Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 141 |
| AcsI | RAATTY | 1 cut(s) | 26 |
| AfaI | GTAC | 2 cut(s) | 154, 167 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 347 |
| AgsI | TTSAA | 2 cut(s) | 23, 270 |
| AjnI | CCWGG | 1 cut(s) | 340 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 82, 114 |
| AleI | CACNNNNGTG | 1 cut(s) | 357 |
| AluBI | AGCT | 2 cut(s) | 83, 127 |
| AluI | AGCT | 2 cut(s) | 83, 127 |
| Alw21I | GWGCWC | 1 cut(s) | 37 |
| Alw26I | GTCTC | 1 cut(s) | 209 |
| ApoI | RAATTY | 1 cut(s) | 26 |
| AspA2I | CCTAGG | 1 cut(s) | 274 |
| AvrII | CCTAGG | 1 cut(s) | 274 |
| BanII | GRGCYC | 1 cut(s) | 341 |
| Bbv12I | GWGCWC | 1 cut(s) | 37 |
| BccI | CCATC | 1 cut(s) | 310 |
| BciT130I | CCWGG | 1 cut(s) | 342 |
| BcoDI | GTCTC | 1 cut(s) | 209 |
| BfaI | CTAG | 2 cut(s) | 38, 275 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BlnI | CCTAGG | 1 cut(s) | 274 |
| BlpI | GCTNAGC | 1 cut(s) | 128 |
| Bme1390I | CCNGG | 1 cut(s) | 342 |
| BmrFI | CCNGG | 1 cut(s) | 342 |
| BpmI | CTGGAG | 1 cut(s) | 177 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 128 |
| BsaJI | CCNNGG | 3 cut(s) | 120, 274, 340 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 347 |
| Bse1I | ACTGG | 1 cut(s) | 160 |
| BseBI | CCWGG | 1 cut(s) | 342 |
| BseDI | CCNNGG | 3 cut(s) | 120, 274, 340 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BseMII | CTCAG | 2 cut(s) | 119, 326 |
| BseNI | ACTGG | 1 cut(s) | 160 |
| BseRI | GAGGAG | 1 cut(s) | 137 |
| BsiHKAI | GWGCWC | 1 cut(s) | 37 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BsmAI | GTCTC | 1 cut(s) | 209 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| Bsp1286I | GDGCHC | 2 cut(s) | 37, 341 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 128 |
| BspACI | CCGC | 1 cut(s) | 141 |
| BspCNI | CTCAG | 2 cut(s) | 120, 327 |
| BsrI | ACTGG | 1 cut(s) | 160 |
| BssECI | CCNNGG | 3 cut(s) | 120, 274, 340 |
| BssT1I | CCWWGG | 1 cut(s) | 274 |
| Bst2UI | CCWGG | 1 cut(s) | 342 |
| Bst4CI | ACNGT | 2 cut(s) | 165, 356 |
| BstDEI | CTNAG | 3 cut(s) | 128, 296, 335 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstMAI | GTCTC | 1 cut(s) | 209 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 80, 138 |
| BstNI | CCWGG | 1 cut(s) | 342 |
| BstSCI | CCNGG | 1 cut(s) | 340 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| Csp6I | GTAC | 2 cut(s) | 153, 166 |
| CviJI | RGCY | 6 cut(s) | 5, 83, 110, 127, 300, 339 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 83, 110, 127, 300, 339 |
| CviQI | GTAC | 2 cut(s) | 153, 166 |
| DdeI | CTNAG | 3 cut(s) | 128, 296, 335 |
| EciI | GGCGGA | 1 cut(s) | 156 |
| Eco130I | CCWWGG | 1 cut(s) | 274 |
| Eco24I | GRGCYC | 1 cut(s) | 341 |
| EcoRII | CCWGG | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 1 cut(s) | 274 |
| EcoT38I | GRGCYC | 1 cut(s) | 341 |
| ErhI | CCWWGG | 1 cut(s) | 274 |
| FaiI | YATR | 3 cut(s) | 147, 230, 260 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FokI | GGATG | 1 cut(s) | 222 |
| FriOI | GRGCYC | 1 cut(s) | 341 |
| FspBI | CTAG | 2 cut(s) | 38, 275 |
| GsuI | CTGGAG | 1 cut(s) | 177 |
| HinfI | GANTC | 4 cut(s) | 116, 184, 209, 326 |
| Hpy166II | GTNNAC | 2 cut(s) | 350, 380 |
| Hpy188I | TCNGA | 3 cut(s) | 121, 183, 214 |
| Hpy188III | TCNNGA | 1 cut(s) | 330 |
| Hpy8I | GTNNAC | 2 cut(s) | 350, 380 |
| HpyCH4III | ACNGT | 2 cut(s) | 165, 356 |
| HpyCH4IV | ACGT | 1 cut(s) | 382 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 80, 138 |
| HpyF3I | CTNAG | 3 cut(s) | 128, 296, 335 |
| HpySE526I | ACGT | 1 cut(s) | 382 |
| LmnI | GCTCC | 1 cut(s) | 124 |
| LpnPI | CCDG | 6 cut(s) | 65, 141, 230, 315, 327, 354 |
| MaeI | CTAG | 2 cut(s) | 38, 275 |
| MaeII | ACGT | 1 cut(s) | 382 |
| MboII | GAAGA | 1 cut(s) | 35 |
| MhlI | GDGCHC | 2 cut(s) | 37, 341 |
| MluCI | AATT | 3 cut(s) | 26, 104, 309 |
| MlyI | GAGTC | 4 cut(s) | 110, 193, 203, 335 |
| MnlI | CCTC | 3 cut(s) | 115, 152, 309 |
| MseI | TTAA | 3 cut(s) | 63, 321, 385 |
| MslI | CAYNNNNRTG | 1 cut(s) | 357 |
| MspR9I | CCNGG | 1 cut(s) | 342 |
| MvaI | CCWGG | 1 cut(s) | 342 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 80, 138 |
| OliI | CACNNNNGTG | 1 cut(s) | 357 |
| PleI | GAGTC | 4 cut(s) | 110, 192, 203, 334 |
| PpsI | GAGTC | 4 cut(s) | 110, 192, 203, 334 |
| Psp6I | CCWGG | 1 cut(s) | 340 |
| PspGI | CCWGG | 1 cut(s) | 340 |
| RsaI | GTAC | 2 cut(s) | 154, 167 |
| RsaNI | GTAC | 2 cut(s) | 153, 166 |
| RseI | CAYNNNNRTG | 1 cut(s) | 357 |
| SaqAI | TTAA | 3 cut(s) | 63, 321, 385 |
| SchI | GAGTC | 4 cut(s) | 110, 193, 203, 335 |
| ScrFI | CCNGG | 1 cut(s) | 342 |
| SduI | GDGCHC | 2 cut(s) | 37, 341 |
| SetI | ASST | 4 cut(s) | 85, 129, 276, 385 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 357 |
| Sse9I | AATT | 3 cut(s) | 26, 104, 309 |
| SsiI | CCGC | 1 cut(s) | 141 |
| SspMI | CTAG | 2 cut(s) | 38, 275 |
| StyD4I | CCNGG | 1 cut(s) | 340 |
| StyI | CCWWGG | 1 cut(s) | 274 |
| TaaI | ACNGT | 2 cut(s) | 165, 356 |
| TaiI | ACGT | 1 cut(s) | 385 |
| TaqI | TCGA | 1 cut(s) | 85 |
| TasI | AATT | 3 cut(s) | 26, 104, 309 |
| Tru1I | TTAA | 3 cut(s) | 63, 321, 385 |
| Tru9I | TTAA | 3 cut(s) | 63, 321, 385 |
| TspDTI | ATGAA | 1 cut(s) | 215 |
| XapI | RAATTY | 1 cut(s) | 26 |
| XmaJI | CCTAGG | 1 cut(s) | 274 |
| XspI | CTAG | 2 cut(s) | 38, 275 |