Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

24806815 .. 24807623

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0168500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

211

Amino Acids

23.11

Weight (kDa)

5.36

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	7.1e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	1 cut(s)	570
AclI	AACGTT	1 cut(s)	591
AclWI	GGATC	4 cut(s)	141, 327, 340, 375
AcuI	CTGAAG	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	1 cut(s)	91
AfeI	AGCGCT	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	467
AhlI	ACTAGT	2 cut(s)	314, 359
AjnI	CCWGG	2 cut(s)	92, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	53, 199, 604, 626
AluI	AGCT	4 cut(s)	53, 199, 604, 626
Alw21I	GWGCWC	2 cut(s)	492, 606
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	4 cut(s)	141, 327, 340, 375
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	620
Aor51HI	AGCGCT	1 cut(s)	541
ApaLI	GTGCAC	1 cut(s)	488
ApeKI	GCWGC	3 cut(s)	50, 293, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	354
BaeGI	GKGCMC	3 cut(s)	164, 306, 492
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	262, 606
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	2 cut(s)	492, 606
BbvI	GCAGC	3 cut(s)	62, 280, 613
BccI	CCATC	2 cut(s)	368, 625
BceAI	ACGGC	2 cut(s)	72, 508
BciT130I	CCWGG	2 cut(s)	94, 458
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 359
BfaI	CTAG	3 cut(s)	315, 360, 634
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	543
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 627
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	3 cut(s)	52, 295, 628
Bme1390I	CCNGG	2 cut(s)	94, 458
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
BmrFI	CCNGG	2 cut(s)	94, 458
BpmI	CTGGAG	4 cut(s)	93, 179, 282, 438
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	113, 620
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	3 cut(s)	205, 299, 421
BseAI	TCCGGA	1 cut(s)	620
BseBI	CCWGG	2 cut(s)	94, 458
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	428, 617
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	2 cut(s)	579, 619
BseNI	ACTGG	3 cut(s)	205, 299, 421
BseRI	GAGGAG	3 cut(s)	44, 459, 462
BseSI	GKGCMC	3 cut(s)	164, 306, 492
BseXI	GCAGC	3 cut(s)	62, 280, 613
BsiHKAI	GWGCWC	2 cut(s)	492, 606
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	5 cut(s)	164, 262, 306, 492, 606
Bsp13I	TCCGGA	1 cut(s)	620
Bsp143I	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
Bsp1720I	GCTNAGC	1 cut(s)	605
BspACI	CCGC	1 cut(s)	570
BspCNI	CTCAG	2 cut(s)	578, 618
BspEI	TCCGGA	1 cut(s)	620
BspLI	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
BspPI	GGATC	4 cut(s)	141, 327, 340, 375
BsrI	ACTGG	3 cut(s)	205, 299, 421
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 458
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	501
BstDEI	CTNAG	2 cut(s)	565, 605
BstEII	GGTNACC	2 cut(s)	509, 572
BstF5I	GGATG	2 cut(s)	428, 617
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	6 cut(s)	136, 189, 335, 383, 391, 454
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
BstNI	CCWGG	2 cut(s)	94, 458
BstNSI	RCATGY	1 cut(s)	218
BstPI	GGTNACC	2 cut(s)	509, 572
BstSCI	CCNGG	2 cut(s)	92, 456
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	3 cut(s)	164, 306, 492
BstV1I	GCAGC	3 cut(s)	62, 280, 613
BstX2I	RGATCY	4 cut(s)	133, 186, 332, 380
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	4 cut(s)	133, 186, 332, 380
BtsCI	GGATG	2 cut(s)	428, 617
BtsIMutI	CAGTG	2 cut(s)	306, 586
CfoI	GCGC	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	354
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	3 cut(s)	70, 215, 307
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	565, 605
DpnI	GATC	6 cut(s)	135, 188, 334, 382, 390, 453
DpnII	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	604
Eco24I	GRGCYC	2 cut(s)	262, 606
Eco47I	GGWCC	1 cut(s)	354
Eco47III	AGCGCT	1 cut(s)	541
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	2 cut(s)	509, 572
EcoICRI	GAGCTC	1 cut(s)	604
EcoO65I	GGTNACC	2 cut(s)	509, 572
EcoRII	CCWGG	2 cut(s)	92, 456
EcoT38I	GRGCYC	2 cut(s)	262, 606
FaeI	CATG	3 cut(s)	73, 218, 310
FaiI	YATR	5 cut(s)	71, 144, 210, 216, 308
FatI	CATG	3 cut(s)	69, 214, 306
Fnu4HI	GCNGC	3 cut(s)	51, 294, 627
FokI	GGATG	2 cut(s)	415, 604
FriOI	GRGCYC	2 cut(s)	262, 606
Fsp4HI	GCNGC	3 cut(s)	51, 294, 627
FspBI	CTAG	3 cut(s)	315, 360, 634
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	3 cut(s)	51, 294, 627
GsuI	CTGGAG	4 cut(s)	93, 179, 282, 438
HaeII	RGCGCY	1 cut(s)	543
HapII	CCGG	1 cut(s)	621
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	3 cut(s)	73, 218, 310
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	357, 490
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 599, 621
Hpy8I	GTNNAC	2 cut(s)	357, 490
HpyAV	CCTTC	2 cut(s)	511, 527
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	3 cut(s)	252, 501, 591
HpyCH4V	TGCA	2 cut(s)	436, 490
HpyF3I	CTNAG	2 cut(s)	565, 605
HpySE526I	ACGT	3 cut(s)	252, 501, 591
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	73, 218, 310
HspAI	GCGC	1 cut(s)	540
Kpn2I	TCCGGA	1 cut(s)	620
Kzo9I	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
LmnI	GCTCC	2 cut(s)	301, 623
Lsp1109I	GCAGC	3 cut(s)	62, 280, 613
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	3 cut(s)	315, 360, 634
MaeII	ACGT	3 cut(s)	252, 501, 591
MaeIII	GTNAC	3 cut(s)	509, 548, 572
MalI	GATC	6 cut(s)	135, 188, 334, 382, 390, 453
MboI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
MboII	GAAGA	1 cut(s)	464
MflI	RGATCY	4 cut(s)	133, 186, 332, 380
MhlI	GDGCHC	5 cut(s)	164, 262, 306, 492, 606
MluCI	AATT	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	53, 199
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	2 cut(s)	94, 458
MvaI	CCWGG	2 cut(s)	94, 458
NdeII	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
NlaIII	CATG	3 cut(s)	73, 218, 310
NlaIV	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	100, 123, 178
PkrI	GCNGC	3 cut(s)	52, 295, 628
Psp124BI	GAGCTC	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	92, 456
PspEI	GGTNACC	2 cut(s)	509, 572
PspGI	CCWGG	2 cut(s)	92, 456
PspN4I	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	4 cut(s)	133, 186, 332, 380
PvuII	CAGCTG	2 cut(s)	53, 199
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 627
Sau3AI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	94, 458
SduI	GDGCHC	5 cut(s)	164, 262, 306, 492, 606
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	128, 261, 599
SmoI	CTYRAG	3 cut(s)	128, 261, 599
SpeI	ACTAGT	2 cut(s)	314, 359
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	3 cut(s)	315, 360, 634
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	92, 456
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	3 cut(s)	255, 504, 594
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	100, 123, 178
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	306, 586
TseI	GCWGC	3 cut(s)	50, 293, 626
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	306, 586
VneI	GTGCAC	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	354
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	3 cut(s)	315, 360, 634
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.