FvH4_6g53900

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004777
Physical Location & Seq
Forward (+)
39446513 .. 39447438
926 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53900.t1

Sequence Viewer

Length: 378 bp
ATGCATTACCAAACCGAGTCGTGGGGTTCTTACATGGTTACAAGGAGCAGTTACAGTGATCCACTGGAGCGCATAGAGAGGATGGCGTCAGAGAGCGCGGTGGTGATATTCAGCGTAAGCACCTGTTGCATGTGTCACGCCATCAAGAGGCTCTTCTGCGGCATGGGGGTCAATCCAACGGTGTACGAGCTTGACGAGGATCCCAGAGGAGGCAAGGACTTGGAGAGGGCTCTGATGAGGCTCATGGGGACTTCCAACGCCGTGCCGGTGGTCTTCATCGGTGGGAAGCTTGTCGGAACCATGGACAGAGTCATGGCCTCGCACATTAATGGCTCGCTCGTACCTCTTCTCAAACAGGCTGGGGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

126

Amino Acids

13.78

Weight (kDa)

6.81

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 34 - 98 1.4e-14 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AciI CCGC 2 cut(s) 98, 159
AclWI GGATC 3 cut(s) 53, 194, 207
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 185, 342
AfiI CCNNNNNNNGG 3 cut(s) 21, 147, 209
AluBI AGCT 2 cut(s) 190, 289
AluI AGCT 2 cut(s) 190, 289
AlwI GGATC 3 cut(s) 53, 194, 207
AoxI GGCC 1 cut(s) 315
AseI ATTAAT 1 cut(s) 327
AspLEI GCGC 2 cut(s) 72, 98
AsuHPI GGTGA 1 cut(s) 115
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 2 cut(s) 232, 367
BbsI GAAGAC 1 cut(s) 265
BccI CCATC 2 cut(s) 76, 149
BceAI ACGGC 1 cut(s) 245
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 201, 298
BpiI GAAGAC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 147, 209
Bse118I RCCGGY 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 21, 147, 209
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 222
BseYI CCCAGC 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 3 cut(s) 21, 147, 209
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 2 cut(s) 232, 367
Bsp143I GATC 2 cut(s) 58, 199
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 2 cut(s) 98, 159
BspANI GGCC 1 cut(s) 317
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 201, 298
BspPI GGATC 3 cut(s) 53, 194, 207
BspQI GCTCTTC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 265
BsrI ACTGG 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 58, 199
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 56, 181
Bst6I CTCTTC 2 cut(s) 158, 351
BstACI GRCGYC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 2 cut(s) 72, 98
BstKTI GATC 2 cut(s) 61, 202
BstMBI GATC 2 cut(s) 58, 199
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 133
BstUI CGCG 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 61, 62
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 2 cut(s) 72, 98
Cfr10I RCCGGY 1 cut(s) 265
CseI GACGC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 184, 341
CviAII CATG 6 cut(s) 34, 130, 163, 244, 301, 313
CviQI GTAC 2 cut(s) 184, 341
DpnI GATC 2 cut(s) 60, 201
DpnII GATC 2 cut(s) 58, 199
Eam1104I CTCTTC 2 cut(s) 158, 351
EarI CTCTTC 2 cut(s) 158, 351
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 232, 367
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 232, 367
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 6 cut(s) 37, 133, 166, 247, 304, 316
FaiI YATR 7 cut(s) 35, 74, 131, 164, 245, 302, 314
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 262
FatI CATG 6 cut(s) 33, 129, 162, 243, 300, 312
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 2 cut(s) 232, 367
Fsp4HI GCNGC 1 cut(s) 160
GlaI GCGC 2 cut(s) 71, 97
GluI GCNGC 1 cut(s) 160
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 317
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 75
HhaI GCGC 2 cut(s) 72, 98
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 6 cut(s) 37, 133, 166, 247, 304, 316
Hin6I GCGC 2 cut(s) 70, 96
HinP1I GCGC 2 cut(s) 70, 96
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 2 cut(s) 17, 309
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 4 cut(s) 91, 234, 296, 377
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 56, 181
HpyCH4V TGCA 2 cut(s) 4, 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 6 cut(s) 37, 133, 166, 247, 304, 316
HspAI GCGC 2 cut(s) 70, 96
Kzo9I GATC 2 cut(s) 58, 199
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 45, 67
LpnPI CCDG 7 cut(s) 50, 136, 217, 279, 341, 345, 355
MaeIII GTNAC 3 cut(s) 37, 50, 134
MalI GATC 2 cut(s) 60, 201
MboI GATC 2 cut(s) 58, 199
MboII GAAGA 3 cut(s) 145, 265, 338
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 232, 367
MlyI GAGTC 2 cut(s) 26, 318
MmeI TCCRAC 3 cut(s) 200, 274, 279
MnlI CCTC 9 cut(s) 72, 141, 190, 200, 203, 219, 231, 328, 354
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 327
MspI CCGG 1 cut(s) 266
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 126
NcoI CCATGG 1 cut(s) 300
NdeII GATC 2 cut(s) 58, 199
NlaIII CATG 6 cut(s) 37, 133, 166, 247, 304, 316
NlaIV GGNNCC 2 cut(s) 201, 298
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 2 cut(s) 25, 317
PpsI GAGTC 2 cut(s) 25, 317
PshBI ATTAAT 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 201, 298
PsuI RGATCY 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 2 cut(s) 185, 342
RsaNI GTAC 2 cut(s) 184, 341
RseI CAYNNNNRTG 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 2 cut(s) 58, 199
SchI GAGTC 2 cut(s) 26, 318
SduI GDGCHC 2 cut(s) 232, 367
SetI ASST 4 cut(s) 125, 192, 291, 346
SmiMI CAYNNNNRTG 1 cut(s) 327
SsiI CCGC 2 cut(s) 98, 159
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 56, 181
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 2 cut(s) 61, 69
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 2 cut(s) 61, 69
Tth111I GACNNNGTC 1 cut(s) 308
VspI ATTAAT 1 cut(s) 327
XceI RCATGY 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.