Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004141

Physical Location & Seq

Genomic Coordinates Reverse (-)

35326510 .. 35328667

Gene Structure 2158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGACATCGAATATATATAGCAACTATGATGGAATAATAATTCCCGGAGGACGATCTCCTGAGTATTTTGCTATGGATGCATCGGTTTTAGAATTGGTCAACAAGTTTGCCGCGTCCAGGAAGATAATTGCTGCTATGGGCCGTGGGGTATTGGTCTTAGCAGCTGCAGGCTTGGTTAAGGGGCGCAACTGCACAGGGTTCCCACCTATGAGACCTGTACTCCTTGCTGGGGGCGCTCAGTGGGTGGAACCTGATACCATGGGGACGTGTATCGCCGATGGTAATATAATTACTGGGGTATTGGTCTTAGCAGCTGCAGGCTTGGTTAAGGGGCGCAACTGCACAGGGTTCCCACCTATGAGACCTGTACTCCTTGCTGGGGGCGCTCAGTGGGTGGAACCTGATACCATGGGGACGTGTATCGCCGATGGTAATATAATTACTGGGGTTACATATGAAGGTAATGCTGAGTTCATGAGGCTTTTTGTCAAGGCATTGGGAGGACACATAATTAGTTCAGAGAGAAGGATCCTGTTTCTTTGTGGAGACTTCATGGAAGATTGTGAGACTTTTCAGTCACTTCTAGCACTTGGATGCCATGTTGATGCAGTTTGCCCCAAGAGGAAAGCTGGCGATGTATGTGCAACTGCAGTCCATGATTTTGAAGGTGACCAAACCTACAGTGAGAAGCCAGGCCATAATTTCATTTTGACAGCCAACTTTGAAACTATAGATGCCACAAGGTACGATGCTCTTGTAGTCCCTGGAGGTCGTGCCCCAGAGTATTTGGCATTGAATGAGAAGGTTATTGCATTAGTGAAACATTTTATGGGAGCAAGGAAACTAGTTGCATCCATTTGCCAGGGTCGGCAGATTTTAGCTGCTGCTGGTGTTCTGCAGGGATGGAAATGTACTGCACACCCAACGGTCAGGGTCAATGTAGTTTTGTCAGAAGTAAAATGGGTGGAACCTGATCCAATAGATAGTTCTATTACAGATGGAAATCTGGTAACTGGAGCTGTTTGGCTGGGCCATCCCGACTTCATTTCTCAGATGATGGCATTGCTTGCTGTTCGAGTATCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

362

Amino Acids

38.62

Weight (kDa)

5.99

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	7 - 99	1e-21	DJ-1/PfpI family
DJ-1_PfpI	PF01965	98 - 164	1e-09	DJ-1/PfpI family
DJ-1_PfpI	PF01965	175 - 354	1.8e-36	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02720
fragaria_vesca	FvH4_1g27590 FvH4_7g05680
malus_domestica	MD09G1281500.v1.1 MD09G1281600.v1.1
prunus_persica	Prupe.3G022000_v2.0.a1
pyrus_communis	pycom09g18920 pycom09g18960
rosa_chinensis	RchiOBHm_Chr3g0487821 RchiOBHm_Chr3g0487831 RchiOBHm_Chr3g0487891 RchiOBHm_Chr3g0487941 RchiOBHm_Chr3g0487981
rosa_laevigata	RLG00000022952 RLG00000022958 RLG00000022959 RLG00000022969
rosa_multiflora	Rmu_sc0004448.1_g000032
rosa_roxburghii	Rroxscaffold_3G00252270 Rroxscaffold_6G00394380 Rroxscaffold_6G00394420
rosa_rugosa	Rorug03G0237400 Rorug03G0237500 Rorug03G0237500
rosa_samantha	Rh3AG284900 Rh3AG285300 Rh3AG285600 Rh3BG321900 Rh3BG322300 Rh3CG320900 Rh3DG319100
rosa_wichuraiana	Rw0G004650 Rw3G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	574
AccII	CGCG	1 cut(s)	113
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	3 cut(s)	523, 536, 968
AfaI	GTAC	4 cut(s)	219, 369, 746, 913
AfiI	CCNNNNNNNGG	3 cut(s)	117, 229, 379
AflIII	ACRYGT	2 cut(s)	266, 416
AgsI	TTSAA	3 cut(s)	665, 725, 796
AhlI	ACTAGT	1 cut(s)	844
AjiI	CACGTC	2 cut(s)	267, 417
AjnI	CCWGG	4 cut(s)	116, 691, 763, 861
AjuI	GAANNNNNNNTTGG	2 cut(s)	970, 1002
AluBI	AGCT	5 cut(s)	164, 314, 629, 881, 1019
AluI	AGCT	5 cut(s)	164, 314, 629, 881, 1019
Alw26I	GTCTC	4 cut(s)	205, 355, 540, 560
AlwI	GGATC	3 cut(s)	523, 536, 968
AoxI	GGCC	3 cut(s)	139, 694, 1030
ApeKI	GCWGC	7 cut(s)	131, 161, 164, 311, 314, 881, 884
AspLEI	GCGC	4 cut(s)	186, 236, 336, 386
AspS9I	GGNCC	2 cut(s)	139, 1030
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	778
BamHI	GGATCC	1 cut(s)	528
BbvI	GCAGC	7 cut(s)	118, 151, 173, 301, 323, 868, 871
BccI	CCATC	7 cut(s)	23, 272, 422, 897, 992, 1041, 1051
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	4 cut(s)	118, 693, 765, 863
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	4 cut(s)	205, 355, 540, 560
BcuI	ACTAGT	1 cut(s)	844
BfaI	CTAG	2 cut(s)	584, 845
BfmI	CTRYAG	6 cut(s)	165, 315, 648, 679, 729, 896
BfoI	RGCGCY	2 cut(s)	237, 387
BisI	GCNGC	8 cut(s)	111, 132, 162, 165, 312, 315, 882, 885
BlsI	GCNGC	8 cut(s)	112, 133, 163, 166, 313, 316, 883, 886
Bme1390I	CCNGG	5 cut(s)	45, 118, 693, 765, 863
BmgBI	CACGTC	2 cut(s)	267, 417
BmgT120I	GGNCC	2 cut(s)	139, 1030
BmiI	GGNNCC	6 cut(s)	200, 249, 350, 399, 530, 969
BmrFI	CCNGG	5 cut(s)	45, 118, 693, 765, 863
BmrI	ACTGGG	2 cut(s)	303, 453
BmsI	GCATC	7 cut(s)	67, 89, 584, 595, 724, 739, 860
BmuI	ACTGGG	2 cut(s)	303, 453
BpmI	CTGGAG	2 cut(s)	786, 1035
BpuMI	CCSGG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaI	GGTCTC	2 cut(s)	205, 355
BsaJI	CCNNGG	5 cut(s)	142, 258, 408, 763, 862
BsaXI	ACNNNNNCTCC	4 cut(s)	204, 234, 354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 229, 379
Bse1I	ACTGG	3 cut(s)	298, 448, 1018
Bse3DI	GCAATG	1 cut(s)	1061
Bse8I	GATNNNNATC	1 cut(s)	1002
BseBI	CCWGG	4 cut(s)	118, 693, 765, 863
BseDI	CCNNGG	5 cut(s)	142, 258, 408, 763, 862
BseGI	GGATG	5 cut(s)	82, 599, 851, 908, 1033
BseJI	GATNNNNATC	1 cut(s)	1002
BseLI	CCNNNNNNNGG	3 cut(s)	117, 229, 379
BseMI	GCAATG	1 cut(s)	1061
BseMII	CTCAG	5 cut(s)	51, 251, 401, 459, 1064
BseNI	ACTGG	3 cut(s)	298, 448, 1018
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	7 cut(s)	118, 151, 173, 301, 323, 868, 871
BseYI	CCCAGC	3 cut(s)	227, 377, 1027
BsgI	GTGCAG	3 cut(s)	175, 325, 900
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	141, 696, 1032
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	3 cut(s)	277, 427, 746
BslI	CCNNNNNNNGG	3 cut(s)	117, 229, 379
BsmAI	GTCTC	4 cut(s)	205, 355, 540, 560
BsmFI	GGGAC	3 cut(s)	277, 427, 746
BsnI	GGCC	3 cut(s)	141, 696, 1032
Bso31I	GGTCTC	2 cut(s)	205, 355
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp143I	GATC	3 cut(s)	53, 528, 973
Bsp19I	CCATGG	2 cut(s)	258, 408
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	3 cut(s)	141, 696, 1032
BspCNI	CTCAG	5 cut(s)	52, 250, 400, 460, 1063
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	6 cut(s)	200, 249, 350, 399, 530, 969
BspMAI	CTGCAG	4 cut(s)	169, 319, 652, 900
BspPI	GGATC	3 cut(s)	523, 536, 968
BspTNI	GGTCTC	2 cut(s)	205, 355
BsrDI	GCAATG	1 cut(s)	1061
BsrI	ACTGG	3 cut(s)	298, 448, 1018
BssECI	CCNNGG	5 cut(s)	142, 258, 408, 763, 862
BssMI	GATC	3 cut(s)	53, 528, 973
BssT1I	CCWWGG	2 cut(s)	258, 408
Bst2UI	CCWGG	4 cut(s)	118, 693, 765, 863
Bst4CI	ACNGT	2 cut(s)	683, 928
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstC8I	GCNNGC	4 cut(s)	169, 319, 631, 1068
BstDEI	CTNAG	7 cut(s)	60, 157, 237, 307, 387, 468, 1050
BstDSI	CCRYGG	3 cut(s)	142, 258, 408
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	5 cut(s)	82, 599, 851, 908, 1033
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	2 cut(s)	237, 387
BstHHI	GCGC	4 cut(s)	186, 236, 336, 386
BstKTI	GATC	3 cut(s)	56, 531, 976
BstMAI	GTCTC	4 cut(s)	205, 355, 540, 560
BstMBI	GATC	3 cut(s)	53, 528, 973
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 233, 383, 1067
BstNI	CCWGG	4 cut(s)	118, 693, 765, 863
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	5 cut(s)	43, 116, 691, 763, 861
BstSFI	CTRYAG	6 cut(s)	165, 315, 648, 679, 729, 896
BstSLI	GKGCMC	1 cut(s)	778
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	7 cut(s)	118, 151, 173, 301, 323, 868, 871
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	141, 696, 1032
BtgI	CCRYGG	3 cut(s)	142, 258, 408
BtgZI	GCGATG	1 cut(s)	648
BtrI	CACGTC	2 cut(s)	267, 417
BtsCI	GGATG	5 cut(s)	82, 599, 851, 908, 1033
BtsIMutI	CAGTG	3 cut(s)	245, 395, 688
Cac8I	GCNNGC	4 cut(s)	169, 319, 631, 1068
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	4 cut(s)	186, 236, 336, 386
Cfr13I	GGNCC	2 cut(s)	139, 1030
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	4 cut(s)	218, 368, 745, 912
CviAII	CATG	6 cut(s)	259, 409, 475, 553, 599, 656
CviQI	GTAC	4 cut(s)	218, 368, 745, 912
DdeI	CTNAG	7 cut(s)	60, 157, 237, 307, 387, 468, 1050
DpnI	GATC	3 cut(s)	55, 530, 975
DpnII	GATC	3 cut(s)	53, 528, 973
DrdI	GACNNNNNNGTC	1 cut(s)	574
DseDI	GACNNNNNNGTC	1 cut(s)	574
Eco130I	CCWWGG	2 cut(s)	258, 408
Eco31I	GGTCTC	2 cut(s)	205, 355
Eco91I	GGTNACC	1 cut(s)	668
EcoO65I	GGTNACC	1 cut(s)	668
EcoRII	CCWGG	4 cut(s)	116, 691, 763, 861
EcoT14I	CCWWGG	2 cut(s)	258, 408
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	2 cut(s)	258, 408
FaeI	CATG	6 cut(s)	262, 412, 478, 556, 602, 659
FaqI	GGGAC	3 cut(s)	277, 427, 746
FatI	CATG	6 cut(s)	258, 408, 474, 552, 598, 655
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	8 cut(s)	111, 132, 162, 165, 312, 315, 882, 885
FokI	GGATG	5 cut(s)	89, 606, 838, 915, 1020
Fsp4HI	GCNGC	8 cut(s)	111, 132, 162, 165, 312, 315, 882, 885
FspBI	CTAG	2 cut(s)	584, 845
GlaI	GCGC	4 cut(s)	185, 235, 335, 385
GluI	GCNGC	8 cut(s)	111, 132, 162, 165, 312, 315, 882, 885
GsaI	CCCAGC	3 cut(s)	231, 381, 1031
GsuI	CTGGAG	2 cut(s)	786, 1035
HaeII	RGCGCY	2 cut(s)	237, 387
HaeIII	GGCC	3 cut(s)	141, 696, 1032
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	4 cut(s)	186, 236, 336, 386
Hin1II	CATG	6 cut(s)	262, 412, 478, 556, 602, 659
Hin6I	GCGC	4 cut(s)	184, 234, 334, 384
HinP1I	GCGC	4 cut(s)	184, 234, 334, 384
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	520, 952, 1053
Hpy188III	TCNNGA	3 cut(s)	59, 475, 1037
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	4 cut(s)	452, 519, 659, 796
HpyCH4III	ACNGT	2 cut(s)	683, 928
HpyCH4IV	ACGT	2 cut(s)	266, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 233, 383, 1067
HpyF3I	CTNAG	7 cut(s)	60, 157, 237, 307, 387, 468, 1050
HpySE526I	ACGT	2 cut(s)	266, 416
Hsp92II	CATG	6 cut(s)	262, 412, 478, 556, 602, 659
HspAI	GCGC	4 cut(s)	184, 234, 334, 384
Kzo9I	GATC	3 cut(s)	53, 528, 973
LmnI	GCTCC	2 cut(s)	833, 1016
Lsp1109I	GCAGC	7 cut(s)	118, 151, 173, 301, 323, 868, 871
LweI	GCATC	7 cut(s)	67, 89, 584, 595, 724, 739, 860
MaeI	CTAG	2 cut(s)	584, 845
MaeII	ACGT	2 cut(s)	266, 416
MaeIII	GTNAC	4 cut(s)	448, 576, 668, 1009
MalI	GATC	3 cut(s)	55, 530, 975
MboI	GATC	3 cut(s)	53, 528, 973
MboII	GAAGA	2 cut(s)	133, 569
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	778
MluCI	AATT	7 cut(s)	39, 92, 126, 288, 438, 510, 700
MnlI	CCTC	5 cut(s)	41, 471, 494, 615, 761
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	2 cut(s)	177, 327
MslI	CAYNNNNRTG	2 cut(s)	592, 603
MspA1I	CMGCKG	2 cut(s)	164, 314
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	5 cut(s)	45, 118, 693, 765, 863
MvaI	CCWGG	4 cut(s)	118, 693, 765, 863
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	77, 233, 383, 1067
NciI	CCSGG	1 cut(s)	45
NcoI	CCATGG	2 cut(s)	258, 408
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	3 cut(s)	53, 528, 973
NlaIII	CATG	6 cut(s)	262, 412, 478, 556, 602, 659
NlaIV	GGNNCC	6 cut(s)	200, 249, 350, 399, 530, 969
NmuCI	GTSAC	2 cut(s)	576, 668
NsiI	ATGCAT	1 cut(s)	82
PagI	TCATGA	1 cut(s)	474
PfoI	TCCNGGA	2 cut(s)	43, 116
PkrI	GCNGC	8 cut(s)	112, 133, 163, 166, 313, 316, 883, 886
Psp6I	CCWGG	4 cut(s)	116, 691, 763, 861
PspEI	GGTNACC	1 cut(s)	668
PspFI	CCCAGC	3 cut(s)	227, 377, 1027
PspGI	CCWGG	4 cut(s)	116, 691, 763, 861
PspN4I	GGNNCC	6 cut(s)	200, 249, 350, 399, 530, 969
PspPI	GGNCC	2 cut(s)	139, 1030
PstI	CTGCAG	4 cut(s)	169, 319, 652, 900
PsuI	RGATCY	1 cut(s)	528
PvuII	CAGCTG	2 cut(s)	164, 314
RsaI	GTAC	4 cut(s)	219, 369, 746, 913
RsaNI	GTAC	4 cut(s)	218, 368, 745, 912
RseI	CAYNNNNRTG	2 cut(s)	592, 603
SaqAI	TTAA	2 cut(s)	177, 327
SatI	GCNGC	8 cut(s)	111, 132, 162, 165, 312, 315, 882, 885
Sau3AI	GATC	3 cut(s)	53, 528, 973
Sau96I	GGNCC	2 cut(s)	139, 1030
ScrFI	CCNGG	5 cut(s)	45, 118, 693, 765, 863
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	7 cut(s)	67, 89, 584, 595, 724, 739, 860
SfcI	CTRYAG	6 cut(s)	165, 315, 648, 679, 729, 896
SmiMI	CAYNNNNRTG	2 cut(s)	592, 603
SpeI	ACTAGT	1 cut(s)	844
Sse9I	AATT	7 cut(s)	39, 92, 126, 288, 438, 510, 700
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	584, 845
StyD4I	CCNGG	5 cut(s)	43, 116, 691, 763, 861
StyI	CCWWGG	2 cut(s)	258, 408
TaaI	ACNGT	2 cut(s)	683, 928
TaiI	ACGT	2 cut(s)	269, 419
TaqI	TCGA	2 cut(s)	8, 1075
TasI	AATT	7 cut(s)	39, 92, 126, 288, 438, 510, 700
TatI	WGTACW	3 cut(s)	217, 367, 911
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	177, 327
Tru9I	TTAA	2 cut(s)	177, 327
TscAI	CASTG	3 cut(s)	245, 395, 688
TseFI	GTSAC	2 cut(s)	576, 668
TseI	GCWGC	7 cut(s)	131, 161, 164, 311, 314, 881, 884
Tsp45I	GTSAC	2 cut(s)	576, 668
TspDTI	ATGAA	5 cut(s)	463, 471, 541, 694, 1033
TspRI	CASTG	3 cut(s)	245, 395, 688
XspI	CTAG	2 cut(s)	584, 845
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.