Prupe.1G221000_v2.0.a1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004777
Physical Location & Seq
Forward (+)
23564980 .. 23565869
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G221000.1

Sequence Viewer

Length: 384 bp
ATGATGCATTATCAGCAGGCAGAGGCGTCGTGGGGTTACTATGTGCCGGTGAGGATGAGCATGGGGGACCCACTGGAGCGGGTGGCGAGGTTGGCGGCGAAGAGCGCGGTGGTAATATTCAGTGTGAGCAGCTGCTGCATGTGCCATGCTGTCAAGAGGCTCTTCTGCGGGATGGGGGTCAATCCGACGGTGTATGAGCTGGACCAGGACCCCAGAGGGAAGGAGATCGAGAGGGCTCTCATGAGGTTGCTCGGCAACTCGCCGGCTGTTCCGGTGGTTTTTATTGGCGGCAAGCTCATCGGCACCATGGACAGAGTCATGGCTTCCCATATCAATGGCTCCCTGGTCCCACTTCTCAAGGAGGCTGGGGCCCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

128

Amino Acids

13.91

Weight (kDa)

8.78

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 79
AccII CGCG 1 cut(s) 107
AciI CCGC 5 cut(s) 79, 95, 107, 168, 288
AcyI GRCGYC 1 cut(s) 26
AjnI CCWGG 2 cut(s) 204, 342
AluBI AGCT 3 cut(s) 132, 199, 295
AluI AGCT 3 cut(s) 132, 199, 295
AlwNI CAGNNNCTG 1 cut(s) 135
AoxI GGCC 1 cut(s) 369
ApaI GGGCCC 1 cut(s) 373
ApeKI GCWGC 3 cut(s) 129, 132, 135
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 6 cut(s) 67, 202, 208, 346, 369, 370
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 4 cut(s) 67, 202, 208, 346
BaeGI GKGCMC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 238, 373
BbvI GCAGC 3 cut(s) 119, 122, 141
BccI CCATC 1 cut(s) 166
BcgI CGANNNNNNTGC 4 cut(s) 9, 43, 280, 314
BciT130I CCWGG 2 cut(s) 206, 344
BisI GCNGC 5 cut(s) 96, 130, 133, 136, 289
BlsI GCNGC 5 cut(s) 97, 131, 134, 137, 290
Bme1390I CCNGG 2 cut(s) 206, 344
Bme18I GGWCC 4 cut(s) 67, 202, 208, 346
BmgT120I GGNCC 6 cut(s) 67, 202, 208, 346, 369, 370
BmiI GGNNCC 8 cut(s) 68, 69, 210, 304, 340, 348, 370, 371
BmrFI CCNGG 2 cut(s) 206, 344
BpmI CTGGAG 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 306, 342
BsaWI WCCGGW 1 cut(s) 271
Bse118I RCCGGY 2 cut(s) 46, 262
Bse1I ACTGG 1 cut(s) 78
BseBI CCWGG 2 cut(s) 206, 344
BseDI CCNNGG 2 cut(s) 306, 342
BseGI GGATG 2 cut(s) 60, 177
BseNI ACTGG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 3 cut(s) 119, 122, 141
BseYI CCCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 371
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 3 cut(s) 47, 263, 272
BslFI GGGAC 2 cut(s) 80, 332
BsmFI GGGAC 2 cut(s) 80, 332
BsnI GGCC 1 cut(s) 371
Bsp120I GGGCCC 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 238, 373
Bsp143I GATC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 5 cut(s) 79, 95, 107, 168, 288
BspANI GGCC 1 cut(s) 371
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 8 cut(s) 68, 69, 210, 304, 340, 348, 370, 371
BspQI GCTCTTC 2 cut(s) 95, 167
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 79
BsrFI RCCGGY 2 cut(s) 46, 262
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 2 cut(s) 46, 262
BssECI CCNNGG 2 cut(s) 306, 342
BssMI GATC 1 cut(s) 225
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 206, 344
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 95, 167
BstACI GRCGYC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 18, 264, 293
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 60, 177
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 5 cut(s) 13, 92, 104, 135, 141
BstNI CCWGG 2 cut(s) 206, 344
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 204, 342
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 119, 122, 141
BstXI CCANNNNNNTGG 1 cut(s) 335
BsuRI GGCC 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 60, 177
BtsIMutI CAGTG 2 cut(s) 71, 127
Cac8I GCNNGC 3 cut(s) 18, 264, 293
CaiI CAGNNNCTG 1 cut(s) 135
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 2 cut(s) 46, 262
Cfr13I GGNCC 6 cut(s) 67, 202, 208, 346, 369, 370
CseI GACGC 1 cut(s) 15
CviAII CATG 6 cut(s) 61, 139, 146, 241, 307, 319
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 95, 167
EarI CTCTTC 2 cut(s) 95, 167
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 238, 373
Eco47I GGWCC 4 cut(s) 67, 202, 208, 346
EcoO109I RGGNCCY 4 cut(s) 67, 208, 369, 370
EcoRII CCWGG 2 cut(s) 204, 342
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 9
EcoT38I GRGCYC 2 cut(s) 238, 373
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 64, 142, 149, 244, 310, 322
FaiI YATR 9 cut(s) 42, 62, 140, 147, 195, 242, 308, 320, 330
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 2 cut(s) 80, 332
FatI CATG 6 cut(s) 60, 138, 145, 240, 306, 318
FauI CCCGC 2 cut(s) 72, 161
Fnu4HI GCNGC 5 cut(s) 96, 130, 133, 136, 289
FokI GGATG 2 cut(s) 67, 184
FriOI GRGCYC 2 cut(s) 238, 373
Fsp4HI GCNGC 5 cut(s) 96, 130, 133, 136, 289
GlaI GCGC 1 cut(s) 106
GluI GCNGC 5 cut(s) 96, 130, 133, 136, 289
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 1 cut(s) 371
HapII CCGG 3 cut(s) 47, 263, 272
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 6 cut(s) 64, 142, 149, 244, 310, 322
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 1 cut(s) 315
HpaII CCGG 3 cut(s) 47, 263, 272
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 186, 383
Hpy188III TCNNGA 3 cut(s) 154, 229, 241
Hpy99I CGWCG 2 cut(s) 31, 190
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 7, 138
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 92, 104, 135, 141
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 6 cut(s) 64, 142, 149, 244, 310, 322
HspAI GCGC 1 cut(s) 105
KflI GGGWCCC 1 cut(s) 67
KroI GCCGGC 1 cut(s) 262
KroNI GCCGGC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 225
LguI GCTCTTC 2 cut(s) 95, 167
LmnI GCTCC 2 cut(s) 76, 344
Lsp1109I GCAGC 3 cut(s) 119, 122, 141
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 227
MbiI CCGCTC 1 cut(s) 79
MboI GATC 1 cut(s) 225
MboII GAAGA 2 cut(s) 112, 154
MhlI GDGCHC 2 cut(s) 238, 373
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 9 cut(s) 16, 45, 81, 150, 209, 225, 237, 355, 383
Mph1103I ATGCAT 1 cut(s) 9
MroNI GCCGGC 1 cut(s) 262
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 3 cut(s) 47, 263, 272
MspR9I CCNGG 2 cut(s) 206, 344
MvaI CCWGG 2 cut(s) 206, 344
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 5 cut(s) 13, 92, 104, 135, 141
NaeI GCCGGC 1 cut(s) 264
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 225
NgoMIV GCCGGC 1 cut(s) 262
NlaIII CATG 6 cut(s) 64, 142, 149, 244, 310, 322
NlaIV GGNNCC 8 cut(s) 68, 69, 210, 304, 340, 348, 370, 371
NmeAIII GCCGAG 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 9
NspI RCATGY 1 cut(s) 142
PagI TCATGA 1 cut(s) 240
PciSI GCTCTTC 2 cut(s) 95, 167
PdiI GCCGGC 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 5 cut(s) 97, 131, 134, 137, 290
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PpuMI RGGWCCY 2 cut(s) 67, 208
Psp5II RGGWCCY 2 cut(s) 67, 208
Psp6I CCWGG 2 cut(s) 204, 342
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 2 cut(s) 204, 342
PspN4I GGNNCC 8 cut(s) 68, 69, 210, 304, 340, 348, 370, 371
PspOMI GGGCCC 1 cut(s) 369
PspPI GGNCC 6 cut(s) 67, 202, 208, 346, 369, 370
PspPPI RGGWCCY 2 cut(s) 67, 208
PstNI CAGNNNCTG 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 333
SapI GCTCTTC 2 cut(s) 95, 167
SatI GCNGC 5 cut(s) 96, 130, 133, 136, 289
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 6 cut(s) 67, 202, 208, 346, 369, 370
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 2 cut(s) 206, 344
SduI GDGCHC 2 cut(s) 238, 373
SetI ASST 5 cut(s) 92, 134, 201, 248, 297
SinI GGWCC 4 cut(s) 67, 202, 208, 346
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SsiI CCGC 5 cut(s) 79, 95, 107, 168, 288
SspI AATATT 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 204, 342
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 228
TauI GCSGC 2 cut(s) 98, 291
TscAI CASTG 2 cut(s) 78, 127
TseI GCWGC 3 cut(s) 129, 132, 135
TspRI CASTG 2 cut(s) 78, 127
Tth111I GACNNNGTC 1 cut(s) 314
VpaK11BI GGWCC 4 cut(s) 67, 202, 208, 346
XceI RCATGY 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.