FvH4_1g27590

protein DJ-1 homolog D-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
19235389 .. 19241136
5748 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27590.t1

Sequence Viewer

Length: 1077 bp
ATGAAGCGCAGGGTGTTGATGCTGTGCGGCGACTTCATGGAAGACCAGGAGGCCATGGTTCCATTTCAAGCATTGCAGGGTTATGGGCTCGCCGTCGATGCCGTCTGTCCTGGAAAGAAAGCCGGCGACGTCTGCCGCACTTGTATTCACCAACTCTCTCCTACTCACCAGACATATTCTGAATCACGTGGTCATAATTTTACACTGAATGCAACATTCAATGATGTTGAAGCTGACAATTATGATGGATTAATAATCCCAGCTATTTGCCATGGGCAATTGGTCCTAGCAGCTGCTGGCTCAGTTAAAGGTCGGAAGTGCACAGCATATCCTGCTCTGGGACCTGTACTTGTTGCTGCAGGTGCTCACTGGGTGGAACCGGAGACCTTGGCAGCGTGTGTCGTTGATGGTAACATAATCACAGGGGCTACATATGAAGGCCATCCTGAGTTCATTAGGGCTTTTGTGAAGGCACTAGGAGGCAACACAACTGGTTCAGATAGAAGAGTCCTGTTTCTGTGTGGAGACTTCATGGAAGATTATGAGGTGGCTGTGCCTTTTCAGTCGCTTCAAGCTCTAGGGTGCCATGTCGATGGAGCTTGCCCCAATAAGAGATCTGGTGATATTTGCGCAACTGCTGTCCATGATTTTGAAGGTGATCAAACCTACAGTGAGAAGCCAGGACATAATTTCACTTTAACAGCTGATTTTGAAGCTATAGATGCCTCCAGTTATGATGCTCTTGTCATCCCTGGCGGTCGGGCACCAGAATATTTGGCATTAGATAAGAAAGTTATTGAACTAGTGAAACAATTTATGGAAGCCAAGAAACCAGTTGCATCCATCTGCCATGGGCAACAGATTCTAGCTGCTGCTGGTGTTCTACAGGGTAGGAATTGTACTGCATACCCAGCGGTGAAGCTTAATGTGATTTTATCAGGAGCCACATGGCTCGAACCTGATCCAATACACCGTTGCTTCACTGATGGGAATTTGGTGACTGGAGCAGCTTGGCCAGGCCACCCGGAGTTCATTTCTCAATTGATGGCATTGCTAGATGTTGGAGTTTCATTTTAG

Protein Analysis

359

Amino Acids

38.32

Weight (kDa)

5.24

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 3 - 87 5.7e-11 DJ-1/PfpI family
DJ-1_PfpI PF01965 88 - 157 8.4e-16 DJ-1/PfpI family
DJ-1_PfpI PF01965 168 - 350 3.6e-48 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
AatII GACGTC 1 cut(s) 132
Acc16I TGCGCA 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 582, 763
AciI CCGC 4 cut(s) 27, 136, 756, 914
AclWI GGATC 1 cut(s) 956
AcoI YGGCCR 1 cut(s) 1013
AcsI RAATTY 1 cut(s) 991
AcvI CACGTG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 2 cut(s) 348, 901
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 7 cut(s) 68, 220, 230, 572, 653, 713, 800
AhlI ACTAGT 1 cut(s) 802
AjnI CCWGG 5 cut(s) 45, 109, 679, 751, 1015
Alw21I GWGCWC 2 cut(s) 323, 367
Alw26I GTCTC 2 cut(s) 377, 519
Alw44I GTGCAC 1 cut(s) 319
AlwI GGATC 1 cut(s) 956
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 4 cut(s) 51, 439, 1013, 1018
ApaLI GTGCAC 1 cut(s) 319
ApeKI GCWGC 7 cut(s) 290, 293, 356, 392, 869, 872, 1007
ApoI RAATTY 1 cut(s) 991
AseI ATTAAT 1 cut(s) 251
AspLEI GCGC 2 cut(s) 9, 632
AspS9I GGNCC 2 cut(s) 283, 341
AsuC2I CCSGG 1 cut(s) 1025
AsuHPI GGTGA 6 cut(s) 140, 158, 632, 668, 928, 1009
AvaII GGWCC 2 cut(s) 283, 341
BaeGI GKGCMC 2 cut(s) 323, 766
BalI TGGCCA 1 cut(s) 1015
BanI GGYRCC 2 cut(s) 582, 763
BanII GRGCYC 1 cut(s) 90
BbrPI CACGTG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 323, 367
BbvI GCAGC 7 cut(s) 280, 302, 343, 404, 856, 859, 1019
BccI CCATC 7 cut(s) 239, 401, 450, 587, 851, 980, 1039
BceAI ACGGC 2 cut(s) 77, 86
BciT130I CCWGG 5 cut(s) 47, 111, 681, 753, 1017
BclI TGATCA 1 cut(s) 658
BcnI CCSGG 1 cut(s) 1025
BcoDI GTCTC 2 cut(s) 377, 519
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 6 cut(s) 287, 476, 578, 803, 866, 1055
BfmI CTRYAG 4 cut(s) 357, 667, 717, 884
BfuAI ACCTGC 1 cut(s) 350
BglII AGATCT 1 cut(s) 614
BisI GCNGC 9 cut(s) 28, 136, 291, 294, 357, 393, 870, 873, 1008
BlsI GCNGC 9 cut(s) 29, 137, 292, 295, 358, 394, 871, 874, 1009
Bme1390I CCNGG 6 cut(s) 47, 111, 681, 753, 1017, 1025
Bme18I GGWCC 2 cut(s) 283, 341
BmgT120I GGNCC 2 cut(s) 283, 341
BmiI GGNNCC 6 cut(s) 60, 342, 378, 584, 765, 943
BmrFI CCNGG 6 cut(s) 47, 111, 681, 753, 1017, 1025
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 5 cut(s) 9, 88, 712, 727, 848
BmuI ACTGGG 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 2 cut(s) 712, 1023
BpuMI CCSGG 1 cut(s) 1025
BsaAI YACGTR 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 5 cut(s) 54, 271, 387, 751, 850
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 5 cut(s) 374, 496, 729, 833, 1006
Bse3DI GCAATG 2 cut(s) 71, 1049
BseBI CCWGG 5 cut(s) 47, 111, 681, 753, 1017
BseDI CCNNGG 5 cut(s) 54, 271, 387, 751, 850
BseGI GGATG 3 cut(s) 442, 747, 839
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 2 cut(s) 71, 1049
BseMII CTCAG 2 cut(s) 315, 438
BseNI ACTGG 5 cut(s) 374, 496, 729, 833, 1006
BseSI GKGCMC 2 cut(s) 323, 766
BseXI GCAGC 7 cut(s) 280, 302, 343, 404, 856, 859, 1019
BseYI CCCAGC 2 cut(s) 259, 910
Bsh1285I CGRYCG 1 cut(s) 760
BshFI GGCC 4 cut(s) 53, 441, 1015, 1020
BshNI GGYRCC 2 cut(s) 582, 763
BsiEI CGRYCG 1 cut(s) 760
BsiHKAI GWGCWC 2 cut(s) 323, 367
BsiSI CCGG 3 cut(s) 123, 380, 1025
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 377, 519
BsmFI GGGAC 1 cut(s) 354
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 4 cut(s) 53, 441, 1015, 1020
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 4 cut(s) 90, 323, 367, 766
Bsp143I GATC 3 cut(s) 614, 658, 961
Bsp19I CCATGG 3 cut(s) 54, 271, 850
BspACI CCGC 4 cut(s) 27, 136, 756, 914
BspANI GGCC 4 cut(s) 53, 441, 1015, 1020
BspCNI CTCAG 2 cut(s) 314, 439
BspLI GGNNCC 6 cut(s) 60, 342, 378, 584, 765, 943
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 1 cut(s) 956
BspT107I GGYRCC 2 cut(s) 582, 763
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 71, 1049
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 5 cut(s) 374, 496, 729, 833, 1006
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 5 cut(s) 54, 271, 387, 751, 850
BssMI GATC 3 cut(s) 614, 658, 961
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 4 cut(s) 54, 271, 387, 850
Bst2UI CCWGG 5 cut(s) 47, 111, 681, 753, 1017
Bst4CI ACNGT 2 cut(s) 671, 974
Bst6I CTCTTC 1 cut(s) 499
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 332
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 4 cut(s) 90, 124, 298, 601
BstDEI CTNAG 2 cut(s) 301, 447
BstDSI CCRYGG 3 cut(s) 54, 271, 850
BstF5I GGATG 3 cut(s) 442, 747, 839
BstHHI GCGC 2 cut(s) 9, 632
BstKTI GATC 3 cut(s) 617, 661, 964
BstMAI GTCTC 2 cut(s) 377, 519
BstMBI GATC 3 cut(s) 614, 658, 961
BstMCI CGRYCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 6 cut(s) 98, 132, 332, 362, 722, 911
BstNI CCWGG 5 cut(s) 47, 111, 681, 753, 1017
BstSCI CCNGG 6 cut(s) 45, 109, 679, 751, 1015, 1023
BstSFI CTRYAG 4 cut(s) 357, 667, 717, 884
BstSLI GKGCMC 2 cut(s) 323, 766
BstV1I GCAGC 7 cut(s) 280, 302, 343, 404, 856, 859, 1019
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 614
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 614
BsuRI GGCC 4 cut(s) 53, 441, 1015, 1020
BtgI CCRYGG 3 cut(s) 54, 271, 850
BtsCI GGATG 3 cut(s) 442, 747, 839
BtsIMutI CAGTG 4 cut(s) 203, 367, 676, 981
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 4 cut(s) 90, 124, 298, 601
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 2 cut(s) 9, 632
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 283, 341
Csp6I GTAC 2 cut(s) 347, 900
CviAII CATG 8 cut(s) 37, 55, 272, 532, 587, 644, 851, 948
CviQI GTAC 2 cut(s) 347, 900
DdeI CTNAG 2 cut(s) 301, 447
DpnI GATC 3 cut(s) 616, 660, 963
DpnII GATC 3 cut(s) 614, 658, 961
DraIII CACNNNGTG 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 1013
Eam1104I CTCTTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 499
Eco130I CCWWGG 4 cut(s) 54, 271, 387, 850
Eco24I GRGCYC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 283, 341
Eco72I CACGTG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 341
EcoRII CCWGG 5 cut(s) 45, 109, 679, 751, 1015
EcoT14I CCWWGG 4 cut(s) 54, 271, 387, 850
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 4 cut(s) 54, 271, 387, 850
FaeI CATG 8 cut(s) 40, 58, 275, 535, 590, 647, 854, 951
FaqI GGGAC 1 cut(s) 354
FatI CATG 8 cut(s) 36, 54, 271, 531, 586, 643, 850, 947
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 658
Fnu4HI GCNGC 9 cut(s) 28, 136, 291, 294, 357, 393, 870, 873, 1008
FokI GGATG 3 cut(s) 429, 734, 826
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 9 cut(s) 28, 136, 291, 294, 357, 393, 870, 873, 1008
FspBI CTAG 6 cut(s) 287, 476, 578, 803, 866, 1055
FspI TGCGCA 1 cut(s) 631
GlaI GCGC 2 cut(s) 8, 631
GluI GCNGC 9 cut(s) 28, 136, 291, 294, 357, 393, 870, 873, 1008
GsaI CCCAGC 2 cut(s) 263, 914
GsuI CTGGAG 2 cut(s) 712, 1023
HaeIII GGCC 4 cut(s) 53, 441, 1015, 1020
HapII CCGG 3 cut(s) 123, 380, 1025
HhaI GCGC 2 cut(s) 9, 632
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 8 cut(s) 40, 58, 275, 535, 590, 647, 854, 951
Hin6I GCGC 2 cut(s) 7, 630
HinP1I GCGC 2 cut(s) 7, 630
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 3 cut(s) 182, 507, 862
HpaII CCGG 3 cut(s) 123, 380, 1025
HphI GGTGA 6 cut(s) 140, 158, 632, 668, 928, 1009
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 181, 315, 499
Hpy188III TCNNGA 2 cut(s) 446, 939
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 2 cut(s) 98, 131
HpyAV CCTTC 3 cut(s) 431, 463, 647
HpyCH4III ACNGT 2 cut(s) 671, 974
HpyCH4IV ACGT 2 cut(s) 129, 187
HpyCH4V TGCA 6 cut(s) 76, 212, 321, 359, 839, 905
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 132, 332, 362, 722, 911
HpyF3I CTNAG 2 cut(s) 301, 447
HpySE526I ACGT 2 cut(s) 129, 187
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 8 cut(s) 40, 58, 275, 535, 590, 647, 854, 951
HspAI GCGC 2 cut(s) 7, 630
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 3 cut(s) 614, 658, 961
LmnI GCTCC 3 cut(s) 596, 941, 1004
Lsp1109I GCAGC 7 cut(s) 280, 302, 343, 404, 856, 859, 1019
LweI GCATC 5 cut(s) 9, 88, 712, 727, 848
MaeI CTAG 6 cut(s) 287, 476, 578, 803, 866, 1055
MaeII ACGT 2 cut(s) 129, 187
MaeIII GTNAC 2 cut(s) 410, 997
MalI GATC 3 cut(s) 616, 660, 963
MboI GATC 3 cut(s) 614, 658, 961
MboII GAAGA 3 cut(s) 53, 516, 548
MfeI CAATTG 2 cut(s) 278, 1040
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 4 cut(s) 90, 323, 367, 766
MlsI TGGCCA 1 cut(s) 1015
MluCI AATT 8 cut(s) 196, 238, 278, 688, 812, 895, 991, 1040
MluNI TGGCCA 1 cut(s) 1015
MlyI GAGTC 1 cut(s) 516
MmeI TCCRAC 2 cut(s) 293, 1042
MnlI CCTC 4 cut(s) 43, 473, 538, 736
Mox20I TGGCCA 1 cut(s) 1015
MroNI GCCGGC 1 cut(s) 122
MscI TGGCCA 1 cut(s) 1015
MseI TTAA 4 cut(s) 251, 306, 698, 924
MslI CAYNNNNRTG 1 cut(s) 591
Msp20I TGGCCA 1 cut(s) 1015
MspA1I CMGCKG 3 cut(s) 293, 704, 914
MspI CCGG 3 cut(s) 123, 380, 1025
MspR9I CCNGG 6 cut(s) 47, 111, 681, 753, 1017, 1025
MunI CAATTG 2 cut(s) 278, 1040
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 5 cut(s) 47, 111, 681, 753, 1017
MwoI GCNNNNNNNGC 6 cut(s) 98, 132, 332, 362, 722, 911
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 1025
NcoI CCATGG 3 cut(s) 54, 271, 850
NdeI CATATG 1 cut(s) 433
NdeII GATC 3 cut(s) 614, 658, 961
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 8 cut(s) 40, 58, 275, 535, 590, 647, 854, 951
NlaIV GGNNCC 6 cut(s) 60, 342, 378, 584, 765, 943
NmuCI GTSAC 1 cut(s) 997
NsbI TGCGCA 1 cut(s) 631
PaqCI CACCTGC 1 cut(s) 350
PctI GAATGC 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 182, 862
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 9 cut(s) 29, 137, 292, 295, 358, 394, 871, 874, 1009
PleI GAGTC 1 cut(s) 515
PmaCI CACGTG 1 cut(s) 188
PmlI CACGTG 1 cut(s) 188
PpsI GAGTC 1 cut(s) 515
Ppu21I YACGTR 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 341
PshBI ATTAAT 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 341
Psp6I CCWGG 5 cut(s) 45, 109, 679, 751, 1015
PspCI CACGTG 1 cut(s) 188
PspFI CCCAGC 2 cut(s) 259, 910
PspGI CCWGG 5 cut(s) 45, 109, 679, 751, 1015
PspN4I GGNNCC 6 cut(s) 60, 342, 378, 584, 765, 943
PspPI GGNCC 2 cut(s) 283, 341
PspPPI RGGWCCY 1 cut(s) 341
PstI CTGCAG 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 614
PvuII CAGCTG 2 cut(s) 293, 704
RsaI GTAC 2 cut(s) 348, 901
RsaNI GTAC 2 cut(s) 347, 900
RseI CAYNNNNRTG 1 cut(s) 591
SaqAI TTAA 4 cut(s) 251, 306, 698, 924
SatI GCNGC 9 cut(s) 28, 136, 291, 294, 357, 393, 870, 873, 1008
Sau3AI GATC 3 cut(s) 614, 658, 961
Sau96I GGNCC 2 cut(s) 283, 341
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 6 cut(s) 47, 111, 681, 753, 1017, 1025
SduI GDGCHC 4 cut(s) 90, 323, 367, 766
SfaNI GCATC 5 cut(s) 9, 88, 712, 727, 848
SfcI CTRYAG 4 cut(s) 357, 667, 717, 884
SinI GGWCC 2 cut(s) 283, 341
SmiMI CAYNNNNRTG 1 cut(s) 591
SpeI ACTAGT 1 cut(s) 802
Sse9I AATT 8 cut(s) 196, 238, 278, 688, 812, 895, 991, 1040
SsiI CCGC 4 cut(s) 27, 136, 756, 914
SspI AATATT 1 cut(s) 773
SspMI CTAG 6 cut(s) 287, 476, 578, 803, 866, 1055
StyD4I CCNGG 6 cut(s) 45, 109, 679, 751, 1015, 1023
StyI CCWWGG 4 cut(s) 54, 271, 387, 850
TaaI ACNGT 2 cut(s) 671, 974
TaiI ACGT 2 cut(s) 132, 190
TaqI TCGA 3 cut(s) 96, 591, 954
TasI AATT 8 cut(s) 196, 238, 278, 688, 812, 895, 991, 1040
TatI WGTACW 2 cut(s) 346, 899
TauI GCSGC 2 cut(s) 30, 138
TfiI GAWTC 2 cut(s) 182, 862
Tru1I TTAA 4 cut(s) 251, 306, 698, 924
Tru9I TTAA 4 cut(s) 251, 306, 698, 924
TscAI CASTG 4 cut(s) 210, 374, 676, 988
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 7 cut(s) 290, 293, 356, 392, 869, 872, 1007
Tsp45I GTSAC 1 cut(s) 997
TspDTI ATGAA 7 cut(s) 17, 25, 442, 450, 520, 1021, 1059
TspRI CASTG 4 cut(s) 210, 374, 676, 988
VneI GTGCAC 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 283, 341
VspI ATTAAT 1 cut(s) 251
XapI RAATTY 1 cut(s) 991
XspI CTAG 6 cut(s) 287, 476, 578, 803, 866, 1055
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.