FvH4_4g23190

glutaredoxin-C1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004777
Physical Location & Seq
Forward (+)
25756567 .. 25757482
916 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23190.t1

Sequence Viewer

Length: 393 bp
ATGCAATACCAAACGGAGCATTACCAAGCAGAGTCATGGGGGTACTACATGCCGATGAGGAGCATGCACACGGCGGATCCTCTAGAGCGAGTGGCGAGGCTGGCGTCGAAGAGCGCTGTGGTTATATTCAGTTTGAGCAGCTGTTGCATGTGCCACGCCGTGAAGAGGCTCTTCTGCGGAATGGGGGTGAATCCGACGGTGTACGAGCTTGATCAAGACCCGAGAGGAAAGGAGATTGAGAGGGCTCTCATGAGGTTGCTCGGAAACTCATCGGCGGTTCCGGTGGTGTTCATCGGCGGGAAGTTGATAGGTGCCATGGACCGGGTTATGGCTTCCCATATCAATGGGTCCCTGGTGCCACTTCTCAAGGAGGCTGGGGCACTTTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

131

Amino Acids

14.41

Weight (kDa)

8.4

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 40 - 103 4.5e-16 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 311, 355
AciI CCGC 4 cut(s) 74, 177, 275, 297
AclWI GGATC 2 cut(s) 71, 84
AcyI GRCGYC 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 2 cut(s) 44, 203
AfeI AGCGCT 1 cut(s) 115
AfiI CCNNNNNNNGG 3 cut(s) 165, 321, 328
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 2 cut(s) 141, 208
AluI AGCT 2 cut(s) 141, 208
AlwI GGATC 2 cut(s) 71, 84
Ama87I CYCGRG 1 cut(s) 220
Aor51HI AGCGCT 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 319, 348
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 2 cut(s) 319, 348
BaeGI GKGCMC 1 cut(s) 382
BamHI GGATCC 1 cut(s) 76
BanI GGYRCC 2 cut(s) 311, 355
BanII GRGCYC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 150
BceAI ACGGC 2 cut(s) 87, 143
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 323
BfaI CTAG 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 323, 353
Bme18I GGWCC 2 cut(s) 319, 348
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 319, 348
BmiI GGNNCC 6 cut(s) 78, 279, 313, 349, 350, 357
BmrFI CCNGG 2 cut(s) 323, 353
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 315, 351
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 321, 328
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 315, 351
BseLI CCNNNNNNNGG 3 cut(s) 165, 321, 328
BseRI GAGGAG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 374
BshNI GGYRCC 2 cut(s) 311, 355
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 2 cut(s) 281, 322
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 3 cut(s) 165, 321, 328
BsmFI GGGAC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 247, 382
Bsp143I GATC 2 cut(s) 76, 211
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 4 cut(s) 74, 177, 275, 297
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 6 cut(s) 78, 279, 313, 349, 350, 357
BspPI GGATC 2 cut(s) 71, 84
BspQI GCTCTTC 2 cut(s) 104, 176
BspT107I GGYRCC 2 cut(s) 311, 355
BssECI CCNNGG 2 cut(s) 315, 351
BssMI GATC 2 cut(s) 76, 211
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 3 cut(s) 104, 158, 176
BstACI GRCGYC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 65, 102
BstDSI CCRYGG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 79, 214
BstMBI GATC 2 cut(s) 76, 211
BstMWI GCNNNNNNNGC 2 cut(s) 101, 144
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 3 cut(s) 52, 67, 151
BstSCI CCNGG 2 cut(s) 321, 351
BstSLI GKGCMC 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 65, 102
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 319, 348
CseI GACGC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 43, 202
CviAII CATG 6 cut(s) 36, 49, 64, 148, 250, 316
CviJI RGCY 8 cut(s) 100, 141, 169, 208, 245, 332, 374, 388
CviKI_1 RGCY 8 cut(s) 100, 141, 169, 208, 245, 332, 374, 388
CviQI GTAC 2 cut(s) 43, 202
DpnI GATC 2 cut(s) 78, 213
DpnII GATC 2 cut(s) 76, 211
DraIII CACNNNGTG 1 cut(s) 160
Eam1104I CTCTTC 3 cut(s) 104, 158, 176
EarI CTCTTC 3 cut(s) 104, 158, 176
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 247
Eco47I GGWCC 2 cut(s) 319, 348
Eco47III AGCGCT 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 6 cut(s) 39, 52, 67, 151, 253, 319
FaiI YATR 9 cut(s) 37, 50, 65, 125, 149, 251, 317, 329, 339
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 1 cut(s) 334
FatI CATG 6 cut(s) 35, 48, 63, 147, 249, 315
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 139
GsaI CCCAGC 1 cut(s) 378
HaeII RGCGCY 1 cut(s) 117
HapII CCGG 2 cut(s) 281, 322
HgaI GACGC 1 cut(s) 93
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 6 cut(s) 39, 52, 67, 151, 253, 319
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 2 cut(s) 32, 190
HpaII CCGG 2 cut(s) 281, 322
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 195, 263, 392
Hpy188III TCNNGA 3 cut(s) 83, 215, 250
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 2 cut(s) 109, 199
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 4, 67, 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 144
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 6 cut(s) 39, 52, 67, 151, 253, 319
HspAI GCGC 1 cut(s) 114
KflI GGGWCCC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 76, 211
LguI GCTCTTC 2 cut(s) 104, 176
LmnI GCTCC 2 cut(s) 16, 60
LpnPI CCDG 6 cut(s) 86, 294, 335, 338, 360, 365
Lsp1109I GCAGC 1 cut(s) 150
MaeI CTAG 1 cut(s) 83
MalI GATC 2 cut(s) 78, 213
MboI GATC 2 cut(s) 76, 211
MboII GAAGA 3 cut(s) 121, 163, 175
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 247, 382
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 8 cut(s) 51, 90, 90, 159, 218, 234, 246, 364
MslI CAYNNNNRTG 2 cut(s) 53, 342
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 2 cut(s) 281, 322
MspR9I CCNGG 2 cut(s) 323, 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 101, 144
NciI CCSGG 1 cut(s) 323
NcoI CCATGG 1 cut(s) 315
NdeII GATC 2 cut(s) 76, 211
NlaIII CATG 6 cut(s) 39, 52, 67, 151, 253, 319
NlaIV GGNNCC 6 cut(s) 78, 279, 313, 349, 350, 357
NspI RCATGY 3 cut(s) 52, 67, 151
PaeI GCATGC 1 cut(s) 67
PagI TCATGA 1 cut(s) 249
PciSI GCTCTTC 2 cut(s) 104, 176
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 6 cut(s) 78, 279, 313, 349, 350, 357
PspPI GGNCC 2 cut(s) 319, 348
PspPPI RGGWCCY 1 cut(s) 348
PsuI RGATCY 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 2 cut(s) 44, 203
RsaNI GTAC 2 cut(s) 43, 202
RseI CAYNNNNRTG 2 cut(s) 53, 342
SapI GCTCTTC 2 cut(s) 104, 176
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 2 cut(s) 76, 211
Sau96I GGNCC 2 cut(s) 319, 348
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 323, 353
SduI GDGCHC 2 cut(s) 247, 382
SetI ASST 4 cut(s) 143, 210, 257, 313
SinI GGWCC 2 cut(s) 319, 348
SmiMI CAYNNNNRTG 2 cut(s) 53, 342
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SphI GCATGC 1 cut(s) 67
SsiI CCGC 4 cut(s) 74, 177, 275, 297
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 321, 351
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 107
TfiI GAWTC 1 cut(s) 190
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 280
TspGWI ACGGA 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 319, 348
XbaI TCTAGA 1 cut(s) 82
XceI RCATGY 3 cut(s) 52, 67, 151
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.