Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011610.1

Orthogroup ID

OG0004777

Physical Location & Seq

Genomic Coordinates Forward (+)

22136 .. 22510

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011610.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgcattaccaaactgagtcatggggttcttacatggccacgagcagttacggtgattcactggagcgcatagagaggatggcgtcggagaacgcggtggtgatattcagcatcagcagctgttgcatgtgtcacgccatcaagaggctcttctgcggcatgggggtcaatccaacggtgtacgagctcgacgaggatcccagaggaggcaaggacttggagaaggctctgatgaggatcttggggacctccaacgctgtgccggtggtctttatcggtgggaagctcgtcggaaccatggacagagtcatggcctcgcacattaatggctcgctcgtccctcttctcaaagaggctggggctctctggctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

124

Amino Acids

13.53

Weight (kDa)

5.87

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02000
fragaria_vesca	FvH4_4g23190 FvH4_6g53900
malus_domestica	MD06G1051500.v1.1 MD09G1007400.v1.1 MD13G1124000.v1.1 MD16G1124500.v1.1 MD17G1011300.v1.1
prunus_persica	Prupe.1G221000_v2.0.a1 Prupe.3G309600_v2.0.a1
pyrus_communis	pycom111g00570 pycom16g10640 pycom17g00600
rosa_chinensis	RchiOBHm_Chr2g0176061 RchiOBHm_Chr4g0429551
rosa_laevigata	RLG00000007062 RLG00000022377
rosa_multiflora	Rmu_sc0011610.1_g000004 Rmu_sc0012513.1_g000002 Rmu_sc0013305.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076800 Rroxscaffold_5G00371250
rosa_rugosa	Rorug02G0590100 Rorug04G0237000
rosa_samantha	Rh2AG668900 Rh2BG680500 Rh2CG643400 Rh2DG694200 Rh4DG295400
rosa_wichuraiana	Rw2G054860 Rw4G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	95, 156
AclWI	GGATC	3 cut(s)	191, 204, 245
AcoI	YGGCCR	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	144, 206
AluBI	AGCT	3 cut(s)	120, 187, 286
AluI	AGCT	3 cut(s)	120, 187, 286
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	3 cut(s)	191, 204, 245
AlwNI	CAGNNNCTG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	36, 312
ApeKI	GCWGC	1 cut(s)	117
AseI	ATTAAT	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	65, 112
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	189, 364
BauI	CACGAG	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	2 cut(s)	73, 146
BisI	GCNGC	2 cut(s)	118, 157
BlsI	GCNGC	2 cut(s)	119, 158
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	3 cut(s)	198, 247, 295
BmsI	GCATC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 206
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	84
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	2 cut(s)	144, 206
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	356
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	38, 314
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	259, 323
BslI	CCNNNNNNNGG	2 cut(s)	144, 206
BsmFI	GGGAC	2 cut(s)	259, 323
BsnI	GGCC	2 cut(s)	38, 314
Bsp1286I	GDGCHC	2 cut(s)	189, 364
Bsp143I	GATC	2 cut(s)	196, 237
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	2 cut(s)	95, 156
BspANI	GGCC	2 cut(s)	38, 314
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	198, 247, 295
BspPI	GGATC	3 cut(s)	191, 204, 245
BspQI	GCTCTTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	196, 237
BssNI	GRCGYC	1 cut(s)	83
BssSI	CACGAG	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	53, 178
Bst6I	CTCTTC	2 cut(s)	155, 348
BstACI	GRCGYC	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	199, 240
BstMBI	GATC	2 cut(s)	196, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 123
BstNSI	RCATGY	1 cut(s)	130
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	196, 237
BstYI	RGATCY	2 cut(s)	196, 237
BsuRI	GGCC	2 cut(s)	38, 314
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	332
CaiI	CAGNNNCTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	246
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	6 cut(s)	21, 34, 127, 160, 298, 310
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	198, 239
DpnII	GATC	2 cut(s)	196, 237
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	155, 348
EarI	CTCTTC	2 cut(s)	155, 348
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	189, 364
Eco47I	GGWCC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	189, 364
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	6 cut(s)	24, 37, 130, 163, 301, 313
FaiI	YATR	7 cut(s)	22, 35, 71, 128, 161, 299, 311
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	259, 323
FatI	CATG	6 cut(s)	20, 33, 126, 159, 297, 309
Fnu4HI	GCNGC	2 cut(s)	118, 157
FokI	GGATG	1 cut(s)	91
FriOI	GRGCYC	2 cut(s)	189, 364
Fsp4HI	GCNGC	2 cut(s)	118, 157
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	2 cut(s)	118, 157
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	38, 314
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	6 cut(s)	24, 37, 130, 163, 301, 313
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	17, 56, 306
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	65, 112
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	88, 231, 293, 374
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	3 cut(s)	88, 194, 293
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	53, 178
HpyCH4V	TGCA	2 cut(s)	4, 126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 123
HpyF3I	CTNAG	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	6 cut(s)	24, 37, 130, 163, 301, 313
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	196, 237
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	47, 214, 276, 342, 352
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	47, 131
MalI	GATC	2 cut(s)	198, 239
MboI	GATC	2 cut(s)	196, 237
MboII	GAAGA	2 cut(s)	142, 335
MflI	RGATCY	2 cut(s)	196, 237
MhlI	GDGCHC	2 cut(s)	189, 364
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	26, 315
MmeI	TCCRAC	4 cut(s)	66, 197, 271, 276
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	117, 123
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	196, 237
NlaIII	CATG	6 cut(s)	24, 37, 130, 163, 301, 313
NlaIV	GGNNCC	3 cut(s)	198, 247, 295
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	56
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	119, 158
PleI	GAGTC	2 cut(s)	25, 314
PpsI	GAGTC	2 cut(s)	25, 314
PpuMI	RGGWCCY	1 cut(s)	246
PshBI	ATTAAT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	198, 247, 295
PspPI	GGNCC	1 cut(s)	246
PspPPI	RGGWCCY	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	196, 237
PsyI	GACNNNGTC	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	120
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	118, 157
Sau3AI	GATC	2 cut(s)	196, 237
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	2 cut(s)	26, 315
SduI	GDGCHC	2 cut(s)	189, 364
SetI	ASST	4 cut(s)	122, 189, 251, 288
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	324
SsiI	CCGC	2 cut(s)	95, 156
SstI	GAGCTC	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	53, 178
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	131
TspRI	CASTG	1 cut(s)	66
Tth111I	GACNNNGTC	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	246
VspI	ATTAAT	1 cut(s)	324
XceI	RCATGY	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.