DJ-1/PfpI family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02720 |
| fragaria_vesca | FvH4_1g27590 FvH4_7g05680 |
| malus_domestica | MD09G1281500.v1.1 MD09G1281600.v1.1 |
| prunus_persica | Prupe.3G022000_v2.0.a1 |
| pyrus_communis | pycom09g18920 pycom09g18960 |
| rosa_chinensis | RchiOBHm_Chr3g0487821 RchiOBHm_Chr3g0487831 RchiOBHm_Chr3g0487891 RchiOBHm_Chr3g0487941 RchiOBHm_Chr3g0487981 |
| rosa_laevigata | RLG00000022952 RLG00000022958 RLG00000022959 RLG00000022969 |
| rosa_multiflora | Rmu_sc0004448.1_g000032 |
| rosa_roxburghii | Rroxscaffold_3G00252270 Rroxscaffold_6G00394380 Rroxscaffold_6G00394420 |
| rosa_rugosa | Rorug03G0237400 Rorug03G0237500 Rorug03G0237500 |
| rosa_samantha | Rh3AG284900 Rh3AG285300 Rh3AG285600 Rh3BG321900 Rh3BG322300 Rh3CG320900 Rh3DG319100 |
| rosa_wichuraiana | Rw0G004650 Rw3G025290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 440 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 635 |
| Acc36I | ACCTGC | 1 cut(s) | 440 |
| AccB1I | GGYRCC | 1 cut(s) | 452 |
| AccIII | TCCGGA | 1 cut(s) | 478 |
| AciI | CCGC | 4 cut(s) | 33, 147, 570, 686 |
| AclI | AACGTT | 1 cut(s) | 218 |
| AclWI | GGATC | 2 cut(s) | 605, 1046 |
| AcoI | YGGCCR | 1 cut(s) | 166 |
| AcsI | RAATTY | 2 cut(s) | 539, 910 |
| AfaI | GTAC | 2 cut(s) | 412, 1023 |
| AflIII | ACRYGT | 1 cut(s) | 880 |
| AgsI | TTSAA | 2 cut(s) | 662, 874 |
| AjiI | CACGTC | 1 cut(s) | 272 |
| AjnI | CCWGG | 5 cut(s) | 262, 285, 769, 841, 1105 |
| Alw21I | GWGCWC | 2 cut(s) | 277, 856 |
| AlwI | GGATC | 2 cut(s) | 605, 1046 |
| Ama87I | CYCGRG | 2 cut(s) | 10, 817 |
| Aor13HI | TCCGGA | 1 cut(s) | 478 |
| AoxI | GGCC | 5 cut(s) | 166, 288, 772, 867, 1103 |
| ApeKI | GCWGC | 8 cut(s) | 380, 383, 446, 515, 717, 959, 962, 1097 |
| ApoI | RAATTY | 2 cut(s) | 539, 910 |
| AspLEI | GCGC | 1 cut(s) | 1097 |
| AspS9I | GGNCC | 1 cut(s) | 431 |
| AsuC2I | CCSGG | 2 cut(s) | 117, 1115 |
| AsuHPI | GGTGA | 6 cut(s) | 47, 70, 88, 143, 722, 758 |
| AvaI | CYCGRG | 2 cut(s) | 10, 817 |
| AvaII | GGWCC | 1 cut(s) | 431 |
| BalI | TGGCCA | 1 cut(s) | 168 |
| BanI | GGYRCC | 1 cut(s) | 452 |
| BauI | CACGAG | 1 cut(s) | 189 |
| BbsI | GAAGAC | 2 cut(s) | 54, 633 |
| Bbv12I | GWGCWC | 2 cut(s) | 277, 856 |
| BbvI | GCAGC | 8 cut(s) | 370, 392, 433, 527, 704, 946, 949, 1109 |
| BccI | CCATC | 3 cut(s) | 55, 242, 491 |
| BceAI | ACGGC | 2 cut(s) | 134, 989 |
| BciT130I | CCWGG | 5 cut(s) | 264, 287, 771, 843, 1107 |
| BcnI | CCSGG | 2 cut(s) | 117, 1115 |
| BfaI | CTAG | 3 cut(s) | 809, 1043, 1085 |
| BfmI | CTRYAG | 3 cut(s) | 384, 447, 513 |
| BfuAI | ACCTGC | 1 cut(s) | 440 |
| BglII | AGATCT | 2 cut(s) | 332, 951 |
| BisI | GCNGC | 8 cut(s) | 381, 384, 447, 516, 718, 960, 963, 1098 |
| BlsI | GCNGC | 8 cut(s) | 382, 385, 448, 517, 719, 961, 964, 1099 |
| Bme1390I | CCNGG | 7 cut(s) | 117, 264, 287, 771, 843, 1107, 1115 |
| Bme18I | GGWCC | 1 cut(s) | 431 |
| BmeT110I | CYCGRG | 2 cut(s) | 10, 817 |
| BmgBI | CACGTC | 1 cut(s) | 272 |
| BmgT120I | GGNCC | 1 cut(s) | 431 |
| BmiI | GGNNCC | 2 cut(s) | 66, 454 |
| BmrFI | CCNGG | 7 cut(s) | 117, 264, 287, 771, 843, 1107, 1115 |
| BmsI | GCATC | 3 cut(s) | 308, 673, 817 |
| BpiI | GAAGAC | 2 cut(s) | 54, 633 |
| BpmI | CTGGAG | 3 cut(s) | 261, 603, 864 |
| Bpu10I | CCTNAGC | 1 cut(s) | 236 |
| BpuEI | CTTGAG | 2 cut(s) | 313, 959 |
| BpuMI | CCSGG | 2 cut(s) | 117, 1115 |
| BsaJI | CCNNGG | 3 cut(s) | 115, 361, 940 |
| BsaWI | WCCGGW | 1 cut(s) | 478 |
| Bse1I | ACTGG | 4 cut(s) | 586, 652, 923, 1096 |
| Bse3DI | GCAATG | 1 cut(s) | 345 |
| BseAI | TCCGGA | 1 cut(s) | 478 |
| BseBI | CCWGG | 5 cut(s) | 264, 287, 771, 843, 1107 |
| BseDI | CCNNGG | 3 cut(s) | 115, 361, 940 |
| BseGI | GGATG | 3 cut(s) | 487, 532, 677 |
| BseMI | GCAATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 1 cut(s) | 906 |
| BseNI | ACTGG | 4 cut(s) | 586, 652, 923, 1096 |
| BseRI | GAGGAG | 1 cut(s) | 1044 |
| BseXI | GCAGC | 8 cut(s) | 370, 392, 433, 527, 704, 946, 949, 1109 |
| BshFI | GGCC | 5 cut(s) | 168, 290, 774, 869, 1105 |
| BshNI | GGYRCC | 1 cut(s) | 452 |
| BsiHKAI | GWGCWC | 2 cut(s) | 277, 856 |
| BsiHKCI | CYCGRG | 2 cut(s) | 10, 817 |
| BsiSI | CCGG | 3 cut(s) | 117, 479, 1115 |
| BslFI | GGGAC | 1 cut(s) | 640 |
| BsmFI | GGGAC | 1 cut(s) | 640 |
| BsmI | GAATGC | 1 cut(s) | 1149 |
| BsnI | GGCC | 5 cut(s) | 168, 290, 774, 869, 1105 |
| BsoBI | CYCGRG | 2 cut(s) | 10, 817 |
| Bsp1286I | GDGCHC | 2 cut(s) | 277, 856 |
| Bsp13I | TCCGGA | 1 cut(s) | 478 |
| Bsp1407I | TGTACA | 1 cut(s) | 410 |
| Bsp143I | GATC | 5 cut(s) | 332, 597, 712, 951, 1051 |
| Bsp19I | CCATGG | 1 cut(s) | 361 |
| BspACI | CCGC | 4 cut(s) | 33, 147, 570, 686 |
| BspANI | GGCC | 5 cut(s) | 168, 290, 774, 869, 1105 |
| BspCNI | CTCAG | 1 cut(s) | 907 |
| BspEI | TCCGGA | 1 cut(s) | 478 |
| BspHI | TCATGA | 1 cut(s) | 906 |
| BspLI | GGNNCC | 2 cut(s) | 66, 454 |
| BspMAI | CTGCAG | 3 cut(s) | 388, 451, 517 |
| BspMI | ACCTGC | 1 cut(s) | 440 |
| BspPI | GGATC | 2 cut(s) | 605, 1046 |
| BspT107I | GGYRCC | 1 cut(s) | 452 |
| BsrDI | GCAATG | 1 cut(s) | 345 |
| BsrGI | TGTACA | 1 cut(s) | 410 |
| BsrI | ACTGG | 4 cut(s) | 586, 652, 923, 1096 |
| BssECI | CCNNGG | 3 cut(s) | 115, 361, 940 |
| BssMI | GATC | 5 cut(s) | 332, 597, 712, 951, 1051 |
| BssSI | CACGAG | 1 cut(s) | 189 |
| BssT1I | CCWWGG | 1 cut(s) | 361 |
| Bst2BI | CACGAG | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 5 cut(s) | 264, 287, 771, 843, 1107 |
| Bst4CI | ACNGT | 6 cut(s) | 19, 100, 109, 394, 427, 761 |
| BstAUI | TGTACA | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 1 cut(s) | 341 |
| BstDEI | CTNAG | 3 cut(s) | 236, 915, 955 |
| BstDSI | CCRYGG | 2 cut(s) | 361, 940 |
| BstEII | GGTNACC | 1 cut(s) | 746 |
| BstF5I | GGATG | 3 cut(s) | 487, 532, 677 |
| BstHHI | GCGC | 1 cut(s) | 1097 |
| BstKTI | GATC | 5 cut(s) | 335, 600, 715, 954, 1054 |
| BstMBI | GATC | 5 cut(s) | 332, 597, 712, 951, 1051 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 83, 296, 452, 1001 |
| BstNI | CCWGG | 5 cut(s) | 264, 287, 771, 843, 1107 |
| BstNSI | RCATGY | 1 cut(s) | 884 |
| BstPI | GGTNACC | 1 cut(s) | 746 |
| BstSCI | CCNGG | 7 cut(s) | 115, 262, 285, 769, 841, 1105, 1113 |
| BstSFI | CTRYAG | 3 cut(s) | 384, 447, 513 |
| BstV1I | GCAGC | 8 cut(s) | 370, 392, 433, 527, 704, 946, 949, 1109 |
| BstV2I | GAAGAC | 2 cut(s) | 54, 633 |
| BstX2I | RGATCY | 4 cut(s) | 332, 597, 951, 1051 |
| BstYI | RGATCY | 4 cut(s) | 332, 597, 951, 1051 |
| BsuRI | GGCC | 5 cut(s) | 168, 290, 774, 869, 1105 |
| BtgI | CCRYGG | 2 cut(s) | 361, 940 |
| BtrI | CACGTC | 1 cut(s) | 272 |
| BtsCI | GGATG | 3 cut(s) | 487, 532, 677 |
| BtsI | GCAGTG | 1 cut(s) | 990 |
| BtsIMutI | CAGTG | 3 cut(s) | 766, 990, 1071 |
| BveI | ACCTGC | 1 cut(s) | 440 |
| Cac8I | GCNNGC | 1 cut(s) | 341 |
| CciI | TCATGA | 1 cut(s) | 906 |
| CfoI | GCGC | 1 cut(s) | 1097 |
| Cfr13I | GGNCC | 1 cut(s) | 431 |
| CseI | GACGC | 1 cut(s) | 918 |
| Csp6I | GTAC | 2 cut(s) | 411, 1022 |
| CviAII | CATG | 6 cut(s) | 43, 362, 734, 881, 907, 1101 |
| CviQI | GTAC | 2 cut(s) | 411, 1022 |
| DdeI | CTNAG | 3 cut(s) | 236, 915, 955 |
| DpnI | GATC | 5 cut(s) | 334, 599, 714, 953, 1053 |
| DpnII | GATC | 5 cut(s) | 332, 597, 712, 951, 1051 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 635 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 635 |
| EaeI | YGGCCR | 1 cut(s) | 166 |
| Eco130I | CCWWGG | 1 cut(s) | 361 |
| Eco47I | GGWCC | 1 cut(s) | 431 |
| Eco88I | CYCGRG | 2 cut(s) | 10, 817 |
| Eco91I | GGTNACC | 1 cut(s) | 746 |
| EcoO65I | GGTNACC | 1 cut(s) | 746 |
| EcoRI | GAATTC | 1 cut(s) | 910 |
| EcoRII | CCWGG | 5 cut(s) | 262, 285, 769, 841, 1105 |
| EcoT14I | CCWWGG | 1 cut(s) | 361 |
| ErhI | CCWWGG | 1 cut(s) | 361 |
| FaeI | CATG | 6 cut(s) | 46, 365, 737, 884, 910, 1104 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 219, 251 |
| FaqI | GGGAC | 1 cut(s) | 640 |
| FatI | CATG | 6 cut(s) | 42, 361, 733, 880, 906, 1100 |
| FauNDI | CATATG | 1 cut(s) | 523 |
| Fnu4HI | GCNGC | 8 cut(s) | 381, 384, 447, 516, 718, 960, 963, 1098 |
| FokI | GGATG | 3 cut(s) | 494, 519, 684 |
| Fsp4HI | GCNGC | 8 cut(s) | 381, 384, 447, 516, 718, 960, 963, 1098 |
| FspBI | CTAG | 3 cut(s) | 809, 1043, 1085 |
| GlaI | GCGC | 1 cut(s) | 1096 |
| GluI | GCNGC | 8 cut(s) | 381, 384, 447, 516, 718, 960, 963, 1098 |
| GsuI | CTGGAG | 3 cut(s) | 261, 603, 864 |
| HaeIII | GGCC | 5 cut(s) | 168, 290, 774, 869, 1105 |
| HapII | CCGG | 3 cut(s) | 117, 479, 1115 |
| HgaI | GACGC | 1 cut(s) | 918 |
| HhaI | GCGC | 1 cut(s) | 1097 |
| Hin1II | CATG | 6 cut(s) | 46, 365, 737, 884, 910, 1104 |
| Hin6I | GCGC | 1 cut(s) | 1095 |
| HinP1I | GCGC | 1 cut(s) | 1095 |
| HincII | GTYRAC | 1 cut(s) | 232 |
| HindII | GTYRAC | 1 cut(s) | 232 |
| HindIII | AAGCTT | 3 cut(s) | 75, 84, 663 |
| HinfI | GANTC | 4 cut(s) | 93, 134, 185, 1081 |
| HpaII | CCGG | 3 cut(s) | 117, 479, 1115 |
| HphI | GGTGA | 6 cut(s) | 47, 70, 88, 143, 722, 758 |
| Hpy166II | GTNNAC | 3 cut(s) | 103, 154, 232 |
| Hpy188I | TCNGA | 2 cut(s) | 92, 916 |
| Hpy188III | TCNNGA | 9 cut(s) | 12, 155, 189, 278, 330, 479, 536, 695, 907 |
| Hpy8I | GTNNAC | 3 cut(s) | 103, 154, 232 |
| HpyAV | CCTTC | 4 cut(s) | 444, 668, 697, 975 |
| HpyCH4III | ACNGT | 6 cut(s) | 19, 100, 109, 394, 427, 761 |
| HpyCH4IV | ACGT | 3 cut(s) | 218, 271, 1017 |
| HpyCH4V | TGCA | 8 cut(s) | 215, 299, 386, 422, 449, 515, 728, 990 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 83, 296, 452, 1001 |
| HpyF3I | CTNAG | 3 cut(s) | 236, 915, 955 |
| HpySE526I | ACGT | 3 cut(s) | 218, 271, 1017 |
| Hsp92II | CATG | 6 cut(s) | 46, 365, 737, 884, 910, 1104 |
| HspAI | GCGC | 1 cut(s) | 1095 |
| Kpn2I | TCCGGA | 1 cut(s) | 478 |
| Kzo9I | GATC | 5 cut(s) | 332, 597, 712, 951, 1051 |
| LmnI | GCTCC | 2 cut(s) | 280, 584 |
| Lsp1109I | GCAGC | 8 cut(s) | 370, 392, 433, 527, 704, 946, 949, 1109 |
| LweI | GCATC | 3 cut(s) | 308, 673, 817 |
| MaeI | CTAG | 3 cut(s) | 809, 1043, 1085 |
| MaeII | ACGT | 3 cut(s) | 218, 271, 1017 |
| MaeIII | GTNAC | 6 cut(s) | 35, 131, 186, 194, 746, 1087 |
| MalI | GATC | 5 cut(s) | 334, 599, 714, 953, 1053 |
| MboI | GATC | 5 cut(s) | 332, 597, 712, 951, 1051 |
| MboII | GAAGA | 3 cut(s) | 59, 638, 712 |
| MflI | RGATCY | 4 cut(s) | 332, 597, 951, 1051 |
| MhlI | GDGCHC | 2 cut(s) | 277, 856 |
| MlsI | TGGCCA | 1 cut(s) | 168 |
| MluCI | AATT | 3 cut(s) | 199, 539, 910 |
| MluNI | TGGCCA | 1 cut(s) | 168 |
| MlyI | GAGTC | 2 cut(s) | 128, 194 |
| MmeI | TCCRAC | 1 cut(s) | 409 |
| Mox20I | TGGCCA | 1 cut(s) | 168 |
| MroI | TCCGGA | 1 cut(s) | 478 |
| MscI | TGGCCA | 1 cut(s) | 168 |
| MseI | TTAA | 5 cut(s) | 23, 318, 788, 888, 897 |
| Msp20I | TGGCCA | 1 cut(s) | 168 |
| MspA1I | CMGCKG | 1 cut(s) | 383 |
| MspI | CCGG | 3 cut(s) | 117, 479, 1115 |
| MspR9I | CCNGG | 7 cut(s) | 117, 264, 287, 771, 843, 1107, 1115 |
| Mva1269I | GAATGC | 1 cut(s) | 1149 |
| MvaI | CCWGG | 5 cut(s) | 264, 287, 771, 843, 1107 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 83, 296, 452, 1001 |
| NciI | CCSGG | 2 cut(s) | 117, 1115 |
| NcoI | CCATGG | 1 cut(s) | 361 |
| NdeI | CATATG | 1 cut(s) | 523 |
| NdeII | GATC | 5 cut(s) | 332, 597, 712, 951, 1051 |
| NlaIII | CATG | 6 cut(s) | 46, 365, 737, 884, 910, 1104 |
| NlaIV | GGNNCC | 2 cut(s) | 66, 454 |
| NmuCI | GTSAC | 5 cut(s) | 35, 131, 186, 194, 746 |
| NspI | RCATGY | 1 cut(s) | 884 |
| PaeR7I | CTCGAG | 2 cut(s) | 10, 817 |
| PagI | TCATGA | 1 cut(s) | 906 |
| PaqCI | CACCTGC | 1 cut(s) | 440 |
| PciI | ACATGT | 1 cut(s) | 880 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 96 |
| PctI | GAATGC | 1 cut(s) | 1149 |
| PfeI | GAWTC | 2 cut(s) | 93, 1081 |
| PflFI | GACNNNGTC | 1 cut(s) | 392 |
| PfoI | TCCNGGA | 1 cut(s) | 841 |
| PkrI | GCNGC | 8 cut(s) | 382, 385, 448, 517, 719, 961, 964, 1099 |
| PleI | GAGTC | 2 cut(s) | 128, 193 |
| PpsI | GAGTC | 2 cut(s) | 128, 193 |
| PscI | ACATGT | 1 cut(s) | 880 |
| Psp1406I | AACGTT | 1 cut(s) | 218 |
| Psp6I | CCWGG | 5 cut(s) | 262, 285, 769, 841, 1105 |
| PspEI | GGTNACC | 1 cut(s) | 746 |
| PspGI | CCWGG | 5 cut(s) | 262, 285, 769, 841, 1105 |
| PspN4I | GGNNCC | 2 cut(s) | 66, 454 |
| PspPI | GGNCC | 1 cut(s) | 431 |
| PspXI | VCTCGAGB | 1 cut(s) | 817 |
| PstI | CTGCAG | 3 cut(s) | 388, 451, 517 |
| PsuI | RGATCY | 4 cut(s) | 332, 597, 951, 1051 |
| PsyI | GACNNNGTC | 1 cut(s) | 392 |
| PvuII | CAGCTG | 1 cut(s) | 383 |
| RsaI | GTAC | 2 cut(s) | 412, 1023 |
| RsaNI | GTAC | 2 cut(s) | 411, 1022 |
| SaqAI | TTAA | 5 cut(s) | 23, 318, 788, 888, 897 |
| SatI | GCNGC | 8 cut(s) | 381, 384, 447, 516, 718, 960, 963, 1098 |
| Sau3AI | GATC | 5 cut(s) | 332, 597, 712, 951, 1051 |
| Sau96I | GGNCC | 1 cut(s) | 431 |
| SchI | GAGTC | 2 cut(s) | 128, 194 |
| ScrFI | CCNGG | 7 cut(s) | 117, 264, 287, 771, 843, 1107, 1115 |
| SduI | GDGCHC | 2 cut(s) | 277, 856 |
| SfaNI | GCATC | 3 cut(s) | 308, 673, 817 |
| SfcI | CTRYAG | 3 cut(s) | 384, 447, 513 |
| Sfr274I | CTCGAG | 2 cut(s) | 10, 817 |
| SinI | GGWCC | 1 cut(s) | 431 |
| SlaI | CTCGAG | 2 cut(s) | 10, 817 |
| SmlI | CTYRAG | 4 cut(s) | 10, 328, 817, 974 |
| SmoI | CTYRAG | 4 cut(s) | 10, 328, 817, 974 |
| Sse9I | AATT | 3 cut(s) | 199, 539, 910 |
| SsiI | CCGC | 4 cut(s) | 33, 147, 570, 686 |
| SspMI | CTAG | 3 cut(s) | 809, 1043, 1085 |
| StyD4I | CCNGG | 7 cut(s) | 115, 262, 285, 769, 841, 1105, 1113 |
| StyI | CCWWGG | 1 cut(s) | 361 |
| TaaI | ACNGT | 6 cut(s) | 19, 100, 109, 394, 427, 761 |
| TaiI | ACGT | 3 cut(s) | 221, 274, 1020 |
| TaqI | TCGA | 5 cut(s) | 11, 403, 465, 818, 1059 |
| TasI | AATT | 3 cut(s) | 199, 539, 910 |
| TatI | WGTACW | 1 cut(s) | 410 |
| TfiI | GAWTC | 2 cut(s) | 93, 1081 |
| Tru1I | TTAA | 5 cut(s) | 23, 318, 788, 888, 897 |
| Tru9I | TTAA | 5 cut(s) | 23, 318, 788, 888, 897 |
| TscAI | CASTG | 3 cut(s) | 766, 997, 1078 |
| TseFI | GTSAC | 5 cut(s) | 35, 131, 186, 194, 746 |
| TseI | GCWGC | 8 cut(s) | 380, 383, 446, 515, 717, 959, 962, 1097 |
| Tsp45I | GTSAC | 5 cut(s) | 35, 131, 186, 194, 746 |
| TspDTI | ATGAA | 5 cut(s) | 240, 648, 895, 923, 1149 |
| TspGWI | ACGGA | 2 cut(s) | 57, 957 |
| TspRI | CASTG | 3 cut(s) | 766, 997, 1078 |
| Tth111I | GACNNNGTC | 1 cut(s) | 392 |
| VpaK11BI | GGWCC | 1 cut(s) | 431 |
| XapI | RAATTY | 2 cut(s) | 539, 910 |
| XceI | RCATGY | 1 cut(s) | 884 |
| XhoI | CTCGAG | 2 cut(s) | 10, 817 |
| XspI | CTAG | 3 cut(s) | 809, 1043, 1085 |