Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004141

Physical Location & Seq

Genomic Coordinates Reverse (-)

33589036 .. 33592635

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG284900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGATGCATCGGTTTTAGAATTGGTCAACAAGTTTGCCGCGTCCAGGAAGATAATTGCTGCTATGGGCCGTGGGGTATTGGTCTTAGCAGCTGCAGGCTTGGTTAAGGGGCGCAACTGCACAGGGTTCCCACCTATGAGACCTGTACTCCTTGCTGGGGGCGCTCAGTGGGTGGAACCTGATACCATGGGGACGTGTATCGCCGATGGTAATATAATTACTGGGGTATTGGTCTTAGCAGCTGCAGGCTTGGTTAAGGGGCGCAACTGCACAGGGTTCCCACCTATGAGACCTGTACTCCTTGCTGGGGGCGCTCAGTGGGTGGAACCTGATACCATGGGGACGTGTATCGCCGATGGTAATATAATTACTGGGGTTACATATGAAGGTAATGCTGAGTTCATGAGGCTTTTTGTCAAGGCATTGGGAGGACACATAATTAGTTCAGAGAGAAGGATCCTGTTTCTTTGTGGAGACTTCATGGAAGATTGTGAGACTTTTCAGTCACTTCTAGCACTTGGATGCCATGTTGATGCAGTTTGCCCCAAGAGGAAAGCTGGCGATGTATGTGCAACTGCAGTCCATGATTTTGAAGGTGACCAAACCTACAGTGAGAAGCCAGGCCATAATTTCATTTTGACAGCCAACTTTGAAACTATAGATGCCACAAGGTACGATGCTCTTGTAGTCCCTGGAGGTCGTGCCCCAGAGTATTTGGCATTGAATGAGAAGGTTATTGCATTAGTGAAACATTTTATGGGAGCAAGGAAACTAGTTGCATCCATTTGCCAGGGTCGGCAGATTTTAGCTGCTGCTGGTGTTCTGCAGGGATGGAAATGTACTGCACACCCAACGGTCAGGGTCAATGTAGTTTTGTCAGAAGTAAAATGGGTGGAACCTGATCCAATAGATAGTTCTATTACAGATGGAAATCTGGTAACTGGAGCTGTTTGGCTGGGCCATCCCGACTTCATTTCTCAGATGATGGCATTGCTTGCTGTTCGAGTATCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

338

Amino Acids

35.97

Weight (kDa)

6.17

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	3 - 75	4.6e-13	DJ-1/PfpI family
DJ-1_PfpI	PF01965	75 - 140	1.7e-09	DJ-1/PfpI family
DJ-1_PfpI	PF01965	151 - 330	1.5e-36	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02720
fragaria_vesca	FvH4_1g27590 FvH4_7g05680
malus_domestica	MD09G1281500.v1.1 MD09G1281600.v1.1
prunus_persica	Prupe.3G022000_v2.0.a1
pyrus_communis	pycom09g18920 pycom09g18960
rosa_chinensis	RchiOBHm_Chr3g0487821 RchiOBHm_Chr3g0487831 RchiOBHm_Chr3g0487891 RchiOBHm_Chr3g0487941 RchiOBHm_Chr3g0487981
rosa_laevigata	RLG00000022952 RLG00000022958 RLG00000022959 RLG00000022969
rosa_multiflora	Rmu_sc0004448.1_g000032
rosa_roxburghii	Rroxscaffold_3G00252270 Rroxscaffold_6G00394380 Rroxscaffold_6G00394420
rosa_rugosa	Rorug03G0237400 Rorug03G0237500 Rorug03G0237500
rosa_samantha	Rh3AG284900 Rh3AG285300 Rh3AG285600 Rh3BG321900 Rh3BG322300 Rh3CG320900 Rh3DG319100
rosa_wichuraiana	Rw0G004650 Rw3G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	502
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	3 cut(s)	451, 464, 896
AfaI	GTAC	4 cut(s)	147, 297, 674, 841
AfiI	CCNNNNNNNGG	3 cut(s)	45, 157, 307
AflIII	ACRYGT	2 cut(s)	194, 344
AgsI	TTSAA	3 cut(s)	593, 653, 724
AhlI	ACTAGT	1 cut(s)	772
AjiI	CACGTC	2 cut(s)	195, 345
AjnI	CCWGG	4 cut(s)	44, 619, 691, 789
AjuI	GAANNNNNNNTTGG	2 cut(s)	898, 930
AluBI	AGCT	5 cut(s)	92, 242, 557, 809, 947
AluI	AGCT	5 cut(s)	92, 242, 557, 809, 947
Alw26I	GTCTC	4 cut(s)	133, 283, 468, 488
AlwI	GGATC	3 cut(s)	451, 464, 896
AoxI	GGCC	3 cut(s)	67, 622, 958
ApeKI	GCWGC	7 cut(s)	59, 89, 92, 239, 242, 809, 812
AspLEI	GCGC	4 cut(s)	114, 164, 264, 314
AspS9I	GGNCC	2 cut(s)	67, 958
AsuHPI	GGTGA	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	706
BamHI	GGATCC	1 cut(s)	456
BbvI	GCAGC	7 cut(s)	46, 79, 101, 229, 251, 796, 799
BccI	CCATC	6 cut(s)	200, 350, 825, 920, 969, 979
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BciT130I	CCWGG	4 cut(s)	46, 621, 693, 791
BcoDI	GTCTC	4 cut(s)	133, 283, 468, 488
BcuI	ACTAGT	1 cut(s)	772
BfaI	CTAG	2 cut(s)	512, 773
BfmI	CTRYAG	6 cut(s)	93, 243, 576, 607, 657, 824
BfoI	RGCGCY	2 cut(s)	165, 315
BisI	GCNGC	8 cut(s)	39, 60, 90, 93, 240, 243, 810, 813
BlsI	GCNGC	8 cut(s)	40, 61, 91, 94, 241, 244, 811, 814
Bme1390I	CCNGG	4 cut(s)	46, 621, 693, 791
BmgBI	CACGTC	2 cut(s)	195, 345
BmgT120I	GGNCC	2 cut(s)	67, 958
BmiI	GGNNCC	6 cut(s)	128, 177, 278, 327, 458, 897
BmrFI	CCNGG	4 cut(s)	46, 621, 693, 791
BmrI	ACTGGG	2 cut(s)	231, 381
BmsI	GCATC	6 cut(s)	17, 512, 523, 652, 667, 788
BmuI	ACTGGG	2 cut(s)	231, 381
BpmI	CTGGAG	2 cut(s)	714, 963
BsaBI	GATNNNNATC	1 cut(s)	930
BsaI	GGTCTC	2 cut(s)	133, 283
BsaJI	CCNNGG	5 cut(s)	70, 186, 336, 691, 790
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 157, 307
Bse1I	ACTGG	3 cut(s)	226, 376, 946
Bse3DI	GCAATG	1 cut(s)	989
Bse8I	GATNNNNATC	1 cut(s)	930
BseBI	CCWGG	4 cut(s)	46, 621, 693, 791
BseDI	CCNNGG	5 cut(s)	70, 186, 336, 691, 790
BseGI	GGATG	5 cut(s)	10, 527, 779, 836, 961
BseJI	GATNNNNATC	1 cut(s)	930
BseLI	CCNNNNNNNGG	3 cut(s)	45, 157, 307
BseMI	GCAATG	1 cut(s)	989
BseMII	CTCAG	4 cut(s)	179, 329, 387, 992
BseNI	ACTGG	3 cut(s)	226, 376, 946
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	7 cut(s)	46, 79, 101, 229, 251, 796, 799
BseYI	CCCAGC	3 cut(s)	155, 305, 955
BsgI	GTGCAG	3 cut(s)	103, 253, 828
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	69, 624, 960
BslFI	GGGAC	3 cut(s)	205, 355, 674
BslI	CCNNNNNNNGG	3 cut(s)	45, 157, 307
BsmAI	GTCTC	4 cut(s)	133, 283, 468, 488
BsmFI	GGGAC	3 cut(s)	205, 355, 674
BsnI	GGCC	3 cut(s)	69, 624, 960
Bso31I	GGTCTC	2 cut(s)	133, 283
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	2 cut(s)	456, 901
Bsp19I	CCATGG	2 cut(s)	186, 336
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	3 cut(s)	69, 624, 960
BspCNI	CTCAG	4 cut(s)	178, 328, 388, 991
BspFNI	CGCG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	6 cut(s)	128, 177, 278, 327, 458, 897
BspMAI	CTGCAG	4 cut(s)	97, 247, 580, 828
BspPI	GGATC	3 cut(s)	451, 464, 896
BspTNI	GGTCTC	2 cut(s)	133, 283
BsrDI	GCAATG	1 cut(s)	989
BsrI	ACTGG	3 cut(s)	226, 376, 946
BssECI	CCNNGG	5 cut(s)	70, 186, 336, 691, 790
BssMI	GATC	2 cut(s)	456, 901
BssT1I	CCWWGG	2 cut(s)	186, 336
Bst2UI	CCWGG	4 cut(s)	46, 621, 693, 791
Bst4CI	ACNGT	2 cut(s)	611, 856
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstC8I	GCNNGC	4 cut(s)	97, 247, 559, 996
BstDEI	CTNAG	6 cut(s)	85, 165, 235, 315, 396, 978
BstDSI	CCRYGG	3 cut(s)	70, 186, 336
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	5 cut(s)	10, 527, 779, 836, 961
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	2 cut(s)	165, 315
BstHHI	GCGC	4 cut(s)	114, 164, 264, 314
BstKTI	GATC	2 cut(s)	459, 904
BstMAI	GTCTC	4 cut(s)	133, 283, 468, 488
BstMBI	GATC	2 cut(s)	456, 901
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 311, 995
BstNI	CCWGG	4 cut(s)	46, 621, 693, 791
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	4 cut(s)	44, 619, 691, 789
BstSFI	CTRYAG	6 cut(s)	93, 243, 576, 607, 657, 824
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	7 cut(s)	46, 79, 101, 229, 251, 796, 799
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	69, 624, 960
BtgI	CCRYGG	3 cut(s)	70, 186, 336
BtgZI	GCGATG	1 cut(s)	576
BtrI	CACGTC	2 cut(s)	195, 345
BtsCI	GGATG	5 cut(s)	10, 527, 779, 836, 961
BtsIMutI	CAGTG	3 cut(s)	173, 323, 616
Cac8I	GCNNGC	4 cut(s)	97, 247, 559, 996
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	4 cut(s)	114, 164, 264, 314
Cfr13I	GGNCC	2 cut(s)	67, 958
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	4 cut(s)	146, 296, 673, 840
CviAII	CATG	6 cut(s)	187, 337, 403, 481, 527, 584
CviQI	GTAC	4 cut(s)	146, 296, 673, 840
DdeI	CTNAG	6 cut(s)	85, 165, 235, 315, 396, 978
DpnI	GATC	2 cut(s)	458, 903
DpnII	GATC	2 cut(s)	456, 901
DrdI	GACNNNNNNGTC	1 cut(s)	502
DseDI	GACNNNNNNGTC	1 cut(s)	502
Eco130I	CCWWGG	2 cut(s)	186, 336
Eco31I	GGTCTC	2 cut(s)	133, 283
Eco91I	GGTNACC	1 cut(s)	596
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	4 cut(s)	44, 619, 691, 789
EcoT14I	CCWWGG	2 cut(s)	186, 336
EcoT22I	ATGCAT	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	186, 336
FaeI	CATG	6 cut(s)	190, 340, 406, 484, 530, 587
FaqI	GGGAC	3 cut(s)	205, 355, 674
FatI	CATG	6 cut(s)	186, 336, 402, 480, 526, 583
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	8 cut(s)	39, 60, 90, 93, 240, 243, 810, 813
FokI	GGATG	5 cut(s)	17, 534, 766, 843, 948
Fsp4HI	GCNGC	8 cut(s)	39, 60, 90, 93, 240, 243, 810, 813
FspBI	CTAG	2 cut(s)	512, 773
GlaI	GCGC	4 cut(s)	113, 163, 263, 313
GluI	GCNGC	8 cut(s)	39, 60, 90, 93, 240, 243, 810, 813
GsaI	CCCAGC	3 cut(s)	159, 309, 959
GsuI	CTGGAG	2 cut(s)	714, 963
HaeII	RGCGCY	2 cut(s)	165, 315
HaeIII	GGCC	3 cut(s)	69, 624, 960
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	4 cut(s)	114, 164, 264, 314
Hin1II	CATG	6 cut(s)	190, 340, 406, 484, 530, 587
Hin6I	GCGC	4 cut(s)	112, 162, 262, 312
HinP1I	GCGC	4 cut(s)	112, 162, 262, 312
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	448, 880, 981
Hpy188III	TCNNGA	2 cut(s)	403, 965
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	4 cut(s)	380, 447, 587, 724
HpyCH4III	ACNGT	2 cut(s)	611, 856
HpyCH4IV	ACGT	2 cut(s)	194, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 311, 995
HpyF3I	CTNAG	6 cut(s)	85, 165, 235, 315, 396, 978
HpySE526I	ACGT	2 cut(s)	194, 344
Hsp92II	CATG	6 cut(s)	190, 340, 406, 484, 530, 587
HspAI	GCGC	4 cut(s)	112, 162, 262, 312
Kzo9I	GATC	2 cut(s)	456, 901
LmnI	GCTCC	2 cut(s)	761, 944
Lsp1109I	GCAGC	7 cut(s)	46, 79, 101, 229, 251, 796, 799
LweI	GCATC	6 cut(s)	17, 512, 523, 652, 667, 788
MaeI	CTAG	2 cut(s)	512, 773
MaeII	ACGT	2 cut(s)	194, 344
MaeIII	GTNAC	4 cut(s)	376, 504, 596, 937
MalI	GATC	2 cut(s)	458, 903
MboI	GATC	2 cut(s)	456, 901
MboII	GAAGA	2 cut(s)	61, 497
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	6 cut(s)	20, 54, 216, 366, 438, 628
MnlI	CCTC	4 cut(s)	399, 422, 543, 689
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	2 cut(s)	105, 255
MslI	CAYNNNNRTG	2 cut(s)	520, 531
MspA1I	CMGCKG	2 cut(s)	92, 242
MspR9I	CCNGG	4 cut(s)	46, 621, 693, 791
MvaI	CCWGG	4 cut(s)	46, 621, 693, 791
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	161, 311, 995
NcoI	CCATGG	2 cut(s)	186, 336
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	2 cut(s)	456, 901
NlaIII	CATG	6 cut(s)	190, 340, 406, 484, 530, 587
NlaIV	GGNNCC	6 cut(s)	128, 177, 278, 327, 458, 897
NmuCI	GTSAC	2 cut(s)	504, 596
NsiI	ATGCAT	1 cut(s)	10
PagI	TCATGA	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	8 cut(s)	40, 61, 91, 94, 241, 244, 811, 814
Psp6I	CCWGG	4 cut(s)	44, 619, 691, 789
PspEI	GGTNACC	1 cut(s)	596
PspFI	CCCAGC	3 cut(s)	155, 305, 955
PspGI	CCWGG	4 cut(s)	44, 619, 691, 789
PspN4I	GGNNCC	6 cut(s)	128, 177, 278, 327, 458, 897
PspPI	GGNCC	2 cut(s)	67, 958
PstI	CTGCAG	4 cut(s)	97, 247, 580, 828
PsuI	RGATCY	1 cut(s)	456
PvuII	CAGCTG	2 cut(s)	92, 242
RsaI	GTAC	4 cut(s)	147, 297, 674, 841
RsaNI	GTAC	4 cut(s)	146, 296, 673, 840
RseI	CAYNNNNRTG	2 cut(s)	520, 531
SaqAI	TTAA	2 cut(s)	105, 255
SatI	GCNGC	8 cut(s)	39, 60, 90, 93, 240, 243, 810, 813
Sau3AI	GATC	2 cut(s)	456, 901
Sau96I	GGNCC	2 cut(s)	67, 958
ScrFI	CCNGG	4 cut(s)	46, 621, 693, 791
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	6 cut(s)	17, 512, 523, 652, 667, 788
SfcI	CTRYAG	6 cut(s)	93, 243, 576, 607, 657, 824
SmiMI	CAYNNNNRTG	2 cut(s)	520, 531
SpeI	ACTAGT	1 cut(s)	772
Sse9I	AATT	6 cut(s)	20, 54, 216, 366, 438, 628
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	512, 773
StyD4I	CCNGG	4 cut(s)	44, 619, 691, 789
StyI	CCWWGG	2 cut(s)	186, 336
TaaI	ACNGT	2 cut(s)	611, 856
TaiI	ACGT	2 cut(s)	197, 347
TaqI	TCGA	1 cut(s)	1003
TasI	AATT	6 cut(s)	20, 54, 216, 366, 438, 628
TatI	WGTACW	3 cut(s)	145, 295, 839
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	105, 255
Tru9I	TTAA	2 cut(s)	105, 255
TscAI	CASTG	3 cut(s)	173, 323, 616
TseFI	GTSAC	2 cut(s)	504, 596
TseI	GCWGC	7 cut(s)	59, 89, 92, 239, 242, 809, 812
Tsp45I	GTSAC	2 cut(s)	504, 596
TspDTI	ATGAA	5 cut(s)	391, 399, 469, 622, 961
TspRI	CASTG	3 cut(s)	173, 323, 616
XspI	CTAG	2 cut(s)	512, 773
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.