Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004141

Physical Location & Seq

Genomic Coordinates Forward (+)

15866596 .. 15868770

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATCTGTACATATTCCCAATCACGTGGTCATAATTTTACACTCAATGCAACATTCAATGACGTTGAAGCTGACAATTATGATGGATTAATAATCCCAGGAGGGCGGGCTCCTGAATATCTTGCTGTTGATGCATCAGTTGTAGATTTGGCGAAAAAATTTACAGACTCCACAAAGGCAATTGCAGCTATTTGCCATGGCCAATTGGTCCTAGCAGCTGCTGGCTCAGTTAAAGGTCGGAAGTGCACAGCTTATCCTTCTTTGGGACCTGTACTTGTTGCTGCAGGTGCTAACTGGGTGGAACCAGAGACCATGGCTGCGTGTGTTGTTGATGGTAACATAATCACAGGAGCTACATATAAAGGCCATCCCGAGTTCATTAGTGCTTTTGTGAAGGCACTAGGAGGCAACATAACTGGTTCAGATAGAAGAGTCCTGTTTCTCTGTGGAGACTTCATGGAAGATTATGAGGTAGCTGTGCCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

163

Amino Acids

17.08

Weight (kDa)

5.05

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	5 - 132	4.2e-37	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02720
fragaria_vesca	FvH4_1g27590 FvH4_7g05680
malus_domestica	MD09G1281500.v1.1 MD09G1281600.v1.1
prunus_persica	Prupe.3G022000_v2.0.a1
pyrus_communis	pycom09g18920 pycom09g18960
rosa_chinensis	RchiOBHm_Chr3g0487821 RchiOBHm_Chr3g0487831 RchiOBHm_Chr3g0487891 RchiOBHm_Chr3g0487941 RchiOBHm_Chr3g0487981
rosa_laevigata	RLG00000022952 RLG00000022958 RLG00000022959 RLG00000022969
rosa_multiflora	Rmu_sc0004448.1_g000032
rosa_roxburghii	Rroxscaffold_3G00252270 Rroxscaffold_6G00394380 Rroxscaffold_6G00394420
rosa_rugosa	Rorug03G0237400 Rorug03G0237500 Rorug03G0237500
rosa_samantha	Rh3AG284900 Rh3AG285300 Rh3AG285600 Rh3BG321900 Rh3BG322300 Rh3CG320900 Rh3DG319100
rosa_wichuraiana	Rw0G004650 Rw3G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	275
AciI	CCGC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	10, 273
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	58, 68
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	6 cut(s)	71, 188, 218, 251, 353, 476
AluI	AGCT	6 cut(s)	71, 188, 218, 251, 353, 476
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	302, 444
Alw44I	GTGCAC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	199, 364
ApaLI	GTGCAC	1 cut(s)	244
ApeKI	GCWGC	5 cut(s)	185, 215, 218, 281, 317
ApoI	RAATTY	1 cut(s)	158
AseI	ATTAAT	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	208, 266
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	208, 266
BaeGI	GKGCMC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	112
BbrPI	CACGTG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	5 cut(s)	197, 205, 227, 268, 304
BccI	CCATC	3 cut(s)	77, 326, 375
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	302, 444
BfaI	CTAG	2 cut(s)	212, 401
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	275
BisI	GCNGC	5 cut(s)	186, 216, 219, 282, 318
BlsI	GCNGC	5 cut(s)	187, 217, 220, 283, 319
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	2 cut(s)	208, 266
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	208, 266
BmiI	GGNNCC	3 cut(s)	111, 267, 303
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	2 cut(s)	121, 143
BmuI	ACTGGG	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	97, 196, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	299, 421
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	97, 196, 312
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	299, 421
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	5 cut(s)	197, 205, 227, 268, 304
BshFI	GGCC	2 cut(s)	201, 366
BsiHKAI	GWGCWC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	302, 444
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	201, 366
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	112, 248
Bsp1407I	TGTACA	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	2 cut(s)	196, 312
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	201, 366
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	3 cut(s)	111, 267, 303
BspMAI	CTGCAG	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	299, 421
BssECI	CCNNGG	3 cut(s)	97, 196, 312
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	2 cut(s)	196, 312
Bst2UI	CCWGG	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	108, 223
BstDEI	CTNAG	1 cut(s)	226
BstDSI	CCRYGG	2 cut(s)	196, 312
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	302, 444
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 185, 287
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	5 cut(s)	197, 205, 227, 268, 304
BstXI	CCANNNNNNTGG	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	201, 366
BtgI	CCRYGG	2 cut(s)	196, 312
BtsCI	GGATG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	108, 223
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	208, 266
Csp6I	GTAC	2 cut(s)	9, 272
CviAII	CATG	3 cut(s)	197, 313, 457
CviQI	GTAC	2 cut(s)	9, 272
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	196, 312
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	208, 266
Eco72I	CACGTG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	196, 312
EcoT22I	ATGCAT	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	196, 312
FaeI	CATG	3 cut(s)	200, 316, 460
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	3 cut(s)	196, 312, 456
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	186, 216, 219, 282, 318
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	5 cut(s)	186, 216, 219, 282, 318
FspBI	CTAG	2 cut(s)	212, 401
GluI	GCNGC	5 cut(s)	186, 216, 219, 282, 318
HaeIII	GGCC	2 cut(s)	201, 366
Hin1II	CATG	3 cut(s)	200, 316, 460
HinfI	GANTC	2 cut(s)	167, 432
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	240, 424
Hpy188III	TCNNGA	2 cut(s)	113, 371
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	267, 388
HpyCH4IV	ACGT	2 cut(s)	25, 63
HpyCH4V	TGCA	5 cut(s)	50, 134, 185, 246, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 185, 287
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	2 cut(s)	25, 63
Hsp92II	CATG	3 cut(s)	200, 316, 460
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	115, 350
Lsp1109I	GCAGC	5 cut(s)	197, 205, 227, 268, 304
LweI	GCATC	2 cut(s)	121, 143
MaeI	CTAG	2 cut(s)	212, 401
MaeII	ACGT	2 cut(s)	25, 63
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	441, 473
MfeI	CAATTG	2 cut(s)	180, 203
MhlI	GDGCHC	2 cut(s)	112, 248
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	5 cut(s)	34, 76, 158, 180, 203
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	161, 441
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	3 cut(s)	95, 398, 463
Mox20I	TGGCCA	1 cut(s)	201
Mph1103I	ATGCAT	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	89, 231
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	2 cut(s)	180, 203
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	131, 185, 287
NcoI	CCATGG	2 cut(s)	196, 312
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	3 cut(s)	200, 316, 460
NlaIV	GGNNCC	3 cut(s)	111, 267, 303
NsiI	ATGCAT	1 cut(s)	136
PaqCI	CACCTGC	1 cut(s)	275
PkrI	GCNGC	5 cut(s)	187, 217, 220, 283, 319
PleI	GAGTC	2 cut(s)	161, 440
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
PpsI	GAGTC	2 cut(s)	161, 440
Ppu21I	YACGTR	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	97
PspCI	CACGTG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	111, 267, 303
PspPI	GGNCC	2 cut(s)	208, 266
PspPPI	RGGWCCY	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	10, 273
RsaNI	GTAC	2 cut(s)	9, 272
SaqAI	TTAA	2 cut(s)	89, 231
SatI	GCNGC	5 cut(s)	186, 216, 219, 282, 318
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	208, 266
SchI	GAGTC	2 cut(s)	161, 441
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	112, 248
SfaNI	GCATC	2 cut(s)	121, 143
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	208, 266
Sse9I	AATT	5 cut(s)	34, 76, 158, 180, 203
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	212, 401
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	2 cut(s)	196, 312
TaiI	ACGT	2 cut(s)	28, 66
TasI	AATT	5 cut(s)	34, 76, 158, 180, 203
TatI	WGTACW	2 cut(s)	8, 271
Tru1I	TTAA	2 cut(s)	89, 231
Tru9I	TTAA	2 cut(s)	89, 231
TseI	GCWGC	5 cut(s)	185, 215, 218, 281, 317
TspDTI	ATGAA	2 cut(s)	367, 445
VneI	GTGCAC	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	208, 266
VspI	ATTAAT	1 cut(s)	89
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	2 cut(s)	212, 401
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.