Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004141

Physical Location & Seq

Genomic Coordinates Forward (+)

1643165 .. 1647718

Gene Structure 4554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G022000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCGAAAGGTGAACGGAGGGTGTTGTTGGTGCTGGGGGACTACGTGGAAGACTACGAGGCGATGGTTCCATTTCAAGCACTGCAGGCATATGGAGTGTCCGTTGATGCTGTCTGTCCTGGCAAGAAAGCTGGTGATATCTGCCGCACAGCCATTCATCAACTTTTTCCTGCTCACCAGACTTATTCTGAATCACGTGGTCACAATTTTGCACTCAATGCAACATTTGATGACATTGAATTTAACAAATATGATGGATTAATAATACCCGGAGGACGGGCACCTGAATATCTTGCTTTGGATGCATCGGTTTTAGAATTGGTGAGAAAGTTTTCTGACTCCGGAAAGCCAATTGCTTCGATTTGCCATGGGCAACTTGTCCTAGCAGCTGCAGGCTCAGTTAAAGGTAGAAAGTGTACGGCCTTCCCAGCTGTCAGACCTGTACTTGTTGCTGCAGGTGCTTATTGGGTGGAACCCGAGACCATGTTGGCGTGTGTTGTTGATGGTAATATAATTACTGGGGCTACATATGAAGGCCATCCTGAGTTCATTAGGCTTTTTGTGAAGGCACTAGGTGGTAACATAACTGGTTCAGATAGGAGGATCCTGTTTCTCTGTGGGGACTTCATGGAAGATTATGAGGTAATTGTGCCTTTTCAGTCTCTTCAAGCTCTAGGATGCCATGTTGATGCAGTTTGCCCCAAGAAGAAAGCTGGTGAAATCTGTGCAACTGCTGTCCATGATTTTGAAGGTGACCAAACATACAGTGAGAAGCCGGGCCATAATTTCACTTTAACAGCTGACTTTGAAGCTCTAGATGTCTCAAGTTATGATGCTCTTGTAATCCCTGGAGGTCGAGCCCCAGAATATTTGGCATTGGATGAGAAAGTTATTGCATTAGTGAAGCAAATTGTGGAAGCCAGGAAACCAATTGCATCCATATGCCACGGGCAGCAGATTTTAGCTGCTGCTGGTGTTCTACAGGTGTTAGGAAGAGTTGGGAGTATCATCAATTTTTTAAGAGGGTTGATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

346

Amino Acids

37.19

Weight (kDa)

5.51

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02720
fragaria_vesca	FvH4_1g27590 FvH4_7g05680
malus_domestica	MD09G1281500.v1.1 MD09G1281600.v1.1
prunus_persica	Prupe.3G022000_v2.0.a1
pyrus_communis	pycom09g18920 pycom09g18960
rosa_chinensis	RchiOBHm_Chr3g0487821 RchiOBHm_Chr3g0487831 RchiOBHm_Chr3g0487891 RchiOBHm_Chr3g0487941 RchiOBHm_Chr3g0487981
rosa_laevigata	RLG00000022952 RLG00000022958 RLG00000022959 RLG00000022969
rosa_multiflora	Rmu_sc0004448.1_g000032
rosa_roxburghii	Rroxscaffold_3G00252270 Rroxscaffold_6G00394380 Rroxscaffold_6G00394420
rosa_rugosa	Rorug03G0237400 Rorug03G0237500 Rorug03G0237500
rosa_samantha	Rh3AG284900 Rh3AG285300 Rh3AG285600 Rh3BG321900 Rh3BG322300 Rh3CG320900 Rh3DG319100
rosa_wichuraiana	Rw0G004650 Rw3G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	341
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	2 cut(s)	598, 611
AcsI	RAATTY	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	575
AfaI	GTAC	2 cut(s)	418, 444
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	77, 239, 668, 749, 809
AjnI	CCWGG	3 cut(s)	118, 847, 920
AluBI	AGCT	8 cut(s)	131, 389, 431, 671, 713, 800, 812, 965
AluI	AGCT	8 cut(s)	131, 389, 431, 671, 713, 800, 812, 965
Alw26I	GTCTC	3 cut(s)	473, 666, 826
AlwI	GGATC	2 cut(s)	598, 611
Ama87I	CYCGRG	1 cut(s)	476
Aor13HI	TCCGGA	1 cut(s)	341
AoxI	GGCC	3 cut(s)	420, 535, 778
ApeKI	GCWGC	6 cut(s)	386, 389, 452, 952, 965, 968
ApoI	RAATTY	1 cut(s)	239
AseI	ATTAAT	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	778
AsuC2I	CCSGG	2 cut(s)	270, 777
AsuHPI	GGTGA	6 cut(s)	23, 146, 167, 334, 728, 764
AvaI	CYCGRG	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	862
BbrPI	CACGTG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	6 cut(s)	376, 398, 439, 952, 955, 964
BccI	CCATC	4 cut(s)	58, 248, 497, 546
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	3 cut(s)	120, 849, 922
BcnI	CCSGG	2 cut(s)	270, 777
BcoDI	GTCTC	3 cut(s)	473, 666, 826
BfaI	CTAG	4 cut(s)	383, 572, 674, 815
BfmI	CTRYAG	4 cut(s)	83, 390, 453, 980
BfuAI	ACCTGC	1 cut(s)	446
BisI	GCNGC	7 cut(s)	145, 387, 390, 453, 953, 966, 969
BlsI	GCNGC	7 cut(s)	146, 388, 391, 454, 954, 967, 970
Bme1390I	CCNGG	5 cut(s)	120, 270, 777, 849, 922
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	4 cut(s)	69, 282, 474, 605
BmrFI	CCNGG	5 cut(s)	120, 270, 777, 849, 922
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	7 cut(s)	97, 292, 314, 668, 679, 823, 944
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	808
BpuMI	CCSGG	2 cut(s)	270, 777
BsaAI	YACGTR	2 cut(s)	46, 197
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	367, 847, 946
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	523, 592
BseAI	TCCGGA	1 cut(s)	341
BseBI	CCWGG	3 cut(s)	120, 849, 922
BseDI	CCNNGG	3 cut(s)	367, 847, 946
BseGI	GGATG	5 cut(s)	307, 538, 683, 886, 935
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	411, 534
BseNI	ACTGG	2 cut(s)	523, 592
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	6 cut(s)	376, 398, 439, 952, 955, 964
BseYI	CCCAGC	2 cut(s)	34, 427
BshFI	GGCC	3 cut(s)	422, 537, 780
BshNI	GGYRCC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	3 cut(s)	270, 342, 776
BslFI	GGGAC	2 cut(s)	53, 635
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	3 cut(s)	473, 666, 826
BsmFI	GGGAC	2 cut(s)	53, 635
BsnI	GGCC	3 cut(s)	422, 537, 780
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	283, 862
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	603
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	3 cut(s)	422, 537, 780
BspCNI	CTCAG	2 cut(s)	410, 535
BspEI	TCCGGA	1 cut(s)	341
BspLI	GGNNCC	4 cut(s)	69, 282, 474, 605
BspMAI	CTGCAG	3 cut(s)	87, 394, 457
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	598, 611
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	523, 592
BssECI	CCNNGG	3 cut(s)	367, 847, 946
BssMI	GATC	1 cut(s)	603
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	3 cut(s)	120, 849, 922
Bst4CI	ACNGT	1 cut(s)	767
Bst6I	CTCTTC	2 cut(s)	669, 988
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstBAI	YACGTR	2 cut(s)	46, 197
BstC8I	GCNNGC	2 cut(s)	87, 394
BstDEI	CTNAG	2 cut(s)	397, 543
BstDSI	CCRYGG	2 cut(s)	367, 946
BstEII	GGTNACC	1 cut(s)	752
BstF5I	GGATG	5 cut(s)	307, 538, 683, 886, 935
BstKTI	GATC	1 cut(s)	606
BstMAI	GTCTC	3 cut(s)	473, 666, 826
BstMBI	GATC	1 cut(s)	603
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 218, 302, 428, 458
BstNI	CCWGG	3 cut(s)	120, 849, 922
BstPI	GGTNACC	1 cut(s)	752
BstSCI	CCNGG	5 cut(s)	118, 268, 775, 847, 920
BstSFI	CTRYAG	4 cut(s)	83, 390, 453, 980
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	6 cut(s)	376, 398, 439, 952, 955, 964
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	603
BstYI	RGATCY	1 cut(s)	603
BsuRI	GGCC	3 cut(s)	422, 537, 780
BtgI	CCRYGG	2 cut(s)	367, 946
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	5 cut(s)	307, 538, 683, 886, 935
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 772
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	2 cut(s)	87, 394
Cfr13I	GGNCC	1 cut(s)	778
Csp6I	GTAC	2 cut(s)	417, 443
CviAII	CATG	5 cut(s)	368, 484, 628, 683, 740
CviQI	GTAC	2 cut(s)	417, 443
DdeI	CTNAG	2 cut(s)	397, 543
DpnI	GATC	1 cut(s)	605
DpnII	GATC	1 cut(s)	603
DraIII	CACNNNGTG	1 cut(s)	575
Eam1104I	CTCTTC	2 cut(s)	669, 988
EarI	CTCTTC	2 cut(s)	669, 988
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	862
Eco31I	GGTCTC	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	139
Eco72I	CACGTG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	752
EcoO65I	GGTNACC	1 cut(s)	752
EcoRII	CCWGG	3 cut(s)	118, 847, 920
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	5 cut(s)	371, 487, 631, 686, 743
FaqI	GGGAC	2 cut(s)	53, 635
FatI	CATG	5 cut(s)	367, 483, 627, 682, 739
FauNDI	CATATG	3 cut(s)	91, 529, 941
Fnu4HI	GCNGC	7 cut(s)	145, 387, 390, 453, 953, 966, 969
FokI	GGATG	5 cut(s)	314, 525, 690, 893, 922
FriOI	GRGCYC	1 cut(s)	862
Fsp4HI	GCNGC	7 cut(s)	145, 387, 390, 453, 953, 966, 969
FspBI	CTAG	4 cut(s)	383, 572, 674, 815
GluI	GCNGC	7 cut(s)	145, 387, 390, 453, 953, 966, 969
GsaI	CCCAGC	2 cut(s)	38, 431
GsuI	CTGGAG	1 cut(s)	870
HaeIII	GGCC	3 cut(s)	422, 537, 780
HapII	CCGG	3 cut(s)	270, 342, 776
Hin1II	CATG	5 cut(s)	371, 487, 631, 686, 743
HinfI	GANTC	2 cut(s)	191, 338
HpaII	CCGG	3 cut(s)	270, 342, 776
HphI	GGTGA	6 cut(s)	23, 146, 167, 334, 728, 764
Hpy166II	GTNNAC	2 cut(s)	14, 417
Hpy188I	TCNGA	4 cut(s)	190, 337, 437, 595
Hpy188III	TCNNGA	3 cut(s)	342, 542, 815
Hpy8I	GTNNAC	2 cut(s)	14, 417
HpyAV	CCTTC	4 cut(s)	433, 527, 559, 743
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4IV	ACGT	2 cut(s)	45, 196
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 218, 302, 428, 458
HpyF3I	CTNAG	2 cut(s)	397, 543
HpySE526I	ACGT	2 cut(s)	45, 196
Hsp92II	CATG	5 cut(s)	371, 487, 631, 686, 743
Kpn2I	TCCGGA	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	603
Lsp1109I	GCAGC	6 cut(s)	376, 398, 439, 952, 955, 964
LweI	GCATC	7 cut(s)	97, 292, 314, 668, 679, 823, 944
MaeI	CTAG	4 cut(s)	383, 572, 674, 815
MaeII	ACGT	2 cut(s)	45, 196
MaeIII	GTNAC	3 cut(s)	200, 578, 752
MalI	GATC	1 cut(s)	605
MboI	GATC	1 cut(s)	603
MboII	GAAGA	5 cut(s)	62, 644, 656, 718, 1005
MfeI	CAATTG	2 cut(s)	351, 930
MflI	RGATCY	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	283, 862
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	7 cut(s)	12, 52, 266, 594, 634, 845, 1016
Mph1103I	ATGCAT	1 cut(s)	307
MroI	TCCGGA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	5 cut(s)	243, 260, 402, 794, 1019
MslI	CAYNNNNRTG	2 cut(s)	687, 940
MspA1I	CMGCKG	3 cut(s)	389, 431, 800
MspI	CCGG	3 cut(s)	270, 342, 776
MspR9I	CCNGG	5 cut(s)	120, 270, 777, 849, 922
MunI	CAATTG	2 cut(s)	351, 930
MvaI	CCWGG	3 cut(s)	120, 849, 922
MwoI	GCNNNNNNNGC	5 cut(s)	86, 218, 302, 428, 458
NciI	CCSGG	2 cut(s)	270, 777
NcoI	CCATGG	1 cut(s)	367
NdeI	CATATG	3 cut(s)	91, 529, 941
NdeII	GATC	1 cut(s)	603
NlaIII	CATG	5 cut(s)	371, 487, 631, 686, 743
NlaIV	GGNNCC	4 cut(s)	69, 282, 474, 605
NmuCI	GTSAC	2 cut(s)	200, 752
NsiI	ATGCAT	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	7 cut(s)	146, 388, 391, 454, 954, 967, 970
PleI	GAGTC	1 cut(s)	332
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	332
Ppu21I	YACGTR	2 cut(s)	46, 197
PshBI	ATTAAT	1 cut(s)	260
Psp6I	CCWGG	3 cut(s)	118, 847, 920
PspCI	CACGTG	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	752
PspFI	CCCAGC	2 cut(s)	34, 427
PspGI	CCWGG	3 cut(s)	118, 847, 920
PspN4I	GGNNCC	4 cut(s)	69, 282, 474, 605
PspPI	GGNCC	1 cut(s)	778
PstI	CTGCAG	3 cut(s)	87, 394, 457
PsuI	RGATCY	1 cut(s)	603
PvuII	CAGCTG	3 cut(s)	389, 431, 800
RsaI	GTAC	2 cut(s)	418, 444
RsaNI	GTAC	2 cut(s)	417, 443
RseI	CAYNNNNRTG	2 cut(s)	687, 940
SaqAI	TTAA	5 cut(s)	243, 260, 402, 794, 1019
SatI	GCNGC	7 cut(s)	145, 387, 390, 453, 953, 966, 969
Sau3AI	GATC	1 cut(s)	603
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	5 cut(s)	120, 270, 777, 849, 922
SduI	GDGCHC	2 cut(s)	283, 862
SfaNI	GCATC	7 cut(s)	97, 292, 314, 668, 679, 823, 944
SfcI	CTRYAG	4 cut(s)	83, 390, 453, 980
SmiMI	CAYNNNNRTG	2 cut(s)	687, 940
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
SsiI	CCGC	1 cut(s)	145
SspI	AATATT	1 cut(s)	869
SspMI	CTAG	4 cut(s)	383, 572, 674, 815
StyD4I	CCNGG	5 cut(s)	118, 268, 775, 847, 920
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	767
TaiI	ACGT	2 cut(s)	48, 199
TaqI	TCGA	2 cut(s)	359, 856
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	5 cut(s)	243, 260, 402, 794, 1019
Tru9I	TTAA	5 cut(s)	243, 260, 402, 794, 1019
TscAI	CASTG	2 cut(s)	87, 772
TseFI	GTSAC	2 cut(s)	200, 752
TseI	GCWGC	6 cut(s)	386, 389, 452, 952, 965, 968
Tsp45I	GTSAC	2 cut(s)	200, 752
TspDTI	ATGAA	4 cut(s)	146, 538, 546, 616
TspGWI	ACGGA	2 cut(s)	31, 91
TspRI	CASTG	2 cut(s)	87, 772
VspI	ATTAAT	1 cut(s)	260
XapI	RAATTY	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	4 cut(s)	383, 572, 674, 815
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.