Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

15617000 .. 15618127

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0114300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGAAGCCATATGAGCAAGAACACTACCACTGAGACATCGTCGTCTGCTATAAATCTGACCACTTTTCAGTACACAACTGATCAATTGAGCTCATATGAGGCTGCTTGCAAGGTTGATGCTGACTTGCAGTCGTTTGATACCAACCTCCAAAACCGAACCAATCAAGTTATCACCATTCTTGCAGCAGGAGTTGAAGTTCGAGCTCTGTCGTTCGATTCCTTGAAAGAAGTGACAGAATGTTTATTGGAGATGAACCAGGAGGTTGTCAAGGTAATATTGGAATGCAAGAAAGACATTTGGAAGAATCAGGAATTGTTCGAGCTGGTCGAGGAGTACTTTGAGAATAGCTTGCAGACTCTAGACTTTTGTACTGCATTGGAGAAGTGCCTGAAGCGAGCTCATGATAGTCAACTGCTCATTCTTGTTGCCCTTCAACAATTCGAGGAGGAAATTGAGGTGGGAGGCAGTCAGTACATAAGGACAATGGAAGAGTTGAAGAATTTTAAGACTGCTGGTGACCCTTTTACTGAAGAGTTCTTCCAAATGTTTCAAACTGTTTCCAGGCAGCAAATACAGATGCTTGAGAAGTTGCATCTTCGAAAGAACAAGCTGGATAAGAAGCTCAAGTACATCAATGCTTGGAGGAAGGTCTCGAGTATCATATTTGTTGCTACTTTTGCTGCAGTCTTGATTTGTTCGGTTGTGGCAGCAGCCATGGCTGCTCCGCCTGTCGCAGCAGATCTAGCTGCTGCGACTTCTGTCCCCATTGGTTCAATGGGAAAATGGATTGACTTTTTGTGGAAGAATTATCAAAGTGCTATGAAGGGTCAGAAGGAAGACTTGGACAACATTCGAGTTCTGGTGGACCGATTGGAAATTGAAATTCAGTCGCTCATGGATAATGCAAGCTTTGCTATTGAGCAAGAAGCAGTTAGGATTGCAATAGAGGAGATTAAGAAGAAGTTGGGAGTATTTATGAAGAATGTTGAGGAATTGGGATCTCAAGCTGATATGTGCAGCCGAGACATTCGAAGAGCAAGGACTGTGGTTCTGCAGAGGATTATCAAGCATACTAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

361

Amino Acids

41.01

Weight (kDa)

5.32

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	26 - 164	2.4e-07	Protein ROH1-like
DUF677	PF05055	43 - 355	4.1e-120	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	1 cut(s)	1009
AcsI	RAATTY	2 cut(s)	502, 885
AcuI	CTGAAG	2 cut(s)	413, 552
AfaI	GTAC	5 cut(s)	74, 338, 373, 476, 632
AgsI	TTSAA	7 cut(s)	197, 226, 437, 499, 554, 777, 884
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	258, 563
AjuI	GAANNNNNNNTTGG	2 cut(s)	827, 859
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
Alw21I	GWGCWC	3 cut(s)	95, 208, 403
Alw26I	GTCTC	3 cut(s)	29, 658, 1020
AlwI	GGATC	1 cut(s)	1009
Ama87I	CYCGRG	1 cut(s)	655
ApoI	RAATTY	2 cut(s)	502, 885
AspS9I	GGNCC	1 cut(s)	868
AsuHPI	GGTGA	2 cut(s)	166, 530
AsuII	TTCGAA	2 cut(s)	601, 1033
AvaI	CYCGRG	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	868
BanII	GRGCYC	3 cut(s)	95, 208, 403
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	3 cut(s)	95, 208, 403
BciT130I	CCWGG	2 cut(s)	260, 565
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	3 cut(s)	29, 658, 1020
BfaI	CTAG	2 cut(s)	362, 746
BfmI	CTRYAG	2 cut(s)	684, 1055
BglII	AGATCT	1 cut(s)	742
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	2 cut(s)	260, 565
Bme18I	GGWCC	1 cut(s)	868
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	868
BmrFI	CCNGG	2 cut(s)	260, 565
BmsI	GCATC	3 cut(s)	109, 570, 604
BoxI	GACNNNNGTC	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	846
Bpu14I	TTCGAA	2 cut(s)	601, 1033
BpuEI	CTTGAG	3 cut(s)	605, 611, 990
BsaI	GGTCTC	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
BseBI	CCWGG	2 cut(s)	260, 565
BseDI	CCNNGG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	3 cut(s)	347, 461, 965
BsgI	GTGCAG	1 cut(s)	1039
BsiHKAI	GWGCWC	3 cut(s)	95, 208, 403
BsiHKCI	CYCGRG	1 cut(s)	655
BslFI	GGGAC	1 cut(s)	749
BsmAI	GTCTC	3 cut(s)	29, 658, 1020
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	658
BsoBI	CYCGRG	1 cut(s)	655
Bsp119I	TTCGAA	2 cut(s)	601, 1033
Bsp1286I	GDGCHC	3 cut(s)	95, 208, 403
Bsp143I	GATC	3 cut(s)	82, 742, 1001
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	1 cut(s)	728
BspCNI	CTCAG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	403
BspMAI	CTGCAG	2 cut(s)	688, 1059
BspPI	GGATC	1 cut(s)	1009
BspQI	GCTCTTC	1 cut(s)	1030
BspT104I	TTCGAA	2 cut(s)	601, 1033
BspTNI	GGTCTC	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	3 cut(s)	82, 742, 1001
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	260, 565
Bst4CI	ACNGT	2 cut(s)	559, 1048
Bst6I	CTCTTC	3 cut(s)	486, 528, 1030
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstBI	TTCGAA	2 cut(s)	601, 1033
BstC8I	GCNNGC	4 cut(s)	109, 353, 399, 910
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	717
BstEII	GGTNACC	1 cut(s)	518
BstKTI	GATC	3 cut(s)	85, 745, 1004
BstMAI	GTCTC	3 cut(s)	29, 658, 1020
BstMBI	GATC	3 cut(s)	82, 742, 1001
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 680, 719, 722, 746, 914
BstNI	CCWGG	2 cut(s)	260, 565
BstPAI	GACNNNNGTC	1 cut(s)	761
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	258, 563
BstSFI	CTRYAG	2 cut(s)	684, 1055
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	742, 1001
BstYI	RGATCY	2 cut(s)	742, 1001
BtgI	CCRYGG	1 cut(s)	717
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	4 cut(s)	109, 353, 399, 910
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	868
Csp6I	GTAC	5 cut(s)	73, 337, 372, 475, 631
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviAII	CATG	3 cut(s)	404, 718, 898
CviQI	GTAC	5 cut(s)	73, 337, 372, 475, 631
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	3 cut(s)	84, 744, 1003
DpnII	GATC	3 cut(s)	82, 742, 1001
DrdI	GACNNNNNNGTC	1 cut(s)	43
DriI	GACNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	486, 528, 1030
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	3 cut(s)	486, 528, 1030
EciI	GGCGGA	1 cut(s)	717
Ecl136II	GAGCTC	3 cut(s)	93, 206, 401
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	3 cut(s)	95, 208, 403
Eco31I	GGTCTC	1 cut(s)	658
Eco47I	GGWCC	1 cut(s)	868
Eco53kI	GAGCTC	3 cut(s)	93, 206, 401
Eco57I	CTGAAG	2 cut(s)	413, 552
Eco88I	CYCGRG	1 cut(s)	655
Eco91I	GGTNACC	1 cut(s)	518
EcoICRI	GAGCTC	3 cut(s)	93, 206, 401
EcoO65I	GGTNACC	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	258, 563
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	3 cut(s)	95, 208, 403
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	3 cut(s)	407, 721, 901
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	3 cut(s)	403, 717, 897
FauNDI	CATATG	2 cut(s)	12, 97
FbaI	TGATCA	1 cut(s)	82
FriOI	GRGCYC	3 cut(s)	95, 208, 403
FspBI	CTAG	2 cut(s)	362, 746
Hin1II	CATG	3 cut(s)	407, 721, 901
HincII	GTYRAC	1 cut(s)	413
HindII	GTYRAC	1 cut(s)	413
HindIII	AAGCTT	1 cut(s)	910
HinfI	GANTC	3 cut(s)	218, 307, 358
HphI	GGTGA	2 cut(s)	166, 530
Hpy166II	GTNNAC	3 cut(s)	75, 413, 868
Hpy188I	TCNGA	2 cut(s)	60, 834
Hpy188III	TCNNGA	5 cut(s)	311, 362, 404, 655, 691
Hpy8I	GTNNAC	3 cut(s)	75, 413, 868
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	4 cut(s)	443, 643, 820, 829
HpyCH4III	ACNGT	2 cut(s)	559, 1048
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 680, 719, 722, 746, 914
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	407, 721, 901
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	82, 742, 1001
LguI	GCTCTTC	1 cut(s)	1030
LmnI	GCTCC	1 cut(s)	730
LweI	GCATC	3 cut(s)	109, 570, 604
MaeI	CTAG	2 cut(s)	362, 746
MaeIII	GTNAC	2 cut(s)	232, 518
MalI	GATC	3 cut(s)	84, 744, 1003
MboI	GATC	3 cut(s)	82, 742, 1001
MfeI	CAATTG	1 cut(s)	86
MflI	RGATCY	2 cut(s)	742, 1001
MhlI	GDGCHC	3 cut(s)	95, 208, 403
MluCI	AATT	9 cut(s)	86, 314, 440, 453, 502, 808, 879, 885, 995
MlyI	GAGTC	1 cut(s)	352
MseI	TTAA	2 cut(s)	507, 957
MspR9I	CCNGG	2 cut(s)	260, 565
MunI	CAATTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	260, 565
MwoI	GCNNNNNNNGC	6 cut(s)	15, 680, 719, 722, 746, 914
NcoI	CCATGG	1 cut(s)	717
NdeI	CATATG	2 cut(s)	12, 97
NdeII	GATC	3 cut(s)	82, 742, 1001
NlaIII	CATG	3 cut(s)	407, 721, 901
NmeAIII	GCCGAG	1 cut(s)	1049
NmuCI	GTSAC	2 cut(s)	232, 518
NspV	TTCGAA	2 cut(s)	601, 1033
PaeR7I	CTCGAG	1 cut(s)	655
PagI	TCATGA	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	1030
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	218, 307
PflFI	GACNNNGTC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	761
Psp124BI	GAGCTC	3 cut(s)	95, 208, 403
Psp6I	CCWGG	2 cut(s)	258, 563
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	2 cut(s)	258, 563
PspPI	GGNCC	1 cut(s)	868
PstI	CTGCAG	2 cut(s)	688, 1059
PsuI	RGATCY	2 cut(s)	742, 1001
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	5 cut(s)	74, 338, 373, 476, 632
RsaNI	GTAC	5 cut(s)	73, 337, 372, 475, 631
SacI	GAGCTC	3 cut(s)	95, 208, 403
SapI	GCTCTTC	1 cut(s)	1030
SaqAI	TTAA	2 cut(s)	507, 957
Sau3AI	GATC	3 cut(s)	82, 742, 1001
Sau96I	GGNCC	1 cut(s)	868
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	260, 565
SduI	GDGCHC	3 cut(s)	95, 208, 403
SfaNI	GCATC	3 cut(s)	109, 570, 604
SfcI	CTRYAG	2 cut(s)	684, 1055
Sfr274I	CTCGAG	1 cut(s)	655
SfuI	TTCGAA	2 cut(s)	601, 1033
SinI	GGWCC	1 cut(s)	868
SlaI	CTCGAG	1 cut(s)	655
SmlI	CTYRAG	4 cut(s)	584, 626, 655, 1005
SmoI	CTYRAG	4 cut(s)	584, 626, 655, 1005
Sse9I	AATT	9 cut(s)	86, 314, 440, 453, 502, 808, 879, 885, 995
SsiI	CCGC	1 cut(s)	728
SspI	AATATT	1 cut(s)	279
SspMI	CTAG	2 cut(s)	362, 746
SstI	GAGCTC	3 cut(s)	95, 208, 403
StyD4I	CCNGG	2 cut(s)	258, 563
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	2 cut(s)	559, 1048
TaqI	TCGA	9 cut(s)	202, 216, 321, 330, 444, 601, 656, 856, 1033
TaqII	GACCGA	1 cut(s)	885
TasI	AATT	9 cut(s)	86, 314, 440, 453, 502, 808, 879, 885, 995
TatI	WGTACW	5 cut(s)	72, 336, 371, 474, 630
TfiI	GAWTC	2 cut(s)	218, 307
Tru1I	TTAA	2 cut(s)	507, 957
Tru9I	TTAA	2 cut(s)	507, 957
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	232, 518
Tsp45I	GTSAC	2 cut(s)	232, 518
TspDTI	ATGAA	3 cut(s)	269, 839, 995
TspRI	CASTG	1 cut(s)	37
Tth111I	GACNNNGTC	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	868
XapI	RAATTY	2 cut(s)	502, 885
XbaI	TCTAGA	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XhoI	CTCGAG	1 cut(s)	655
XspI	CTAG	2 cut(s)	362, 746
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.