Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004141

Physical Location & Seq

Genomic Coordinates Reverse (-)

35150265 .. 35150459

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCAGGGAAGGAAATGTACTGCACACCCAACGGTCAGGATCAATGTAGTTTTGTCAGAAGCAAAATGGGTGGAACCTGATCCAATAGATAGTTCTATTACAGATGAAAATCTGGTAACTGGAGCTGTTTGGCTGGGCCATCCCGACTTCATTTTTCAGTTGATGGCATTGCTTGCTGTTCGAGTATCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

64

Amino Acids

7.12

Weight (kDa)

5.43

Isoelectric Point (pI)

18.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	2 - 56	2.2e-07	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02720
fragaria_vesca	FvH4_1g27590 FvH4_7g05680
malus_domestica	MD09G1281500.v1.1 MD09G1281600.v1.1
prunus_persica	Prupe.3G022000_v2.0.a1
pyrus_communis	pycom09g18920 pycom09g18960
rosa_chinensis	RchiOBHm_Chr3g0487821 RchiOBHm_Chr3g0487831 RchiOBHm_Chr3g0487891 RchiOBHm_Chr3g0487941 RchiOBHm_Chr3g0487981
rosa_laevigata	RLG00000022952 RLG00000022958 RLG00000022959 RLG00000022969
rosa_multiflora	Rmu_sc0004448.1_g000032
rosa_roxburghii	Rroxscaffold_3G00252270 Rroxscaffold_6G00394380 Rroxscaffold_6G00394420
rosa_rugosa	Rorug03G0237400 Rorug03G0237500 Rorug03G0237500
rosa_samantha	Rh3AG284900 Rh3AG285300 Rh3AG285600 Rh3BG321900 Rh3BG322300 Rh3CG320900 Rh3DG319100
rosa_wichuraiana	Rw0G004650 Rw3G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	47, 74
AfaI	GTAC	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
AlwI	GGATC	2 cut(s)	47, 74
AoxI	GGCC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	136
BarI	GAAGNNNNNNTAC	1 cut(s)	33
BccI	CCATC	2 cut(s)	147, 157
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	108
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	39, 79
BspANI	GGCC	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	47, 74
BsrDI	GCAATG	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	39, 79
Bst4CI	ACNGT	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	42, 82
BstMBI	GATC	2 cut(s)	39, 79
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviJI	RGCY	3 cut(s)	125, 133, 138
CviKI_1	RGCY	3 cut(s)	125, 133, 138
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	2 cut(s)	41, 81
DpnII	GATC	2 cut(s)	39, 79
FokI	GGATG	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	37, 143
HpyAV	CCTTC	1 cut(s)	3
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	4, 23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	39, 79
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	5 cut(s)	22, 90, 98, 105, 119
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	41, 81
MboI	GATC	2 cut(s)	39, 79
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	2 cut(s)	39, 79
NlaIV	GGNNCC	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	39, 79
Sau96I	GGNCC	1 cut(s)	136
SetI	ASST	2 cut(s)	79, 127
SgeI	CNNG	8 cut(s)	17, 49, 89, 125, 132, 146, 155, 185
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	181
TatI	WGTACW	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	120, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.