RLG00000022959

protein DJ-1 homolog D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004141
Physical Location & Seq
Forward (+)
15868831 .. 15869877
1047 bp
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UTR
Exon/CDS
Intron
RLM00000022959

Sequence Viewer

Length: 543 bp
ATGGGCGCAACTGCTGTCCATGATTTTGAAGGTGATCAAACTTACAGTGAGAAGCCAGGATATAATTTCACTTTAACAGCTGATTTTGAAGGTTTAGATGCCTCCAGTTATGATGCTCTTGTAATCCCTGGCGGTCGGGCTCCAGAATATTTGGCACTAGATAAGAAAGTTATTGAACTAGTGAAACAAATTATGGAAGCCAAGAAACCAGTTGCATCGATCTGCCATGGGCAACAGATTCTAGCTGCTGCTGGCGTTCTACAGTCAAGTTCAAGCTACGCTTTGCTGGTAAACGTTTTTATAACATTTAATGAACTTGCCCATATTTTCTTCTGTTCTTCAGATCAAGTAAATGGTACCAAGGAAGGAATTGCACTGCATTTTGTGCTTAATGTGATTTTTTCAGGAGCAACATGGCTTGAACCCAATCCAATACATCGTTGCTTCACTGATGGGAATTTGGTGACTGGAGTGGTTTGGCCAGGCCACCCGGAGTTCATCTCGCAGTTGATGGCATTGCTGGATGATGGAGTATCATTTTAG

Protein Analysis

181

Amino Acids

19.5

Weight (kDa)

4.72

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 12 - 90 1.7e-22 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AciI CCGC 1 cut(s) 132
AclI AACGTT 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 479
AcsI RAATTY 1 cut(s) 457
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 358
AgsI TTSAA 5 cut(s) 29, 89, 176, 273, 422
AhlI ACTAGT 1 cut(s) 178
AjnI CCWGG 3 cut(s) 55, 127, 481
AluBI AGCT 3 cut(s) 80, 245, 276
AluI AGCT 3 cut(s) 80, 245, 276
AoxI GGCC 2 cut(s) 479, 484
ApeKI GCWGC 2 cut(s) 245, 248
ApoI RAATTY 1 cut(s) 457
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 44, 475
BalI TGGCCA 1 cut(s) 481
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 232, 235
BccI CCATC 3 cut(s) 446, 505, 521
BciT130I CCWGG 3 cut(s) 57, 129, 483
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 491
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 3 cut(s) 158, 179, 242
BfmI CTRYAG 1 cut(s) 260
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 4 cut(s) 57, 129, 483, 491
BmiI GGNNCC 2 cut(s) 141, 358
BmrFI CCNGG 4 cut(s) 57, 129, 483, 491
BmsI GCATC 3 cut(s) 88, 103, 224
BplI GAGNNNNNCTC 2 cut(s) 485, 517
BpmI CTGGAG 3 cut(s) 88, 126, 489
BpuMI CCSGG 1 cut(s) 491
Bsa29I ATCGAT 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 127, 226, 360
Bse1I ACTGG 3 cut(s) 105, 209, 472
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 3 cut(s) 57, 129, 483
BseCI ATCGAT 1 cut(s) 218
BseDI CCNNGG 3 cut(s) 127, 226, 360
BseGI GGATG 1 cut(s) 529
BseMI GCAATG 1 cut(s) 515
BseNI ACTGG 3 cut(s) 105, 209, 472
BseXI GCAGC 2 cut(s) 232, 235
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 481, 486
BshNI GGYRCC 1 cut(s) 356
BshVI ATCGAT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 1 cut(s) 491
BsnI GGCC 2 cut(s) 481, 486
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 3 cut(s) 34, 219, 343
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 132
BspANI GGCC 2 cut(s) 481, 486
BspDI ATCGAT 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 141, 358
BspT107I GGYRCC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 515
BsrI ACTGG 3 cut(s) 105, 209, 472
BssECI CCNNGG 3 cut(s) 127, 226, 360
BssMI GATC 3 cut(s) 34, 219, 343
BssT1I CCWWGG 2 cut(s) 226, 360
Bst2UI CCWGG 3 cut(s) 57, 129, 483
Bst4CI ACNGT 2 cut(s) 47, 264
BstAPI GCANNNNNTGC 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 3 cut(s) 37, 222, 346
BstMBI GATC 3 cut(s) 34, 219, 343
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 3 cut(s) 57, 129, 483
BstSCI CCNGG 4 cut(s) 55, 127, 481, 489
BstSFI CTRYAG 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 232, 235
Bsu15I ATCGAT 1 cut(s) 218
BsuRI GGCC 2 cut(s) 481, 486
BsuTUI ATCGAT 1 cut(s) 218
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 3 cut(s) 52, 374, 447
Cac8I GCNNGC 1 cut(s) 253
CfoI GCGC 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 218
Csp6I GTAC 1 cut(s) 357
CviAII CATG 3 cut(s) 20, 227, 414
CviJI RGCY 9 cut(s) 55, 80, 140, 200, 245, 276, 418, 481, 486
CviKI_1 RGCY 9 cut(s) 55, 80, 140, 200, 245, 276, 418, 481, 486
CviQI GTAC 1 cut(s) 357
DpnI GATC 3 cut(s) 36, 221, 345
DpnII GATC 3 cut(s) 34, 219, 343
EaeI YGGCCR 1 cut(s) 479
Eco130I CCWWGG 2 cut(s) 226, 360
Eco24I GRGCYC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 324
EcoRII CCWGG 3 cut(s) 55, 127, 481
EcoT14I CCWWGG 2 cut(s) 226, 360
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 226, 360
FaeI CATG 3 cut(s) 23, 230, 417
FaiI YATR 8 cut(s) 21, 63, 111, 194, 228, 302, 324, 415
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 3 cut(s) 19, 226, 413
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 246, 249
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 246, 249
FspBI CTAG 3 cut(s) 158, 179, 242
GlaI GCGC 1 cut(s) 7
GluI GCNGC 2 cut(s) 246, 249
GsuI CTGGAG 3 cut(s) 88, 126, 489
HaeIII GGCC 2 cut(s) 481, 486
HapII CCGG 1 cut(s) 491
HhaI GCGC 1 cut(s) 8
Hin1II CATG 3 cut(s) 23, 230, 417
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 491
HphI GGTGA 2 cut(s) 44, 475
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 143, 405
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 3 cut(s) 23, 83, 359
HpyCH4III ACNGT 2 cut(s) 47, 264
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 3 cut(s) 215, 374, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 3 cut(s) 23, 230, 417
HspAI GCGC 1 cut(s) 6
KpnI GGTACC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 3 cut(s) 34, 219, 343
LmnI GCTCC 2 cut(s) 145, 407
Lsp1109I GCAGC 2 cut(s) 232, 235
LweI GCATC 3 cut(s) 88, 103, 224
MaeI CTAG 3 cut(s) 158, 179, 242
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 463
MalI GATC 3 cut(s) 36, 221, 345
MboI GATC 3 cut(s) 34, 219, 343
MboII GAAGA 2 cut(s) 322, 330
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 481
MluCI AATT 4 cut(s) 64, 189, 369, 457
MluNI TGGCCA 1 cut(s) 481
MnlI CCTC 1 cut(s) 112
Mox20I TGGCCA 1 cut(s) 481
MscI TGGCCA 1 cut(s) 481
MseI TTAA 3 cut(s) 74, 309, 390
Msp20I TGGCCA 1 cut(s) 481
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 4 cut(s) 57, 129, 483, 491
MvaI CCWGG 3 cut(s) 57, 129, 483
MwoI GCNNNNNNNGC 1 cut(s) 385
NciI CCSGG 1 cut(s) 491
NcoI CCATGG 1 cut(s) 226
NdeII GATC 3 cut(s) 34, 219, 343
NlaIII CATG 3 cut(s) 23, 230, 417
NlaIV GGNNCC 2 cut(s) 141, 358
NmuCI GTSAC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 2 cut(s) 247, 250
PsiI TTATAA 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 294
Psp6I CCWGG 3 cut(s) 55, 127, 481
PspGI CCWGG 3 cut(s) 55, 127, 481
PspN4I GGNNCC 2 cut(s) 141, 358
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SaqAI TTAA 3 cut(s) 74, 309, 390
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 3 cut(s) 34, 219, 343
ScrFI CCNGG 4 cut(s) 57, 129, 483, 491
SduI GDGCHC 1 cut(s) 142
SetI ASST 6 cut(s) 34, 82, 94, 247, 278, 297
SfaNI GCATC 3 cut(s) 88, 103, 224
SfcI CTRYAG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 178
Sse9I AATT 4 cut(s) 64, 189, 369, 457
SsiI CCGC 1 cut(s) 132
SspI AATATT 1 cut(s) 149
SspMI CTAG 3 cut(s) 158, 179, 242
StyD4I CCNGG 4 cut(s) 55, 127, 481, 489
StyI CCWWGG 2 cut(s) 226, 360
TaaI ACNGT 2 cut(s) 47, 264
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 218
TasI AATT 4 cut(s) 64, 189, 369, 457
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 3 cut(s) 74, 309, 390
Tru9I TTAA 3 cut(s) 74, 309, 390
TscAI CASTG 3 cut(s) 52, 381, 454
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 245, 248
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 327, 487
TspRI CASTG 3 cut(s) 52, 381, 454
XapI RAATTY 1 cut(s) 457
XspI CTAG 3 cut(s) 158, 179, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.