Rroxscaffold_6G00394420

protein DJ-1 homolog D-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
14941280 .. 14944922
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394420.1

Sequence Viewer

Length: 1080 bp
ATGCAATTAAAGATGATATCTCCTTATGAAACACGGGATGAGCAACACTATAACCCAAATCCGTGCAATCTCATTTTTGGGCCGCAGACATATTCCCAATCACGTGGTCATAATTTTACACTCAATGCAACATTCAATAACGTTGAAGCTGACAATTATGATGGATTAATAATCCCAGGAGGGCGAGCTCCTGAATATCTTGCTGTTGATGCATCAGTTGTAGATTTGGTGAAAAAATTTACAGACTCCACAAAGGCAATTGCAGCTATTTGCCATGGCCAATTGGTCCTAGCAGCTGCTGGCTCGGTTAAAGGTCGGAAATGCACAGCTTATCCTTCTTTGGGACCTGTACTTGTTGCTGCAGGTGCTAACTGGGTGGAACCAAAGACCATGGCTGCGTGTGTTGTTGATGGTAACATAATCACAGGGGCTACATATAAAGGCCATCCCGAGTTCATTAGGGCTTTGGTGAAGGCACTAGGAGGCAACATAACTGGTTCAGATAGAAGAGTCCTGTTTCTCTGTGGAGACTTCATGGAAGATTATGAGGTAGCTGTGCCTTTTCAGTCGCTTCAGGCTCTAGGGTGCCATGTTGATGGAGCATGCCCCAAGAAGAAAGCTGGTGATATGTGCGCAACTGCTGTCCATGATTTTGAAGGTGATCAAACCTACAGTGAGAAGCCAGGATATAATTTCACTTTAACAGCTGATTTTGAAGGTTTAGATGCCTCCAGTTATGATGCTCTTGTAATCCCTGGCGGTCGGGCTCCAGAATATTTGGCACTAGATAAGAAAGTTATTGAACTAGTGAAACAAATTATGCAAGCCAAGAAACCAGTTGCATCGATCTGCCATGGGCAACAGATTCTAGCTGCTGCTGGAGTTCTACAGGGAAGGAATTGCACTGCATACCCTGCGGTGAAGCTTAATGTGATTTTGTCAGGAGCAACATGGCTTGAACCCAATCCAATACATCGTTGCTTCACTGATGGGAATTTGGTGACTGGAGCGGCTTGGCCAGGCCACCCGGAGTTCATCTCTCAATTGATGGCATTGCTGGATGTTGGAGTATCATTTTAG

Protein Analysis

359

Amino Acids

38.44

Weight (kDa)

5.85

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 29 - 158 3.4e-37 DJ-1/PfpI family
DJ-1_PfpI PF01965 169 - 351 1.5e-46 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 353
Acc16I TGCGCA 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 585
AccBSI CCGCTC 1 cut(s) 1010
AciI CCGC 4 cut(s) 83, 759, 917, 1010
AclI AACGTT 1 cut(s) 141
AcoI YGGCCR 2 cut(s) 277, 1016
AcsI RAATTY 2 cut(s) 236, 994
AcuI CTGAAG 1 cut(s) 557
AcvI CACGTG 1 cut(s) 104
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 6 cut(s) 136, 146, 656, 716, 803, 959
AhlI ACTAGT 1 cut(s) 805
AjnI CCWGG 4 cut(s) 175, 682, 754, 1018
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 522
AlwNI CAGNNNCTG 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 5 cut(s) 80, 277, 442, 1016, 1021
ApeKI GCWGC 7 cut(s) 263, 293, 296, 359, 395, 872, 875
ApoI RAATTY 2 cut(s) 236, 994
AseI ATTAAT 1 cut(s) 167
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 3 cut(s) 80, 286, 344
AsuC2I CCSGG 1 cut(s) 1028
AsuHPI GGTGA 6 cut(s) 241, 481, 635, 671, 931, 1012
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 2 cut(s) 286, 344
BalI TGGCCA 2 cut(s) 279, 1018
BanI GGYRCC 1 cut(s) 585
BanII GRGCYC 2 cut(s) 190, 769
BbrPI CACGTG 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 7 cut(s) 275, 283, 305, 346, 382, 859, 862
BccI CCATC 6 cut(s) 155, 404, 453, 590, 983, 1042
BciT130I CCWGG 4 cut(s) 177, 684, 756, 1020
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 1 cut(s) 1028
BcoDI GTCTC 1 cut(s) 522
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 6 cut(s) 290, 479, 581, 785, 806, 869
BfmI CTRYAG 3 cut(s) 360, 670, 887
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 9 cut(s) 83, 264, 294, 297, 360, 396, 873, 876, 1011
BlsI GCNGC 9 cut(s) 84, 265, 295, 298, 361, 397, 874, 877, 1012
Bme1390I CCNGG 5 cut(s) 177, 684, 756, 1020, 1028
Bme18I GGWCC 2 cut(s) 286, 344
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 3 cut(s) 80, 286, 344
BmiI GGNNCC 4 cut(s) 345, 381, 587, 768
BmrFI CCNGG 5 cut(s) 177, 684, 756, 1020, 1028
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 5 cut(s) 199, 221, 715, 730, 851
BmuI ACTGGG 1 cut(s) 382
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 4 cut(s) 715, 753, 900, 1026
BpuMI CCSGG 1 cut(s) 1028
Bsa29I ATCGAT 1 cut(s) 845
BsaAI YACGTR 1 cut(s) 104
BsaJI CCNNGG 5 cut(s) 175, 274, 390, 754, 853
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 5 cut(s) 377, 499, 732, 836, 1009
Bse3DI GCAATG 1 cut(s) 1052
BseBI CCWGG 4 cut(s) 177, 684, 756, 1020
BseCI ATCGAT 1 cut(s) 845
BseDI CCNNGG 5 cut(s) 175, 274, 390, 754, 853
BseGI GGATG 3 cut(s) 43, 445, 1066
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 1 cut(s) 1052
BseNI ACTGG 5 cut(s) 377, 499, 732, 836, 1009
BseXI GCAGC 7 cut(s) 275, 283, 305, 346, 382, 859, 862
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 5 cut(s) 82, 279, 444, 1018, 1023
BshNI GGYRCC 1 cut(s) 585
BshVI ATCGAT 1 cut(s) 845
BsiEI CGRYCG 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 1 cut(s) 1028
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 5 cut(s) 82, 279, 444, 1018, 1023
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 190, 769
Bsp143I GATC 2 cut(s) 661, 846
Bsp19I CCATGG 3 cut(s) 274, 390, 853
BspACI CCGC 4 cut(s) 83, 759, 917, 1010
BspANI GGCC 5 cut(s) 82, 279, 444, 1018, 1023
BspDI ATCGAT 1 cut(s) 845
BspLI GGNNCC 4 cut(s) 345, 381, 587, 768
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 585
BsrBI CCGCTC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 1052
BsrI ACTGG 5 cut(s) 377, 499, 732, 836, 1009
BssECI CCNNGG 5 cut(s) 175, 274, 390, 754, 853
BssMI GATC 2 cut(s) 661, 846
BssT1I CCWWGG 3 cut(s) 274, 390, 853
Bst2UI CCWGG 4 cut(s) 177, 684, 756, 1020
Bst4CI ACNGT 1 cut(s) 674
Bst6I CTCTTC 1 cut(s) 502
BstAPI GCANNNNNTGC 1 cut(s) 914
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 4 cut(s) 186, 301, 604, 825
BstDSI CCRYGG 3 cut(s) 274, 390, 853
BstF5I GGATG 3 cut(s) 43, 445, 1066
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 2 cut(s) 664, 849
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 2 cut(s) 661, 846
BstMCI CGRYCG 1 cut(s) 763
BstMWI GCNNNNNNNGC 4 cut(s) 209, 263, 365, 914
BstNI CCWGG 4 cut(s) 177, 684, 756, 1020
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 5 cut(s) 175, 682, 754, 1018, 1026
BstSFI CTRYAG 3 cut(s) 360, 670, 887
BstV1I GCAGC 7 cut(s) 275, 283, 305, 346, 382, 859, 862
BstXI CCANNNNNNTGG 2 cut(s) 104, 596
Bsu15I ATCGAT 1 cut(s) 845
BsuRI GGCC 5 cut(s) 82, 279, 444, 1018, 1023
BsuTUI ATCGAT 1 cut(s) 845
BtgI CCRYGG 3 cut(s) 274, 390, 853
BtsCI GGATG 3 cut(s) 43, 445, 1066
BtsI GCAGTG 1 cut(s) 903
BtsIMutI CAGTG 3 cut(s) 679, 903, 984
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 4 cut(s) 186, 301, 604, 825
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 80, 286, 344
ClaI ATCGAT 1 cut(s) 845
Csp6I GTAC 1 cut(s) 350
CviAII CATG 8 cut(s) 275, 391, 535, 590, 603, 647, 854, 951
CviQI GTAC 1 cut(s) 350
DpnI GATC 2 cut(s) 663, 848
DpnII GATC 2 cut(s) 661, 846
EaeI YGGCCR 2 cut(s) 277, 1016
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 3 cut(s) 274, 390, 853
Eco24I GRGCYC 2 cut(s) 190, 769
Eco32I GATATC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 286, 344
Eco53kI GAGCTC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 557
Eco72I CACGTG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 4 cut(s) 175, 682, 754, 1018
EcoRV GATATC 1 cut(s) 18
EcoT14I CCWWGG 3 cut(s) 274, 390, 853
EcoT22I ATGCAT 1 cut(s) 214
EcoT38I GRGCYC 2 cut(s) 190, 769
ErhI CCWWGG 3 cut(s) 274, 390, 853
FaeI CATG 8 cut(s) 278, 394, 538, 593, 606, 650, 857, 954
FaqI GGGAC 1 cut(s) 357
FatI CATG 8 cut(s) 274, 390, 534, 589, 602, 646, 853, 950
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 9 cut(s) 83, 264, 294, 297, 360, 396, 873, 876, 1011
FokI GGATG 3 cut(s) 50, 432, 1073
FriOI GRGCYC 2 cut(s) 190, 769
Fsp4HI GCNGC 9 cut(s) 83, 264, 294, 297, 360, 396, 873, 876, 1011
FspBI CTAG 6 cut(s) 290, 479, 581, 785, 806, 869
FspI TGCGCA 1 cut(s) 634
GlaI GCGC 1 cut(s) 634
GluI GCNGC 9 cut(s) 83, 264, 294, 297, 360, 396, 873, 876, 1011
GsuI CTGGAG 4 cut(s) 715, 753, 900, 1026
HaeIII GGCC 5 cut(s) 82, 279, 444, 1018, 1023
HapII CCGG 1 cut(s) 1028
HhaI GCGC 1 cut(s) 635
Hin1II CATG 8 cut(s) 278, 394, 538, 593, 606, 650, 857, 954
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 3 cut(s) 245, 510, 865
HpaII CCGG 1 cut(s) 1028
HphI GGTGA 6 cut(s) 241, 481, 635, 671, 931, 1012
Hpy188I TCNGA 2 cut(s) 318, 502
Hpy188III TCNNGA 4 cut(s) 191, 449, 770, 942
HpyAV CCTTC 5 cut(s) 345, 466, 650, 710, 888
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 2 cut(s) 103, 141
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 263, 365, 914
HpySE526I ACGT 2 cut(s) 103, 141
Hsp92II CATG 8 cut(s) 278, 394, 538, 593, 606, 650, 857, 954
HspAI GCGC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 2 cut(s) 661, 846
LmnI GCTCC 5 cut(s) 193, 599, 772, 944, 1007
Lsp1109I GCAGC 7 cut(s) 275, 283, 305, 346, 382, 859, 862
LweI GCATC 5 cut(s) 199, 221, 715, 730, 851
MaeI CTAG 6 cut(s) 290, 479, 581, 785, 806, 869
MaeII ACGT 2 cut(s) 103, 141
MaeIII GTNAC 2 cut(s) 413, 1000
MalI GATC 2 cut(s) 663, 848
MbiI CCGCTC 1 cut(s) 1010
MboI GATC 2 cut(s) 661, 846
MboII GAAGA 3 cut(s) 519, 551, 625
MfeI CAATTG 3 cut(s) 258, 281, 1043
MhlI GDGCHC 2 cut(s) 190, 769
MlsI TGGCCA 2 cut(s) 279, 1018
MluNI TGGCCA 2 cut(s) 279, 1018
MlyI GAGTC 2 cut(s) 239, 519
MmeI TCCRAC 2 cut(s) 296, 1045
MnlI CCTC 4 cut(s) 173, 476, 541, 739
Mox20I TGGCCA 2 cut(s) 279, 1018
Mph1103I ATGCAT 1 cut(s) 214
MscI TGGCCA 2 cut(s) 279, 1018
MseI TTAA 5 cut(s) 8, 167, 309, 701, 927
MslI CAYNNNNRTG 1 cut(s) 594
Msp20I TGGCCA 2 cut(s) 279, 1018
MspA1I CMGCKG 2 cut(s) 296, 707
MspI CCGG 1 cut(s) 1028
MspR9I CCNGG 5 cut(s) 177, 684, 756, 1020, 1028
MunI CAATTG 3 cut(s) 258, 281, 1043
MvaI CCWGG 4 cut(s) 177, 684, 756, 1020
MwoI GCNNNNNNNGC 4 cut(s) 209, 263, 365, 914
NciI CCSGG 1 cut(s) 1028
NcoI CCATGG 3 cut(s) 274, 390, 853
NdeII GATC 2 cut(s) 661, 846
NlaIII CATG 8 cut(s) 278, 394, 538, 593, 606, 650, 857, 954
NlaIV GGNNCC 4 cut(s) 345, 381, 587, 768
NmuCI GTSAC 1 cut(s) 1000
NsbI TGCGCA 1 cut(s) 634
NsiI ATGCAT 1 cut(s) 214
NspI RCATGY 1 cut(s) 606
PaeI GCATGC 1 cut(s) 606
PaqCI CACCTGC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 865
PkrI GCNGC 9 cut(s) 84, 265, 295, 298, 361, 397, 874, 877, 1012
PleI GAGTC 2 cut(s) 239, 518
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
PpsI GAGTC 2 cut(s) 239, 518
Ppu21I YACGTR 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 344
PshBI ATTAAT 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 190
Psp1406I AACGTT 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 4 cut(s) 175, 682, 754, 1018
PspCI CACGTG 1 cut(s) 104
PspGI CCWGG 4 cut(s) 175, 682, 754, 1018
PspN4I GGNNCC 4 cut(s) 345, 381, 587, 768
PspPI GGNCC 3 cut(s) 80, 286, 344
PspPPI RGGWCCY 1 cut(s) 344
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 299
PvuII CAGCTG 2 cut(s) 296, 707
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 594
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 5 cut(s) 8, 167, 309, 701, 927
SatI GCNGC 9 cut(s) 83, 264, 294, 297, 360, 396, 873, 876, 1011
Sau3AI GATC 2 cut(s) 661, 846
Sau96I GGNCC 3 cut(s) 80, 286, 344
SchI GAGTC 2 cut(s) 239, 519
ScrFI CCNGG 5 cut(s) 177, 684, 756, 1020, 1028
SduI GDGCHC 2 cut(s) 190, 769
SfaNI GCATC 5 cut(s) 199, 221, 715, 730, 851
SfcI CTRYAG 3 cut(s) 360, 670, 887
SinI GGWCC 2 cut(s) 286, 344
SmiMI CAYNNNNRTG 1 cut(s) 594
SpeI ACTAGT 1 cut(s) 805
SphI GCATGC 1 cut(s) 606
SsiI CCGC 4 cut(s) 83, 759, 917, 1010
SspI AATATT 1 cut(s) 776
SspMI CTAG 6 cut(s) 290, 479, 581, 785, 806, 869
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 5 cut(s) 175, 682, 754, 1018, 1026
StyI CCWWGG 3 cut(s) 274, 390, 853
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 2 cut(s) 106, 144
TaqI TCGA 1 cut(s) 845
TatI WGTACW 1 cut(s) 349
TauI GCSGC 2 cut(s) 85, 1013
TfiI GAWTC 1 cut(s) 865
Tru1I TTAA 5 cut(s) 8, 167, 309, 701, 927
Tru9I TTAA 5 cut(s) 8, 167, 309, 701, 927
TscAI CASTG 3 cut(s) 679, 910, 991
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 7 cut(s) 263, 293, 296, 359, 395, 872, 875
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 4 cut(s) 42, 445, 523, 1024
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 3 cut(s) 679, 910, 991
VpaK11BI GGWCC 2 cut(s) 286, 344
VspI ATTAAT 1 cut(s) 167
XapI RAATTY 2 cut(s) 236, 994
XceI RCATGY 1 cut(s) 606
XspI CTAG 6 cut(s) 290, 479, 581, 785, 806, 869
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.