Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

11339535 .. 11342513

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACGCGGCCTCTTCTCCTCCACAGAAAGCGGCGAAATTTTGTTGACTGCTATCATTCTGTTAACTGTAAATCCGGTGCCGCCTTTCGTTTATACCTTGATGAAATCTTTCACCCTGTTGTTGCCGTTTTGCTGTCTGTAACATTTGTTCTAATCTTCAGAGAGGTTCTTGATCTTGTACTTGGACATGGAGATGATTTGTTCAGGCGAGCACAGTCGAAAGCCCTCGTCTCTATTCACGACCCTGAGGTTGGAAAGGGAGTTGAACTAACACATGATAAGGCAATGATTATCAATGGAGTGCTAGATTTAACTGTAAAGACTGTCGAGGAGGCTATGACACCTATTGAATCAAGAATGTGCTTGGATGTTGATTCAAAGTTAGACTGGTACGTCTTTCGTTGGCCTTGTTTGGTTTTAATATATGCTGGAAGTGATCTAGTTTTCTTCCTTCCACTAATAAGGACATTTCTTGATCCTTACTTTCTGCTATATTTGCTGTTTATTGAGCAGAGGAAGCAATTGGGAAAATTCTTGCATGTGTTAGAATGTGTTGCTGAGCTTGTAGGAAAGGGTGCTTTAGCTGAAGGAGACAAGATCACCTTAGAAACTGCAAAGCTGTTGAGAGAGAATTCTCTCGCGCAGGATGCATTTACTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

220

Amino Acids

25.07

Weight (kDa)

6.16

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_VA_C	PF22919	182 - 219	5.3e-06	C-terminal domain of V and A type ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	2 cut(s)	7, 641
AciI	CCGC	3 cut(s)	7, 31, 81
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	3 cut(s)	37, 530, 631
AcuI	CTGAAG	2 cut(s)	142, 606
AfaI	GTAC	2 cut(s)	180, 392
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	266, 350, 378
AluBI	AGCT	3 cut(s)	562, 584, 619
AluI	AGCT	3 cut(s)	562, 584, 619
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	235, 585
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	2 cut(s)	8, 404
ApoI	RAATTY	3 cut(s)	37, 530, 631
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	643
AsuHPI	GGTGA	2 cut(s)	104, 592
AxyI	CCTNAGG	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	235, 585
BfaI	CTAG	2 cut(s)	305, 440
BisI	GCNGC	3 cut(s)	8, 32, 81
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	3 cut(s)	9, 33, 82
BmiI	GGNNCC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	637
Bpu1102I	GCTNAGC	1 cut(s)	558
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	392
Bse21I	CCTNAGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	373, 652
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	237, 549
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	2 cut(s)	8, 344
Bsh1236I	CGCG	2 cut(s)	7, 641
BshFI	GGCC	2 cut(s)	10, 406
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	235, 585
BsmBI	CGTCTC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	10, 406
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	4 cut(s)	172, 436, 475, 597
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	3 cut(s)	7, 31, 81
BspANI	GGCC	2 cut(s)	10, 406
BspCNI	CTCAG	2 cut(s)	238, 550
BspFNI	CGCG	2 cut(s)	7, 641
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	392
BssMI	GATC	4 cut(s)	172, 436, 475, 597
Bst4CI	ACNGT	4 cut(s)	68, 216, 316, 325
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	246, 558, 604
BstF5I	GGATG	2 cut(s)	373, 652
BstFNI	CGCG	2 cut(s)	7, 641
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	4 cut(s)	175, 439, 478, 600
BstMAI	GTCTC	2 cut(s)	235, 585
BstMBI	GATC	4 cut(s)	172, 436, 475, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	496, 517, 647
BstNSI	RCATGY	1 cut(s)	542
BstUI	CGCG	2 cut(s)	7, 641
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	10, 406
BtsCI	GGATG	2 cut(s)	373, 652
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	643
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	179, 391
CviAII	CATG	3 cut(s)	188, 275, 539
CviJI	RGCY	7 cut(s)	10, 224, 335, 406, 562, 584, 619
CviKI_1	RGCY	7 cut(s)	10, 224, 335, 406, 562, 584, 619
CviQI	GTAC	2 cut(s)	179, 391
DdeI	CTNAG	3 cut(s)	246, 558, 604
DpnI	GATC	4 cut(s)	174, 438, 477, 599
DpnII	GATC	4 cut(s)	172, 436, 475, 597
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	142, 606
Eco81I	CCTNAGG	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	631
EcoT22I	ATGCAT	1 cut(s)	652
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	3 cut(s)	191, 278, 542
FaiI	YATR	8 cut(s)	94, 189, 276, 338, 424, 426, 493, 540
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FatI	CATG	3 cut(s)	187, 274, 538
Fnu4HI	GCNGC	3 cut(s)	8, 32, 81
FokI	GGATG	2 cut(s)	380, 659
Fsp4HI	GCNGC	3 cut(s)	8, 32, 81
FspBI	CTAG	2 cut(s)	305, 440
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	3 cut(s)	8, 32, 81
HaeIII	GGCC	2 cut(s)	10, 406
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	3 cut(s)	191, 278, 542
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	2 cut(s)	46, 64
HindII	GTYRAC	2 cut(s)	46, 64
HinfI	GANTC	2 cut(s)	350, 374
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	104, 592
Hpy166II	GTNNAC	2 cut(s)	46, 64
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	4 cut(s)	170, 239, 354, 473
Hpy8I	GTNNAC	2 cut(s)	46, 64
HpyAV	CCTTC	2 cut(s)	461, 581
HpyCH4III	ACNGT	4 cut(s)	68, 216, 316, 325
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	3 cut(s)	538, 614, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	496, 517, 647
HpyF3I	CTNAG	3 cut(s)	246, 558, 604
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	191, 278, 542
HspAI	GCGC	1 cut(s)	641
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	172, 436, 475, 597
LpnPI	CCDG	7 cut(s)	88, 129, 190, 258, 373, 414, 629
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	2 cut(s)	305, 440
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	4 cut(s)	174, 438, 477, 599
MboI	GATC	4 cut(s)	172, 436, 475, 597
MboII	GAAGA	3 cut(s)	5, 148, 439
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	4 cut(s)	37, 521, 530, 631
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	8 cut(s)	21, 29, 157, 236, 241, 322, 325, 507
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	3 cut(s)	63, 311, 419
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	521
MvnI	CGCG	2 cut(s)	7, 641
MwoI	GCNNNNNNNGC	3 cut(s)	496, 517, 647
NdeII	GATC	4 cut(s)	172, 436, 475, 597
NlaIII	CATG	3 cut(s)	191, 278, 542
NlaIV	GGNNCC	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	350, 374
PkrI	GCNGC	3 cut(s)	9, 33, 82
PspN4I	GGNNCC	1 cut(s)	79
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
RsaI	GTAC	2 cut(s)	180, 392
RsaNI	GTAC	2 cut(s)	179, 391
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	63, 311, 419
SatI	GCNGC	3 cut(s)	8, 32, 81
Sau3AI	GATC	4 cut(s)	172, 436, 475, 597
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	9 cut(s)	99, 168, 252, 346, 396, 564, 586, 605, 621
SfaNI	GCATC	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	4 cut(s)	37, 521, 530, 631
SsiI	CCGC	3 cut(s)	7, 31, 81
SspMI	CTAG	2 cut(s)	305, 440
TaaI	ACNGT	4 cut(s)	68, 216, 316, 325
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	218, 327
TasI	AATT	4 cut(s)	37, 521, 530, 631
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	3 cut(s)	10, 34, 83
TfiI	GAWTC	2 cut(s)	350, 374
Tru1I	TTAA	3 cut(s)	63, 311, 419
Tru9I	TTAA	3 cut(s)	63, 311, 419
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	648
XapI	RAATTY	3 cut(s)	37, 530, 631
XceI	RCATGY	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	305, 440
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.