pycom09g18960

protein DJ-1 homolog D-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
19742408 .. 19746760
4353 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18960.4

Sequence Viewer

Length: 1170 bp
ATGGCGAAGGAGCGCAGAGTGCTGATGGTATTGGGTGACTACGTCGAAGACTATGAGGCGATGGTCCCCTTTCAAGCTTTGCAGGCATTCGGAGTCTCCGTCGACGCCGTCTGTCCTGCCAAGAAATCCGGTGATATCTGCCGCACTGCCATTCATGAACTATCTCCTGCTCACCAGACTTATTCTGAATCACGGGGTCACAATTTTACACTCAATGCTTCATTTGATGACATTGAGTTTAACAAGTATGATGGATTAATAATACCAGGAGGACGGGCACCTGAATATCTAGCTTTGGATGCGTCAGTTGTAGAATTGGTGAAACAATTTGCTGACTCTGGAAAGCCAATTGCCTCTATTTGCCACGGGCAACTGATCCTAGCAGCGGCAGGCTTAGTTAAAGGTCGGAAGTGTACAGCGTTCCCTCCTGTCAAACCAGTACTCGTTGCTGCAGGTGCTTACTGGGTGGAGCCTGAGACCATGTCCGCTTGTGTTGTTGATGGTAATATAATTACCGGGGCCACATACGATGCCCACCCTGAGTTCATTAGGCTATTTGTTAAGGCATTGGGAGGAATCATAACTGGTTCAGATAGGAGGATCCTTTTTCTCTGTGGAGACTTTATGGAGGATTATGAGGTAACTGTGCCCTTTCAGTCCCTTCAAGCTCTTGGATGCCATGTTGATGCAGTTTGCCCGAAGAAGAAAGCTAGTGATATCTGTGCAACTGCTGTCCATGATTTTGAAGGTGACCAAACCTACAGTGAGAAACCGGGCCATAATTTTACTTTAACAGCTGATTTTGAAGCTCTAGACGTCTCAAGTTACGATGCGCTTGTAATCCCTGGAGGTCGAGCTCCTGAATATTTGGCATTGGATGAGAAAGTTATTGCATTAGTGAAGCAAATTTTTGAAGCCAGGAAACCAGTTGCGTCCATCTGCCATGGGCAGCAGATTTTAGCTGCTGCTGGTGTTCTGCAGGGAAAGAAATGTACTGCATACCCTGCGGTGAAGCTTAATGTGGTTCTTTCGGGAGGCACATGGCTGGAACCTGATCCAATAGATCGTTGCTTCACGGATGGAAATTTGGTTACTGGAGCAGCGTGGCCAGGCCACCCAGAGTTCATTTCTCAGTTGATGACATTACTTGGTGTTCAAGTATCATTCTAG

Protein Analysis

390

Amino Acids

41.87

Weight (kDa)

5.15

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 443
AatII GACGTC 1 cut(s) 819
Acc36I ACCTGC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 102
AciI CCGC 4 cut(s) 142, 386, 486, 1007
AclWI GGATC 4 cut(s) 370, 595, 608, 1049
AcoI YGGCCR 1 cut(s) 1106
AcsI RAATTY 2 cut(s) 906, 1084
AcyI GRCGYC 2 cut(s) 105, 816
AfaI GTAC 3 cut(s) 415, 441, 994
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 6 cut(s) 74, 665, 746, 806, 914, 1157
AjnI CCWGG 4 cut(s) 265, 844, 917, 1108
AluBI AGCT 9 cut(s) 77, 293, 668, 710, 797, 809, 857, 962, 1015
AluI AGCT 9 cut(s) 77, 293, 668, 710, 797, 809, 857, 962, 1015
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 4 cut(s) 100, 470, 612, 823
AlwI GGATC 4 cut(s) 370, 595, 608, 1049
AoxI GGCC 4 cut(s) 519, 775, 1106, 1111
ApeKI GCWGC 6 cut(s) 383, 449, 949, 962, 965, 1100
ApoI RAATTY 2 cut(s) 906, 1084
AseI ATTAAT 1 cut(s) 257
AspLEI GCGC 2 cut(s) 15, 835
AspS9I GGNCC 3 cut(s) 64, 519, 775
AsuC2I CCSGG 2 cut(s) 517, 774
AsuHPI GGTGA 6 cut(s) 47, 143, 164, 331, 761, 1021
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 2 cut(s) 280, 651
BalI TGGCCA 1 cut(s) 1108
BamHI GGATCC 1 cut(s) 600
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 6 cut(s) 395, 436, 949, 952, 961, 1112
BccI CCATC 6 cut(s) 19, 55, 245, 494, 944, 1073
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 4 cut(s) 267, 846, 919, 1110
BcnI CCSGG 2 cut(s) 517, 774
BcoDI GTCTC 4 cut(s) 100, 470, 612, 823
BfaI CTAG 5 cut(s) 290, 380, 711, 812, 1168
BfmI CTRYAG 3 cut(s) 450, 760, 977
BfuAI ACCTGC 1 cut(s) 443
BisI GCNGC 8 cut(s) 142, 384, 387, 450, 950, 963, 966, 1101
BlsI GCNGC 8 cut(s) 143, 385, 388, 451, 951, 964, 967, 1102
BmcAI AGTACT 1 cut(s) 441
Bme1390I CCNGG 6 cut(s) 267, 517, 774, 846, 919, 1110
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 3 cut(s) 64, 519, 775
BmiI GGNNCC 6 cut(s) 66, 279, 471, 520, 602, 1050
BmrFI CCNGG 6 cut(s) 267, 517, 774, 846, 919, 1110
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 5 cut(s) 289, 520, 665, 676, 820
BmuI ACTGGG 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 54
BpmI CTGGAG 2 cut(s) 867, 1116
BpuEI CTTGAG 1 cut(s) 805
BpuMI CCSGG 2 cut(s) 517, 774
BsaHI GRCGYC 2 cut(s) 105, 816
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 364, 516, 844, 943
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 5 cut(s) 437, 467, 589, 926, 1099
BseBI CCWGG 4 cut(s) 267, 846, 919, 1110
BseDI CCNNGG 4 cut(s) 364, 516, 844, 943
BseGI GGATG 4 cut(s) 304, 680, 883, 1084
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 3 cut(s) 465, 531, 1145
BseNI ACTGG 5 cut(s) 437, 467, 589, 926, 1099
BseSI GKGCMC 2 cut(s) 280, 651
BseXI GCAGC 6 cut(s) 395, 436, 949, 952, 961, 1112
BshFI GGCC 4 cut(s) 521, 777, 1108, 1113
BshNI GGYRCC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 859
BsiSI CCGG 3 cut(s) 129, 516, 773
BslFI GGGAC 2 cut(s) 50, 643
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 4 cut(s) 100, 470, 612, 823
BsmBI CGTCTC 1 cut(s) 823
BsmFI GGGAC 2 cut(s) 50, 643
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 4 cut(s) 521, 777, 1108, 1113
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 3 cut(s) 280, 651, 859
Bsp1407I TGTACA 1 cut(s) 413
Bsp143I GATC 4 cut(s) 375, 600, 1054, 1063
Bsp19I CCATGG 1 cut(s) 943
BspACI CCGC 4 cut(s) 142, 386, 486, 1007
BspANI GGCC 4 cut(s) 521, 777, 1108, 1113
BspCNI CTCAG 3 cut(s) 466, 532, 1144
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 6 cut(s) 66, 279, 471, 520, 602, 1050
BspMAI CTGCAG 2 cut(s) 454, 981
BspMI ACCTGC 1 cut(s) 443
BspPI GGATC 4 cut(s) 370, 595, 608, 1049
BspT107I GGYRCC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 470
BsrGI TGTACA 1 cut(s) 413
BsrI ACTGG 5 cut(s) 437, 467, 589, 926, 1099
BssECI CCNNGG 4 cut(s) 364, 516, 844, 943
BssMI GATC 4 cut(s) 375, 600, 1054, 1063
BssNI GRCGYC 2 cut(s) 105, 816
BssT1I CCWWGG 1 cut(s) 943
Bst2UI CCWGG 4 cut(s) 267, 846, 919, 1110
Bst4CI ACNGT 2 cut(s) 646, 764
BstACI GRCGYC 2 cut(s) 105, 816
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstAUI TGTACA 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 84, 391
BstDEI CTNAG 4 cut(s) 394, 474, 540, 1131
BstDSI CCRYGG 2 cut(s) 364, 943
BstEII GGTNACC 1 cut(s) 749
BstF5I GGATG 4 cut(s) 304, 680, 883, 1084
BstHHI GCGC 2 cut(s) 15, 835
BstKTI GATC 4 cut(s) 378, 603, 1057, 1066
BstMAI GTCTC 4 cut(s) 100, 470, 612, 823
BstMBI GATC 4 cut(s) 375, 600, 1054, 1063
BstMWI GCNNNNNNNGC 5 cut(s) 19, 83, 299, 455, 1004
BstNI CCWGG 4 cut(s) 267, 846, 919, 1110
BstPI GGTNACC 1 cut(s) 749
BstSCI CCNGG 6 cut(s) 265, 515, 772, 844, 917, 1108
BstSFI CTRYAG 3 cut(s) 450, 760, 977
BstSLI GKGCMC 2 cut(s) 280, 651
BstV1I GCAGC 6 cut(s) 395, 436, 949, 952, 961, 1112
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
BsuRI GGCC 4 cut(s) 521, 777, 1108, 1113
BtgI CCRYGG 2 cut(s) 364, 943
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 4 cut(s) 304, 680, 883, 1084
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 144, 769
BveI ACCTGC 1 cut(s) 443
Cac8I GCNNGC 2 cut(s) 84, 391
CciI TCATGA 1 cut(s) 154
CfoI GCGC 2 cut(s) 15, 835
Cfr13I GGNCC 3 cut(s) 64, 519, 775
CseI GACGC 3 cut(s) 113, 291, 921
Csp6I GTAC 3 cut(s) 414, 440, 993
CviAII CATG 6 cut(s) 155, 481, 680, 737, 944, 1041
CviQI GTAC 3 cut(s) 414, 440, 993
DdeI CTNAG 4 cut(s) 394, 474, 540, 1131
DpnI GATC 4 cut(s) 377, 602, 1056, 1065
DpnII GATC 4 cut(s) 375, 600, 1054, 1063
EaeI YGGCCR 1 cut(s) 1106
Ecl136II GAGCTC 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 859
Eco31I GGTCTC 1 cut(s) 470
Eco32I GATATC 2 cut(s) 136, 718
Eco47I GGWCC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 857
Eco91I GGTNACC 1 cut(s) 749
EcoICRI GAGCTC 1 cut(s) 857
EcoO65I GGTNACC 1 cut(s) 749
EcoRII CCWGG 4 cut(s) 265, 844, 917, 1108
EcoRV GATATC 2 cut(s) 136, 718
EcoT14I CCWWGG 1 cut(s) 943
EcoT38I GRGCYC 1 cut(s) 859
ErhI CCWWGG 1 cut(s) 943
Esp3I CGTCTC 1 cut(s) 823
FaeI CATG 6 cut(s) 158, 484, 683, 740, 947, 1044
FaqI GGGAC 2 cut(s) 50, 643
FatI CATG 6 cut(s) 154, 480, 679, 736, 943, 1040
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 8 cut(s) 142, 384, 387, 450, 950, 963, 966, 1101
FokI GGATG 4 cut(s) 311, 687, 890, 1091
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 8 cut(s) 142, 384, 387, 450, 950, 963, 966, 1101
FspBI CTAG 5 cut(s) 290, 380, 711, 812, 1168
GlaI GCGC 2 cut(s) 14, 834
GluI GCNGC 8 cut(s) 142, 384, 387, 450, 950, 963, 966, 1101
GsuI CTGGAG 2 cut(s) 867, 1116
HaeIII GGCC 4 cut(s) 521, 777, 1108, 1113
HapII CCGG 3 cut(s) 129, 516, 773
HgaI GACGC 3 cut(s) 113, 291, 921
HhaI GCGC 2 cut(s) 15, 835
Hin1I GRCGYC 2 cut(s) 105, 816
Hin1II CATG 6 cut(s) 158, 484, 683, 740, 947, 1044
Hin6I GCGC 2 cut(s) 13, 833
HinP1I GCGC 2 cut(s) 13, 833
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 75, 1013
HinfI GANTC 4 cut(s) 93, 188, 335, 576
HpaII CCGG 3 cut(s) 129, 516, 773
HphI GGTGA 6 cut(s) 47, 143, 164, 331, 761, 1021
Hpy166II GTNNAC 2 cut(s) 103, 414
Hpy188I TCNGA 4 cut(s) 92, 187, 408, 592
Hpy188III TCNNGA 5 cut(s) 155, 339, 812, 860, 1032
Hpy8I GTNNAC 2 cut(s) 103, 414
Hpy99I CGWCG 3 cut(s) 47, 104, 107
HpyAV CCTTC 2 cut(s) 671, 740
HpyCH4III ACNGT 2 cut(s) 646, 764
HpyCH4IV ACGT 2 cut(s) 42, 816
HpyCH4V TGCA 7 cut(s) 82, 452, 689, 725, 893, 979, 998
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 83, 299, 455, 1004
HpyF3I CTNAG 4 cut(s) 394, 474, 540, 1131
HpySE526I ACGT 2 cut(s) 42, 816
Hsp92I GRCGYC 2 cut(s) 105, 816
Hsp92II CATG 6 cut(s) 158, 484, 683, 740, 947, 1044
HspAI GCGC 2 cut(s) 13, 833
Kzo9I GATC 4 cut(s) 375, 600, 1054, 1063
LmnI GCTCC 4 cut(s) 10, 469, 862, 1097
Lsp1109I GCAGC 6 cut(s) 395, 436, 949, 952, 961, 1112
LweI GCATC 5 cut(s) 289, 520, 665, 676, 820
MaeI CTAG 5 cut(s) 290, 380, 711, 812, 1168
MaeII ACGT 2 cut(s) 42, 816
MaeIII GTNAC 6 cut(s) 35, 197, 640, 749, 824, 1090
MalI GATC 4 cut(s) 377, 602, 1056, 1065
MboI GATC 4 cut(s) 375, 600, 1054, 1063
MboII GAAGA 3 cut(s) 59, 712, 715
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 3 cut(s) 280, 651, 859
MlsI TGGCCA 1 cut(s) 1108
MluCI AATT 8 cut(s) 202, 314, 326, 348, 510, 781, 906, 1084
MluNI TGGCCA 1 cut(s) 1108
MlyI GAGTC 2 cut(s) 102, 329
MmeI TCCRAC 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 1108
MscI TGGCCA 1 cut(s) 1108
MseI TTAA 6 cut(s) 240, 257, 399, 561, 791, 1017
MslI CAYNNNNRTG 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 1108
MspA1I CMGCKG 2 cut(s) 386, 797
MspI CCGG 3 cut(s) 129, 516, 773
MspR9I CCNGG 6 cut(s) 267, 517, 774, 846, 919, 1110
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 4 cut(s) 267, 846, 919, 1110
MwoI GCNNNNNNNGC 5 cut(s) 19, 83, 299, 455, 1004
NciI CCSGG 2 cut(s) 517, 774
NcoI CCATGG 1 cut(s) 943
NdeII GATC 4 cut(s) 375, 600, 1054, 1063
NlaIII CATG 6 cut(s) 158, 484, 683, 740, 947, 1044
NlaIV GGNNCC 6 cut(s) 66, 279, 471, 520, 602, 1050
NmuCI GTSAC 3 cut(s) 35, 197, 749
PagI TCATGA 1 cut(s) 154
PaqCI CACCTGC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 188, 576
PflFI GACNNNGTC 3 cut(s) 41, 107, 481
PkrI GCNGC 8 cut(s) 143, 385, 388, 451, 951, 964, 967, 1102
PleI GAGTC 2 cut(s) 101, 329
PpsI GAGTC 2 cut(s) 101, 329
PshBI ATTAAT 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 859
Psp6I CCWGG 4 cut(s) 265, 844, 917, 1108
PspEI GGTNACC 1 cut(s) 749
PspGI CCWGG 4 cut(s) 265, 844, 917, 1108
PspN4I GGNNCC 6 cut(s) 66, 279, 471, 520, 602, 1050
PspPI GGNCC 3 cut(s) 64, 519, 775
PstI CTGCAG 2 cut(s) 454, 981
PsuI RGATCY 1 cut(s) 600
PsyI GACNNNGTC 3 cut(s) 41, 107, 481
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 3 cut(s) 415, 441, 994
RsaNI GTAC 3 cut(s) 414, 440, 993
RseI CAYNNNNRTG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 859
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 6 cut(s) 240, 257, 399, 561, 791, 1017
SatI GCNGC 8 cut(s) 142, 384, 387, 450, 950, 963, 966, 1101
Sau3AI GATC 4 cut(s) 375, 600, 1054, 1063
Sau96I GGNCC 3 cut(s) 64, 519, 775
ScaI AGTACT 1 cut(s) 441
SchI GAGTC 2 cut(s) 102, 329
ScrFI CCNGG 6 cut(s) 267, 517, 774, 846, 919, 1110
SduI GDGCHC 3 cut(s) 280, 651, 859
SfaNI GCATC 5 cut(s) 289, 520, 665, 676, 820
SfcI CTRYAG 3 cut(s) 450, 760, 977
SgrDI CGTCGACG 1 cut(s) 101
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
Sse9I AATT 8 cut(s) 202, 314, 326, 348, 510, 781, 906, 1084
SsiI CCGC 4 cut(s) 142, 386, 486, 1007
SspI AATATT 1 cut(s) 866
SspMI CTAG 5 cut(s) 290, 380, 711, 812, 1168
SstI GAGCTC 1 cut(s) 859
StyD4I CCNGG 6 cut(s) 265, 515, 772, 844, 917, 1108
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 2 cut(s) 646, 764
TaiI ACGT 2 cut(s) 45, 819
TaqI TCGA 3 cut(s) 45, 102, 853
TasI AATT 8 cut(s) 202, 314, 326, 348, 510, 781, 906, 1084
TatI WGTACW 3 cut(s) 413, 439, 992
TauI GCSGC 2 cut(s) 144, 389
TfiI GAWTC 2 cut(s) 188, 576
Tru1I TTAA 6 cut(s) 240, 257, 399, 561, 791, 1017
Tru9I TTAA 6 cut(s) 240, 257, 399, 561, 791, 1017
TscAI CASTG 2 cut(s) 151, 769
TseFI GTSAC 3 cut(s) 35, 197, 749
TseI GCWGC 6 cut(s) 383, 449, 949, 962, 965, 1100
Tsp45I GTSAC 3 cut(s) 35, 197, 749
TspDTI ATGAA 5 cut(s) 143, 171, 210, 535, 1114
TspGWI ACGGA 2 cut(s) 88, 1091
TspRI CASTG 2 cut(s) 151, 769
Tth111I GACNNNGTC 3 cut(s) 41, 107, 481
VpaK11BI GGWCC 1 cut(s) 64
VspI ATTAAT 1 cut(s) 257
XapI RAATTY 2 cut(s) 906, 1084
XbaI TCTAGA 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 5 cut(s) 290, 380, 711, 812, 1168
ZraI GACGTC 1 cut(s) 817
ZrmI AGTACT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.