Rorug03G0237500

protein DJ-1 homolog D-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
22100881 .. 22104752
3872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0237500.1

Sequence Viewer

Length: 1215 bp
ATGGAGGGAGGTTTGAAAACGAAACTGTTGCTAAGTGAAGGTGAAAAGCCCAACCAAAATGAGTTACTGCAAGACCGGAACACAGTTACTGCTCTCAGATGTGATTTCTTCTCCAACTTACCAGACAAAGTTCGGTCTGGCTTTGATCCCGAGGCCCCTTTTCATCTAAACCTCTCTAAAACTACTGGCTTGATAAAAGGGGAGAAGGAATACTATGAGAAACAATTTGCCACCTTAAGGTCTTTTGAGGAAGTTGACTCTCTAGAGTCACCCAATGTGATTGATGCTGAGCAAGATCGAAAAGAACAAGCCCAACATGAGAGAGCAATGAAAATTTCTAATTTGGCAAATGCCCTTCTGCTTGCTTTAAAGATATATGCTACACTGAAGAGTGGATCCTTAGCTATTGCAGCTTCAACTCTAGATTCTTTGCTAGATGTTATGGCTGGTGGTATACTTTGGTTCACACACTTGTCTATGAAAAACATAAATATCTACAAGTATCCTATCGGAAAGTTGAGAGTGCAACCAGTAGGCATTGTCATATTTGCAGCTGTCATGGCTACTCTTGGCTTTCAAGTTCTTGTCCTGGCCTTAAAACAACTTATCGAAGACACACCCTCCGAAAAGATGACTTCAGAAAAGTTGATCTGGTTGTATGCAATCATGCTGATAGCTGCTGGCGTCAAACTTGTTCTTTGGTGGTACTGTAGAAGCTCGGGAAACACAATCGTCCGTGCCTATGCCAAGGATCATTACTTTGATGTGGTCACAAATGTGGTTGGCTTGGTTGCTGCTGTTCTTGGAGACGAATTCTATTGGTGGATAGATCCAGTTGGTGCTATCATCCTCGCATTCTATACAATTTCTAATTGGTCCGGAACTGTCCTAGAAAATGCAGTCTCTTTGGTTGGACAATCAGCTCCACCTGAAGTCTTACAGAAACTCACATATCTCATCCTAAGGCACCACAGTTTAATCAGACATGTCGACACAGTCAGGGCCTACACCTTTGGGGTTCTCTATTTTGTCGAGGTTGACATTGACCTGCCCGAAGATTTGCCATTCAAAGAAGCACATGCAATTGGAGAATCATTGCAAATAAAGATCGAAGAGCTCCCTGAAGTCGAGCGGGCATTTGTTCATCTTGATTATGACTGTGATCACAAGCCAGAGCACTCTGTTCTAAGTAGGCTCCCCAACAGCCATCCTTGA

Protein Analysis

404

Amino Acids

45.37

Weight (kDa)

5.51

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 111 - 304 1.1e-27 Cation efflux transmembrane domain
ZT_dimer PF16916 309 - 384 4.9e-06 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1056
AccB1I GGYRCC 1 cut(s) 966
AccBSI CCGCTC 1 cut(s) 1132
AccI GTMKAC 2 cut(s) 454, 990
AccIII TCCGGA 1 cut(s) 878
AciI CCGC 1 cut(s) 1132
AclWI GGATC 5 cut(s) 140, 390, 403, 759, 824
AcsI RAATTY 2 cut(s) 333, 812
AcuI CTGAAG 4 cut(s) 407, 621, 951, 1143
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 1 cut(s) 237
AflII CTTAAG 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 985
AgsI TTSAA 4 cut(s) 16, 417, 578, 1069
AjnI CCWGG 1 cut(s) 588
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 7 cut(s) 404, 413, 554, 677, 717, 923, 1117
AluI AGCT 7 cut(s) 404, 413, 554, 677, 717, 923, 1117
Alw21I GWGCWC 2 cut(s) 1119, 1179
Alw26I GTCTC 2 cut(s) 801, 907
AlwI GGATC 5 cut(s) 140, 390, 403, 759, 824
AlwNI CAGNNNCTG 1 cut(s) 89
Ama87I CYCGRG 2 cut(s) 149, 718
Aor13HI TCCGGA 1 cut(s) 878
AoxI GGCC 3 cut(s) 153, 591, 1002
ApeKI GCWGC 4 cut(s) 410, 551, 677, 794
ApoI RAATTY 2 cut(s) 333, 812
AspS9I GGNCC 3 cut(s) 154, 876, 1002
AsuHPI GGTGA 2 cut(s) 53, 261
AvaI CYCGRG 2 cut(s) 149, 718
AvaII GGWCC 1 cut(s) 876
AxyI CCTNAGG 1 cut(s) 962
BamHI GGATCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 966
BanII GRGCYC 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 2 cut(s) 1119, 1179
BbvI GCAGC 4 cut(s) 422, 563, 664, 781
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 590
BciVI GTATCC 1 cut(s) 513
BclI TGATCA 1 cut(s) 1162
BcoDI GTCTC 2 cut(s) 801, 907
BfaI CTAG 4 cut(s) 263, 422, 434, 890
BfmI CTRYAG 1 cut(s) 709
BfrI CTTAAG 1 cut(s) 235
BfuAI ACCTGC 1 cut(s) 1056
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 4 cut(s) 411, 552, 678, 795
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 4 cut(s) 412, 553, 679, 796
Bme1390I CCNGG 1 cut(s) 590
Bme18I GGWCC 1 cut(s) 876
BmeT110I CYCGRG 2 cut(s) 149, 718
BmgT120I GGNCC 3 cut(s) 154, 876, 1002
BmiI GGNNCC 4 cut(s) 156, 397, 968, 1196
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 400
Bpu1102I GCTNAGC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 150, 747
BsaWI WCCGGW 2 cut(s) 75, 878
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 3 cut(s) 190, 530, 833
Bse21I CCTNAGG 1 cut(s) 962
Bse3DI GCAATG 2 cut(s) 333, 1094
BseAI TCCGGA 1 cut(s) 878
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 2 cut(s) 150, 747
BseGI GGATG 3 cut(s) 846, 957, 1207
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 2 cut(s) 333, 1094
BseMII CTCAG 2 cut(s) 109, 279
BseNI ACTGG 3 cut(s) 190, 530, 833
BseXI GCAGC 4 cut(s) 422, 563, 664, 781
BshFI GGCC 3 cut(s) 155, 593, 1004
BshNI GGYRCC 1 cut(s) 966
BsiHKAI GWGCWC 2 cut(s) 1119, 1179
BsiHKCI CYCGRG 2 cut(s) 149, 718
BsiSI CCGG 2 cut(s) 76, 879
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 2 cut(s) 801, 907
BsmBI CGTCTC 1 cut(s) 801
BsmI GAATGC 1 cut(s) 854
BsnI GGCC 3 cut(s) 155, 593, 1004
BsoBI CYCGRG 2 cut(s) 149, 718
Bsp1286I GDGCHC 2 cut(s) 1119, 1179
Bsp13I TCCGGA 1 cut(s) 878
Bsp143I GATC 8 cut(s) 145, 295, 395, 648, 751, 829, 1107, 1162
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 1 cut(s) 1132
BspANI GGCC 3 cut(s) 155, 593, 1004
BspCNI CTCAG 2 cut(s) 108, 280
BspEI TCCGGA 1 cut(s) 878
BspLI GGNNCC 4 cut(s) 156, 397, 968, 1196
BspMI ACCTGC 1 cut(s) 1056
BspPI GGATC 5 cut(s) 140, 390, 403, 759, 824
BspQI GCTCTTC 1 cut(s) 1107
BspT107I GGYRCC 1 cut(s) 966
BspTI CTTAAG 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 1132
BsrDI GCAATG 2 cut(s) 333, 1094
BsrI ACTGG 3 cut(s) 190, 530, 833
BssECI CCNNGG 2 cut(s) 150, 747
BssMI GATC 8 cut(s) 145, 295, 395, 648, 751, 829, 1107, 1162
BssNAI GTATAC 1 cut(s) 455
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 747
Bst1107I GTATAC 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 7 cut(s) 27, 85, 710, 886, 974, 997, 1160
Bst6I CTCTTC 2 cut(s) 383, 1107
BstACI GRCGYC 1 cut(s) 684
BstAFI CTTAAG 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 363, 682, 1134
BstDEI CTNAG 6 cut(s) 32, 95, 288, 400, 962, 1187
BstF5I GGATG 3 cut(s) 846, 957, 1207
BstKTI GATC 8 cut(s) 148, 298, 398, 651, 754, 832, 1110, 1165
BstMAI GTCTC 2 cut(s) 801, 907
BstMBI GATC 8 cut(s) 145, 295, 395, 648, 751, 829, 1107, 1162
BstMWI GCNNNNNNNGC 2 cut(s) 410, 560
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 2 cut(s) 989, 1082
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 1 cut(s) 709
BstV1I GCAGC 4 cut(s) 422, 563, 664, 781
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 395, 829
BstYI RGATCY 2 cut(s) 395, 829
BstZ17I GTATAC 1 cut(s) 455
Bsu36I CCTNAGG 1 cut(s) 962
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 3 cut(s) 155, 593, 1004
BtsCI GGATG 3 cut(s) 846, 957, 1207
BtsIMutI CAGTG 1 cut(s) 383
BveI ACCTGC 1 cut(s) 1056
Cac8I GCNNGC 3 cut(s) 363, 682, 1134
CaiI CAGNNNCTG 1 cut(s) 89
Cfr13I GGNCC 3 cut(s) 154, 876, 1002
CseI GACGC 1 cut(s) 673
Csp6I GTAC 1 cut(s) 706
CviAII CATG 5 cut(s) 317, 559, 667, 986, 1079
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 6 cut(s) 32, 95, 288, 400, 962, 1187
DpnI GATC 8 cut(s) 147, 297, 397, 650, 753, 831, 1109, 1164
DpnII GATC 8 cut(s) 145, 295, 395, 648, 751, 829, 1107, 1162
DraI TTTAAA 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 383, 1107
EarI CTCTTC 2 cut(s) 383, 1107
Ecl136II GAGCTC 1 cut(s) 1117
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 1119
Eco47I GGWCC 1 cut(s) 876
Eco53kI GAGCTC 1 cut(s) 1117
Eco57I CTGAAG 4 cut(s) 407, 621, 951, 1143
Eco81I CCTNAGG 1 cut(s) 962
Eco88I CYCGRG 2 cut(s) 149, 718
EcoICRI GAGCTC 1 cut(s) 1117
EcoO109I RGGNCCY 2 cut(s) 154, 1002
EcoRI GAATTC 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 588
EcoT14I CCWWGG 1 cut(s) 747
EcoT38I GRGCYC 1 cut(s) 1119
ErhI CCWWGG 1 cut(s) 747
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 5 cut(s) 320, 562, 670, 989, 1082
FatI CATG 5 cut(s) 316, 558, 666, 985, 1078
FauI CCCGC 1 cut(s) 1125
FbaI TGATCA 1 cut(s) 1162
FblI GTMKAC 2 cut(s) 454, 990
Fnu4HI GCNGC 4 cut(s) 411, 552, 678, 795
FokI GGATG 3 cut(s) 833, 944, 1194
FriOI GRGCYC 1 cut(s) 1119
Fsp4HI GCNGC 4 cut(s) 411, 552, 678, 795
FspBI CTAG 4 cut(s) 263, 422, 434, 890
GluI GCNGC 4 cut(s) 411, 552, 678, 795
HaeIII GGCC 3 cut(s) 155, 593, 1004
HapII CCGG 2 cut(s) 76, 879
HgaI GACGC 1 cut(s) 673
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 5 cut(s) 320, 562, 670, 989, 1082
HincII GTYRAC 3 cut(s) 256, 991, 1039
HindII GTYRAC 3 cut(s) 256, 991, 1039
HinfI GANTC 4 cut(s) 257, 266, 425, 1091
HpaII CCGG 2 cut(s) 76, 879
HphI GGTGA 2 cut(s) 53, 261
Hpy166II GTNNAC 5 cut(s) 256, 455, 465, 991, 1039
Hpy188I TCNGA 5 cut(s) 98, 512, 625, 640, 983
Hpy188III TCNNGA 6 cut(s) 149, 263, 422, 720, 879, 1148
Hpy8I GTNNAC 5 cut(s) 256, 455, 465, 991, 1039
HpyAV CCTTC 3 cut(s) 32, 199, 365
HpyCH4III ACNGT 7 cut(s) 27, 85, 710, 886, 974, 997, 1160
HpyCH4V TGCA 8 cut(s) 70, 410, 526, 551, 662, 899, 1082, 1099
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 560
HpyF3I CTNAG 6 cut(s) 32, 95, 288, 400, 962, 1187
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 5 cut(s) 320, 562, 670, 989, 1082
Kpn2I TCCGGA 1 cut(s) 878
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 8 cut(s) 145, 295, 395, 648, 751, 829, 1107, 1162
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 3 cut(s) 928, 1122, 1200
Lsp1109I GCAGC 4 cut(s) 422, 563, 664, 781
LweI GCATC 1 cut(s) 274
MaeI CTAG 4 cut(s) 263, 422, 434, 890
MaeIII GTNAC 4 cut(s) 63, 85, 267, 769
MalI GATC 8 cut(s) 147, 297, 397, 650, 753, 831, 1109, 1164
MbiI CCGCTC 1 cut(s) 1132
MboI GATC 8 cut(s) 145, 295, 395, 648, 751, 829, 1107, 1162
MboII GAAGA 5 cut(s) 100, 400, 623, 1067, 1124
MfeI CAATTG 1 cut(s) 1083
MflI RGATCY 2 cut(s) 395, 829
MhlI GDGCHC 2 cut(s) 1119, 1179
MluCI AATT 7 cut(s) 224, 333, 340, 812, 864, 871, 1083
MlyI GAGTC 2 cut(s) 251, 275
MmeI TCCRAC 2 cut(s) 138, 892
MnlI CCTC 6 cut(s) 145, 182, 241, 631, 860, 1027
MroI TCCGGA 1 cut(s) 878
MseI TTAA 4 cut(s) 236, 368, 596, 977
MslI CAYNNNNRTG 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 554
MspCI CTTAAG 1 cut(s) 235
MspI CCGG 2 cut(s) 76, 879
MspR9I CCNGG 1 cut(s) 590
MunI CAATTG 1 cut(s) 1083
Mva1269I GAATGC 1 cut(s) 854
MvaI CCWGG 1 cut(s) 590
MwoI GCNNNNNNNGC 2 cut(s) 410, 560
NdeII GATC 8 cut(s) 145, 295, 395, 648, 751, 829, 1107, 1162
NlaIII CATG 5 cut(s) 320, 562, 670, 989, 1082
NlaIV GGNNCC 4 cut(s) 156, 397, 968, 1196
NmuCI GTSAC 2 cut(s) 267, 769
NspI RCATGY 2 cut(s) 989, 1082
OliI CACNNNNGTG 1 cut(s) 776
PciI ACATGT 1 cut(s) 985
PciSI GCTCTTC 1 cut(s) 1107
PctI GAATGC 1 cut(s) 854
PfeI GAWTC 2 cut(s) 425, 1091
PflFI GACNNNGTC 1 cut(s) 995
PkrI GCNGC 4 cut(s) 412, 553, 679, 796
PleI GAGTC 2 cut(s) 251, 274
PpsI GAGTC 2 cut(s) 251, 274
PscI ACATGT 1 cut(s) 985
Psp124BI GAGCTC 1 cut(s) 1119
Psp6I CCWGG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 4 cut(s) 156, 397, 968, 1196
PspPI GGNCC 3 cut(s) 154, 876, 1002
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 2 cut(s) 395, 829
PsyI GACNNNGTC 1 cut(s) 995
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 1 cut(s) 1119
SalI GTCGAC 1 cut(s) 989
SapI GCTCTTC 1 cut(s) 1107
SaqAI TTAA 4 cut(s) 236, 368, 596, 977
SatI GCNGC 4 cut(s) 411, 552, 678, 795
Sau3AI GATC 8 cut(s) 145, 295, 395, 648, 751, 829, 1107, 1162
Sau96I GGNCC 3 cut(s) 154, 876, 1002
SchI GAGTC 2 cut(s) 251, 275
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 2 cut(s) 1119, 1179
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 709
SinI GGWCC 1 cut(s) 876
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 7 cut(s) 224, 333, 340, 812, 864, 871, 1083
SsiI CCGC 1 cut(s) 1132
SspMI CTAG 4 cut(s) 263, 422, 434, 890
SstI GAGCTC 1 cut(s) 1119
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 7 cut(s) 27, 85, 710, 886, 974, 997, 1160
TaqI TCGA 6 cut(s) 298, 609, 990, 1032, 1110, 1128
TaqII GACCGA 1 cut(s) 123
TasI AATT 7 cut(s) 224, 333, 340, 812, 864, 871, 1083
TfiI GAWTC 2 cut(s) 425, 1091
Tru1I TTAA 4 cut(s) 236, 368, 596, 977
Tru9I TTAA 4 cut(s) 236, 368, 596, 977
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 2 cut(s) 267, 769
TseI GCWGC 4 cut(s) 410, 551, 677, 794
Tsp45I GTSAC 2 cut(s) 267, 769
TspDTI ATGAA 4 cut(s) 152, 344, 494, 1133
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 1 cut(s) 390
Tth111I GACNNNGTC 1 cut(s) 995
Vha464I CTTAAG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 876
XapI RAATTY 2 cut(s) 333, 812
XbaI TCTAGA 2 cut(s) 262, 421
XceI RCATGY 2 cut(s) 989, 1082
XmiI GTMKAC 2 cut(s) 454, 990
XspI CTAG 4 cut(s) 263, 422, 434, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.