspCNI	CTCAG	3 cut(s)	67, 185, 691
BspDI	ATCGAT	1 cut(s)	638
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	2 cut(s)	70, 429
BspMI	ACCTGC	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	486
BsrI	ACTGG	4 cut(s)	45, 55, 95, 469
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	374
Bst2UI	CCWGG	4 cut(s)	89, 264, 280, 652
Bst4CI	ACNGT	5 cut(s)	121, 323, 626, 689, 718
Bst6I	CTCTTC	1 cut(s)	944
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	484, 598, 839
BstDEI	CTNAG	5 cut(s)	75, 172, 586, 699, 816
BstF5I	GGATG	1 cut(s)	682
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	3 cut(s)	53, 76, 147
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 515
BstNI	CCWGG	4 cut(s)	89, 264, 280, 652
BstNSI	RCATGY	2 cut(s)	797, 930
BstSCI	CCNGG	4 cut(s)	87, 262, 278, 650
BstSFI	CTRYAG	2 cut(s)	66, 425
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	347, 411
BstXI	CCANNNNNNTGG	2 cut(s)	294, 892
Bsu15I	ATCGAT	1 cut(s)	638
BsuRI	GGCC	2 cut(s)	267, 283
BsuTUI	ATCGAT	1 cut(s)	638
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	682
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	2 cut(s)	102, 804
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	484, 598, 839
CaiI	CAGNNNCTG	2 cut(s)	74, 424
Cfr13I	GGNCC	3 cut(s)	224, 319, 446
ClaI	ATCGAT	1 cut(s)	638
CseI	GACGC	1 cut(s)	206
CviAII	CATG	3 cut(s)	391, 794, 927
DdeI	CTNAG	5 cut(s)	75, 172, 586, 699, 816
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DrdI	GACNNNNNNGTC	1 cut(s)	239
DriI	GACNNNNNGTC	1 cut(s)	468
DseDI	GACNNNNNNGTC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	944
Eam1105I	GACNNNNNGTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	944
EciI	GGCGGA	2 cut(s)	41, 49
Eco130I	CCWWGG	1 cut(s)	374
Eco147I	AGGCCT	2 cut(s)	267, 283
Eco47I	GGWCC	3 cut(s)	224, 319, 446
EcoRII	CCWGG	4 cut(s)	87, 262, 278, 650
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	3 cut(s)	394, 797, 930
FatI	CATG	3 cut(s)	390, 793, 926
Fnu4HI	GCNGC	3 cut(s)	191, 336, 425
FokI	GGATG	1 cut(s)	689
Fsp4HI	GCNGC	3 cut(s)	191, 336, 425
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	3 cut(s)	191, 336, 425
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	4 cut(s)	71, 78, 246, 262
HaeIII	GGCC	2 cut(s)	267, 283
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	394, 797, 930
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	6 cut(s)	257, 304, 469, 761, 805, 845
HphI	GGTGA	2 cut(s)	127, 640
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	400, 557, 809
Hpy8I	GTNNAC	1 cut(s)	685
Hpy99I	CGWCG	2 cut(s)	222, 236
HpyAV	CCTTC	2 cut(s)	535, 827
HpyCH4III	ACNGT	5 cut(s)	121, 323, 626, 689, 718
HpyCH4IV	ACGT	4 cut(s)	200, 234, 580, 916
HpyCH4V	TGCA	7 cut(s)	26, 68, 125, 427, 509, 572, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 515
HpyF3I	CTNAG	5 cut(s)	75, 172, 586, 699, 816
HpySE526I	ACGT	4 cut(s)	200, 234, 580, 916
Hsp92II	CATG	3 cut(s)	394, 797, 930
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	97, 421
Lsp1109I	GCAGC	2 cut(s)	347, 411
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	4 cut(s)	200, 234, 580, 916
MaeIII	GTNAC	3 cut(s)	115, 460, 875
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	3 cut(s)	265, 657, 931
MfeI	CAATTG	1 cut(s)	456
MluCI	AATT	5 cut(s)	450, 456, 498, 659, 691
MlyI	GAGTC	2 cut(s)	478, 799
MnlI	CCTC	6 cut(s)	73, 95, 246, 294, 727, 861
MroXI	GAANNNNTTC	2 cut(s)	347, 918
MseI	TTAA	1 cut(s)	822
MslI	CAYNNNNRTG	2 cut(s)	199, 292
MspR9I	CCNGG	4 cut(s)	89, 264, 280, 652
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	4 cut(s)	89, 264, 280, 652
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	424, 515
NdeII	GATC	1 cut(s)	137
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	3 cut(s)	394, 797, 930
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	3 cut(s)	115, 460, 875
NspI	RCATGY	2 cut(s)	797, 930
PceI	AGGCCT	2 cut(s)	267, 283
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	347, 918
PfeI	GAWTC	4 cut(s)	257, 304, 761, 845
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	3 cut(s)	192, 337, 426
PleI	GAGTC	2 cut(s)	477, 799
PpsI	GAGTC	2 cut(s)	477, 799
Psp6I	CCWGG	4 cut(s)	87, 262, 278, 650
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	4 cut(s)	87, 262, 278, 650
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	3 cut(s)	224, 319, 446
PstI	CTGCAG	2 cut(s)	70, 429
PstNI	CAGNNNCTG	2 cut(s)	74, 424
PsyI	GACNNNGTC	1 cut(s)	626
RseI	CAYNNNNRTG	2 cut(s)	199, 292
SaqAI	TTAA	1 cut(s)	822
SatI	GCNGC	3 cut(s)	191, 336, 425
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	3 cut(s)	224, 319, 446
SchI	GAGTC	2 cut(s)	478, 799
ScrFI	CCNGG	4 cut(s)	89, 264, 280, 652
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	2 cut(s)	66, 425
SinI	GGWCC	3 cut(s)	224, 319, 446
SmiMI	CAYNNNNRTG	2 cut(s)	199, 292
Sse9I	AATT	5 cut(s)	450, 456, 498, 659, 691
SseBI	AGGCCT	2 cut(s)	267, 283
SsiI	CCGC	4 cut(s)	52, 60, 191, 222
SspMI	CTAG	1 cut(s)	483
StuI	AGGCCT	2 cut(s)	267, 283
StyD4I	CCNGG	4 cut(s)	87, 262, 278, 650
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	5 cut(s)	121, 323, 626, 689, 718
TaiI	ACGT	4 cut(s)	203, 237, 583, 919
TaqI	TCGA	1 cut(s)	638
TasI	AATT	5 cut(s)	450, 456, 498, 659, 691
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	4 cut(s)	257, 304, 761, 845
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TscAI	CASTG	2 cut(s)	102, 804
TseFI	GTSAC	3 cut(s)	115, 460, 875
TseI	GCWGC	2 cut(s)	335, 424
Tsp45I	GTSAC	3 cut(s)	115, 460, 875
TspDTI	ATGAA	2 cut(s)	419, 624
TspGWI	ACGGA	2 cut(s)	788, 873
TspRI	CASTG	2 cut(s)	102, 804
Tth111I	GACNNNGTC	1 cut(s)	626
VpaK11BI	GGWCC	3 cut(s)	224, 319, 446
XceI	RCATGY	2 cut(s)	797, 930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297
XmnI	GAANNNNTTC	2 cut(s)	347, 918
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.