AT3G02720

DJ-1/PfpI family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
586224 .. 588365
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02720.1

Sequence Viewer

Length: 1167 bp
ATGGCGAACTCGAGAACTGTCTTAATCTTGTGCGGTGACTACATGGAAGACTACGAGGTGATGGTTCCGTTCCAAGCTTTACAAGCTTTCGGAATCACCGTCCACACCGTCTGCCCCGGAAAGAAAGCTGGTGACTCTTGCCCCACCGCCGTTCACGATTTTTGTGGCCACCAGACATATTTTGAGTCACGAGGTCACAATTTCACGCTCAATGCAACGTTTGATGAAGTTGACCTTAGCAAGTATGATGGATTGGTTATACCAGGAGGACGTGCTCCAGAATACCTGGCCTTGACTGCATCTGTTGTTGAGCTGGTTAAAGAGTTCTCAAGATCTGGCAAGCCCATTGCCTCTATTTGCCATGGGCAGTTGATATTGGCAGCTGCAGACACAGTCAATGGTCGAAAATGTACAGCTTATGCAACTGTTGGACCTTCCCTTGTTGCTGCAGGTGCCAAGTGGGTCGAACCGATAACTCCGGATGTCTGTGTTGTTGATGGTAGTTTGATTACTGCAGCTACATATGAGGGTCATCCTGAATTTATCCAGCTTTTTGTCAAGGCTCTTGGCGGTAAAATAACTGGAGCAAATAAAAGGATCTTGTTTCTTTGTGGGGATTATATGGAAGACTATGAAGTCAAAGTGCCTTTCCAGTCCCTTCAAGCTTTGGGATGTCAAGTTGATGCGGTTTGTCCAGAGAAGAAGGCTGGTGATCGCTGCCCAACTGCAATCCATGACTTTGAGGGTGACCAAACTTACAGTGAGAAACCAGGCCACACTTTTGCTTTAACTACTAACTTTGATGACCTAGTTTCCTCGAGTTATGATGCTCTGGTCATTCCTGGAGGCAGAGCACCAGAATATCTGGCCTTGAACGAACATGTCCTTAACATAGTTAAAGAGTTCATGAATTCTGAGAAACCAGTTGCGTCTATTTGCCACGGACAACAGATCTTAGCTGCTGCTGGTGTCCTCAAGGGAAGGAAATGCACTGCTTATCCAGCCGTGAAACTGAACGTGGTACTTGGAGGAGGAACTTGGCTAGAACCAGATCCAATCGACAGGTGCTTCACTGACGGGAATCTAGTAACTGGCGCAGCATGGCCTGGACACCCGGAGTTTGTTTCACAACTAATGGCTTTGTTGGGCATTCAGGTTTCATTCTAA

Protein Analysis

388

Amino Acids

41.65

Weight (kDa)

5.21

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 6 - 187 1.5e-46 DJ-1/PfpI family
DJ-1_PfpI PF01965 198 - 380 2e-49 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 440
AasI GACNNNNNNGTC 1 cut(s) 635
Acc36I ACCTGC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 452
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 4 cut(s) 33, 147, 570, 686
AclI AACGTT 1 cut(s) 218
AclWI GGATC 2 cut(s) 605, 1046
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 2 cut(s) 539, 910
AfaI GTAC 2 cut(s) 412, 1023
AflIII ACRYGT 1 cut(s) 880
AgsI TTSAA 2 cut(s) 662, 874
AjiI CACGTC 1 cut(s) 272
AjnI CCWGG 5 cut(s) 262, 285, 769, 841, 1105
Alw21I GWGCWC 2 cut(s) 277, 856
AlwI GGATC 2 cut(s) 605, 1046
Ama87I CYCGRG 2 cut(s) 10, 817
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 5 cut(s) 166, 288, 772, 867, 1103
ApeKI GCWGC 8 cut(s) 380, 383, 446, 515, 717, 959, 962, 1097
ApoI RAATTY 2 cut(s) 539, 910
AspLEI GCGC 1 cut(s) 1097
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 2 cut(s) 117, 1115
AsuHPI GGTGA 6 cut(s) 47, 70, 88, 143, 722, 758
AvaI CYCGRG 2 cut(s) 10, 817
AvaII GGWCC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 168
BanI GGYRCC 1 cut(s) 452
BauI CACGAG 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 54, 633
Bbv12I GWGCWC 2 cut(s) 277, 856
BbvI GCAGC 8 cut(s) 370, 392, 433, 527, 704, 946, 949, 1109
BccI CCATC 3 cut(s) 55, 242, 491
BceAI ACGGC 2 cut(s) 134, 989
BciT130I CCWGG 5 cut(s) 264, 287, 771, 843, 1107
BcnI CCSGG 2 cut(s) 117, 1115
BfaI CTAG 3 cut(s) 809, 1043, 1085
BfmI CTRYAG 3 cut(s) 384, 447, 513
BfuAI ACCTGC 1 cut(s) 440
BglII AGATCT 2 cut(s) 332, 951
BisI GCNGC 8 cut(s) 381, 384, 447, 516, 718, 960, 963, 1098
BlsI GCNGC 8 cut(s) 382, 385, 448, 517, 719, 961, 964, 1099
Bme1390I CCNGG 7 cut(s) 117, 264, 287, 771, 843, 1107, 1115
Bme18I GGWCC 1 cut(s) 431
BmeT110I CYCGRG 2 cut(s) 10, 817
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 66, 454
BmrFI CCNGG 7 cut(s) 117, 264, 287, 771, 843, 1107, 1115
BmsI GCATC 3 cut(s) 308, 673, 817
BpiI GAAGAC 2 cut(s) 54, 633
BpmI CTGGAG 3 cut(s) 261, 603, 864
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 2 cut(s) 313, 959
BpuMI CCSGG 2 cut(s) 117, 1115
BsaJI CCNNGG 3 cut(s) 115, 361, 940
BsaWI WCCGGW 1 cut(s) 478
Bse1I ACTGG 4 cut(s) 586, 652, 923, 1096
Bse3DI GCAATG 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 5 cut(s) 264, 287, 771, 843, 1107
BseDI CCNNGG 3 cut(s) 115, 361, 940
BseGI GGATG 3 cut(s) 487, 532, 677
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 906
BseNI ACTGG 4 cut(s) 586, 652, 923, 1096
BseRI GAGGAG 1 cut(s) 1044
BseXI GCAGC 8 cut(s) 370, 392, 433, 527, 704, 946, 949, 1109
BshFI GGCC 5 cut(s) 168, 290, 774, 869, 1105
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 277, 856
BsiHKCI CYCGRG 2 cut(s) 10, 817
BsiSI CCGG 3 cut(s) 117, 479, 1115
BslFI GGGAC 1 cut(s) 640
BsmFI GGGAC 1 cut(s) 640
BsmI GAATGC 1 cut(s) 1149
BsnI GGCC 5 cut(s) 168, 290, 774, 869, 1105
BsoBI CYCGRG 2 cut(s) 10, 817
Bsp1286I GDGCHC 2 cut(s) 277, 856
Bsp13I TCCGGA 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 410
Bsp143I GATC 5 cut(s) 332, 597, 712, 951, 1051
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 4 cut(s) 33, 147, 570, 686
BspANI GGCC 5 cut(s) 168, 290, 774, 869, 1105
BspCNI CTCAG 1 cut(s) 907
BspEI TCCGGA 1 cut(s) 478
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 2 cut(s) 66, 454
BspMAI CTGCAG 3 cut(s) 388, 451, 517
BspMI ACCTGC 1 cut(s) 440
BspPI GGATC 2 cut(s) 605, 1046
BspT107I GGYRCC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 345
BsrGI TGTACA 1 cut(s) 410
BsrI ACTGG 4 cut(s) 586, 652, 923, 1096
BssECI CCNNGG 3 cut(s) 115, 361, 940
BssMI GATC 5 cut(s) 332, 597, 712, 951, 1051
BssSI CACGAG 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 5 cut(s) 264, 287, 771, 843, 1107
Bst4CI ACNGT 6 cut(s) 19, 100, 109, 394, 427, 761
BstAUI TGTACA 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 3 cut(s) 236, 915, 955
BstDSI CCRYGG 2 cut(s) 361, 940
BstEII GGTNACC 1 cut(s) 746
BstF5I GGATG 3 cut(s) 487, 532, 677
BstHHI GCGC 1 cut(s) 1097
BstKTI GATC 5 cut(s) 335, 600, 715, 954, 1054
BstMBI GATC 5 cut(s) 332, 597, 712, 951, 1051
BstMWI GCNNNNNNNGC 4 cut(s) 83, 296, 452, 1001
BstNI CCWGG 5 cut(s) 264, 287, 771, 843, 1107
BstNSI RCATGY 1 cut(s) 884
BstPI GGTNACC 1 cut(s) 746
BstSCI CCNGG 7 cut(s) 115, 262, 285, 769, 841, 1105, 1113
BstSFI CTRYAG 3 cut(s) 384, 447, 513
BstV1I GCAGC 8 cut(s) 370, 392, 433, 527, 704, 946, 949, 1109
BstV2I GAAGAC 2 cut(s) 54, 633
BstX2I RGATCY 4 cut(s) 332, 597, 951, 1051
BstYI RGATCY 4 cut(s) 332, 597, 951, 1051
BsuRI GGCC 5 cut(s) 168, 290, 774, 869, 1105
BtgI CCRYGG 2 cut(s) 361, 940
BtrI CACGTC 1 cut(s) 272
BtsCI GGATG 3 cut(s) 487, 532, 677
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 3 cut(s) 766, 990, 1071
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 341
CciI TCATGA 1 cut(s) 906
CfoI GCGC 1 cut(s) 1097
Cfr13I GGNCC 1 cut(s) 431
CseI GACGC 1 cut(s) 918
Csp6I GTAC 2 cut(s) 411, 1022
CviAII CATG 6 cut(s) 43, 362, 734, 881, 907, 1101
CviQI GTAC 2 cut(s) 411, 1022
DdeI CTNAG 3 cut(s) 236, 915, 955
DpnI GATC 5 cut(s) 334, 599, 714, 953, 1053
DpnII GATC 5 cut(s) 332, 597, 712, 951, 1051
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 431
Eco88I CYCGRG 2 cut(s) 10, 817
Eco91I GGTNACC 1 cut(s) 746
EcoO65I GGTNACC 1 cut(s) 746
EcoRI GAATTC 1 cut(s) 910
EcoRII CCWGG 5 cut(s) 262, 285, 769, 841, 1105
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 6 cut(s) 46, 365, 737, 884, 910, 1104
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 640
FatI CATG 6 cut(s) 42, 361, 733, 880, 906, 1100
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 8 cut(s) 381, 384, 447, 516, 718, 960, 963, 1098
FokI GGATG 3 cut(s) 494, 519, 684
Fsp4HI GCNGC 8 cut(s) 381, 384, 447, 516, 718, 960, 963, 1098
FspBI CTAG 3 cut(s) 809, 1043, 1085
GlaI GCGC 1 cut(s) 1096
GluI GCNGC 8 cut(s) 381, 384, 447, 516, 718, 960, 963, 1098
GsuI CTGGAG 3 cut(s) 261, 603, 864
HaeIII GGCC 5 cut(s) 168, 290, 774, 869, 1105
HapII CCGG 3 cut(s) 117, 479, 1115
HgaI GACGC 1 cut(s) 918
HhaI GCGC 1 cut(s) 1097
Hin1II CATG 6 cut(s) 46, 365, 737, 884, 910, 1104
Hin6I GCGC 1 cut(s) 1095
HinP1I GCGC 1 cut(s) 1095
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 3 cut(s) 75, 84, 663
HinfI GANTC 4 cut(s) 93, 134, 185, 1081
HpaII CCGG 3 cut(s) 117, 479, 1115
HphI GGTGA 6 cut(s) 47, 70, 88, 143, 722, 758
Hpy166II GTNNAC 3 cut(s) 103, 154, 232
Hpy188I TCNGA 2 cut(s) 92, 916
Hpy188III TCNNGA 9 cut(s) 12, 155, 189, 278, 330, 479, 536, 695, 907
Hpy8I GTNNAC 3 cut(s) 103, 154, 232
HpyAV CCTTC 4 cut(s) 444, 668, 697, 975
HpyCH4III ACNGT 6 cut(s) 19, 100, 109, 394, 427, 761
HpyCH4IV ACGT 3 cut(s) 218, 271, 1017
HpyCH4V TGCA 8 cut(s) 215, 299, 386, 422, 449, 515, 728, 990
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 296, 452, 1001
HpyF3I CTNAG 3 cut(s) 236, 915, 955
HpySE526I ACGT 3 cut(s) 218, 271, 1017
Hsp92II CATG 6 cut(s) 46, 365, 737, 884, 910, 1104
HspAI GCGC 1 cut(s) 1095
Kpn2I TCCGGA 1 cut(s) 478
Kzo9I GATC 5 cut(s) 332, 597, 712, 951, 1051
LmnI GCTCC 2 cut(s) 280, 584
Lsp1109I GCAGC 8 cut(s) 370, 392, 433, 527, 704, 946, 949, 1109
LweI GCATC 3 cut(s) 308, 673, 817
MaeI CTAG 3 cut(s) 809, 1043, 1085
MaeII ACGT 3 cut(s) 218, 271, 1017
MaeIII GTNAC 6 cut(s) 35, 131, 186, 194, 746, 1087
MalI GATC 5 cut(s) 334, 599, 714, 953, 1053
MboI GATC 5 cut(s) 332, 597, 712, 951, 1051
MboII GAAGA 3 cut(s) 59, 638, 712
MflI RGATCY 4 cut(s) 332, 597, 951, 1051
MhlI GDGCHC 2 cut(s) 277, 856
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 3 cut(s) 199, 539, 910
MluNI TGGCCA 1 cut(s) 168
MlyI GAGTC 2 cut(s) 128, 194
MmeI TCCRAC 1 cut(s) 409
Mox20I TGGCCA 1 cut(s) 168
MroI TCCGGA 1 cut(s) 478
MscI TGGCCA 1 cut(s) 168
MseI TTAA 5 cut(s) 23, 318, 788, 888, 897
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 3 cut(s) 117, 479, 1115
MspR9I CCNGG 7 cut(s) 117, 264, 287, 771, 843, 1107, 1115
Mva1269I GAATGC 1 cut(s) 1149
MvaI CCWGG 5 cut(s) 264, 287, 771, 843, 1107
MwoI GCNNNNNNNGC 4 cut(s) 83, 296, 452, 1001
NciI CCSGG 2 cut(s) 117, 1115
NcoI CCATGG 1 cut(s) 361
NdeI CATATG 1 cut(s) 523
NdeII GATC 5 cut(s) 332, 597, 712, 951, 1051
NlaIII CATG 6 cut(s) 46, 365, 737, 884, 910, 1104
NlaIV GGNNCC 2 cut(s) 66, 454
NmuCI GTSAC 5 cut(s) 35, 131, 186, 194, 746
NspI RCATGY 1 cut(s) 884
PaeR7I CTCGAG 2 cut(s) 10, 817
PagI TCATGA 1 cut(s) 906
PaqCI CACCTGC 1 cut(s) 440
PciI ACATGT 1 cut(s) 880
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 1149
PfeI GAWTC 2 cut(s) 93, 1081
PflFI GACNNNGTC 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 841
PkrI GCNGC 8 cut(s) 382, 385, 448, 517, 719, 961, 964, 1099
PleI GAGTC 2 cut(s) 128, 193
PpsI GAGTC 2 cut(s) 128, 193
PscI ACATGT 1 cut(s) 880
Psp1406I AACGTT 1 cut(s) 218
Psp6I CCWGG 5 cut(s) 262, 285, 769, 841, 1105
PspEI GGTNACC 1 cut(s) 746
PspGI CCWGG 5 cut(s) 262, 285, 769, 841, 1105
PspN4I GGNNCC 2 cut(s) 66, 454
PspPI GGNCC 1 cut(s) 431
PspXI VCTCGAGB 1 cut(s) 817
PstI CTGCAG 3 cut(s) 388, 451, 517
PsuI RGATCY 4 cut(s) 332, 597, 951, 1051
PsyI GACNNNGTC 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 2 cut(s) 412, 1023
RsaNI GTAC 2 cut(s) 411, 1022
SaqAI TTAA 5 cut(s) 23, 318, 788, 888, 897
SatI GCNGC 8 cut(s) 381, 384, 447, 516, 718, 960, 963, 1098
Sau3AI GATC 5 cut(s) 332, 597, 712, 951, 1051
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 2 cut(s) 128, 194
ScrFI CCNGG 7 cut(s) 117, 264, 287, 771, 843, 1107, 1115
SduI GDGCHC 2 cut(s) 277, 856
SfaNI GCATC 3 cut(s) 308, 673, 817
SfcI CTRYAG 3 cut(s) 384, 447, 513
Sfr274I CTCGAG 2 cut(s) 10, 817
SinI GGWCC 1 cut(s) 431
SlaI CTCGAG 2 cut(s) 10, 817
SmlI CTYRAG 4 cut(s) 10, 328, 817, 974
SmoI CTYRAG 4 cut(s) 10, 328, 817, 974
Sse9I AATT 3 cut(s) 199, 539, 910
SsiI CCGC 4 cut(s) 33, 147, 570, 686
SspMI CTAG 3 cut(s) 809, 1043, 1085
StyD4I CCNGG 7 cut(s) 115, 262, 285, 769, 841, 1105, 1113
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 6 cut(s) 19, 100, 109, 394, 427, 761
TaiI ACGT 3 cut(s) 221, 274, 1020
TaqI TCGA 5 cut(s) 11, 403, 465, 818, 1059
TasI AATT 3 cut(s) 199, 539, 910
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 2 cut(s) 93, 1081
Tru1I TTAA 5 cut(s) 23, 318, 788, 888, 897
Tru9I TTAA 5 cut(s) 23, 318, 788, 888, 897
TscAI CASTG 3 cut(s) 766, 997, 1078
TseFI GTSAC 5 cut(s) 35, 131, 186, 194, 746
TseI GCWGC 8 cut(s) 380, 383, 446, 515, 717, 959, 962, 1097
Tsp45I GTSAC 5 cut(s) 35, 131, 186, 194, 746
TspDTI ATGAA 5 cut(s) 240, 648, 895, 923, 1149
TspGWI ACGGA 2 cut(s) 57, 957
TspRI CASTG 3 cut(s) 766, 997, 1078
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 2 cut(s) 539, 910
XceI RCATGY 1 cut(s) 884
XhoI CTCGAG 2 cut(s) 10, 817
XspI CTAG 3 cut(s) 809, 1043, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.