Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004141

Physical Location & Seq

Genomic Coordinates Reverse (-)

35159953 .. 35162543

Gene Structure 2591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGCCGTGGGGTATTGGTCTTAGCAGCTGCAGGCTTGGTTAAGGGGAGCAACTGCACAGGGTTCCCACCTATGAGACCTGTACTCCTTGCTGGGGGTGCTCAGTGGGTGGAACCTGATACCATGGGGACATGTATTGCCGATGGTAATATAATTACTGGGGTTACATATGAAGGTAATGCTGAGTTCATCAGGCTTTTTGTCAAGGCATTGGGAGGACACATAATTAGTTCAGAGAGAAGGATCCTGTTTTTCTGTGGAAGGAAAGCTGGCGATGTATGTGCAACTACAGTACATGATTTTGAAGGTGACCAAACCTACAGTGAGAAGCCAGGCCATAATTTCATTTTGACAGCCAACTTTGAAACTATAAATGCCACAAGGTACGATGCTCTTGTAGTCCCTGGAGGTCGTGCCCCAGAGTATTTGGCATTGAATGAGAAGGTTATTGCATTAGTGAAACATTTTATGGGAGCAAGGAAACCAGTTGCATCCATTTGCCAGGGTCAGCAGATTTTAGCTGCTACTGGTGTTCTGCAGGGATGGAAATGTACTGCACACCCAACGGTCAGGGTCAATGTAGTTTTGTCAGAAGTAAAATGGGTGGAACCTGATCCAATAGATAGTTCTATTACAGATGGAAATCTGGTAACTGGAGCTGTTTGGCTGGGCCATCCCGACTTCATTTCTCAGTTGATGGCATTGCTTGCTGTTCGAGTATCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

242

Amino Acids

25.89

Weight (kDa)

6.58

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	3 - 69	1e-08	DJ-1/PfpI family
DJ-1_PfpI	PF01965	102 - 234	1.9e-33	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02720
fragaria_vesca	FvH4_1g27590 FvH4_7g05680
malus_domestica	MD09G1281500.v1.1 MD09G1281600.v1.1
prunus_persica	Prupe.3G022000_v2.0.a1
pyrus_communis	pycom09g18920 pycom09g18960
rosa_chinensis	RchiOBHm_Chr3g0487821 RchiOBHm_Chr3g0487831 RchiOBHm_Chr3g0487891 RchiOBHm_Chr3g0487941 RchiOBHm_Chr3g0487981
rosa_laevigata	RLG00000022952 RLG00000022958 RLG00000022959 RLG00000022969
rosa_multiflora	Rmu_sc0004448.1_g000032
rosa_roxburghii	Rroxscaffold_3G00252270 Rroxscaffold_6G00394380 Rroxscaffold_6G00394420
rosa_rugosa	Rorug03G0237400 Rorug03G0237500 Rorug03G0237500
rosa_samantha	Rh3AG284900 Rh3AG285300 Rh3AG285600 Rh3BG321900 Rh3BG322300 Rh3CG320900 Rh3DG319100
rosa_wichuraiana	Rw0G004650 Rw3G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	238, 251, 608
AfaI	GTAC	4 cut(s)	84, 294, 386, 553
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	305, 365, 436
AjnI	CCWGG	3 cut(s)	331, 403, 501
AjuI	GAANNNNNNNTTGG	2 cut(s)	610, 642
AluBI	AGCT	4 cut(s)	29, 269, 521, 659
AluI	AGCT	4 cut(s)	29, 269, 521, 659
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	3 cut(s)	238, 251, 608
AoxI	GGCC	3 cut(s)	4, 334, 670
ApeKI	GCWGC	3 cut(s)	26, 29, 521
AspS9I	GGNCC	2 cut(s)	4, 670
AsuHPI	GGTGA	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	418
BamHI	GGATCC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	3 cut(s)	16, 38, 508
BccI	CCATC	5 cut(s)	137, 537, 632, 681, 691
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	3 cut(s)	333, 405, 503
BcoDI	GTCTC	1 cut(s)	70
BfmI	CTRYAG	4 cut(s)	30, 288, 319, 536
BisI	GCNGC	3 cut(s)	27, 30, 522
BlsI	GCNGC	3 cut(s)	28, 31, 523
Bme1390I	CCNGG	3 cut(s)	333, 405, 503
BmgT120I	GGNCC	2 cut(s)	4, 670
BmiI	GGNNCC	4 cut(s)	65, 114, 245, 609
BmrFI	CCNGG	3 cut(s)	333, 405, 503
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	379, 500
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	426, 675
BsaBI	GATNNNNATC	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	4 cut(s)	7, 123, 403, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	4 cut(s)	163, 485, 532, 658
Bse3DI	GCAATG	1 cut(s)	701
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	3 cut(s)	333, 405, 503
BseDI	CCNNGG	4 cut(s)	7, 123, 403, 502
BseGI	GGATG	3 cut(s)	491, 548, 673
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	701
BseMII	CTCAG	3 cut(s)	116, 174, 704
BseNI	ACTGG	4 cut(s)	163, 485, 532, 658
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	3 cut(s)	16, 38, 508
BseYI	CCCAGC	2 cut(s)	92, 667
BsgI	GTGCAG	2 cut(s)	40, 540
BshFI	GGCC	3 cut(s)	6, 336, 672
BsiHKAI	GWGCWC	1 cut(s)	103
BslFI	GGGAC	2 cut(s)	142, 386
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	2 cut(s)	142, 386
BsnI	GGCC	3 cut(s)	6, 336, 672
Bso31I	GGTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	103, 418
Bsp143I	GATC	2 cut(s)	243, 613
Bsp19I	CCATGG	1 cut(s)	123
BspANI	GGCC	3 cut(s)	6, 336, 672
BspCNI	CTCAG	3 cut(s)	115, 175, 703
BspLI	GGNNCC	4 cut(s)	65, 114, 245, 609
BspMAI	CTGCAG	2 cut(s)	34, 540
BspPI	GGATC	3 cut(s)	238, 251, 608
BspTNI	GGTCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	701
BsrI	ACTGG	4 cut(s)	163, 485, 532, 658
BssECI	CCNNGG	4 cut(s)	7, 123, 403, 502
BssMI	GATC	2 cut(s)	243, 613
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	333, 405, 503
Bst4CI	ACNGT	3 cut(s)	292, 323, 568
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	3 cut(s)	34, 271, 708
BstDEI	CTNAG	4 cut(s)	22, 102, 183, 690
BstDSI	CCRYGG	2 cut(s)	7, 123
BstEII	GGTNACC	1 cut(s)	308
BstF5I	GGATG	3 cut(s)	491, 548, 673
BstKTI	GATC	2 cut(s)	246, 616
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	243, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 707
BstNI	CCWGG	3 cut(s)	333, 405, 503
BstNSI	RCATGY	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	331, 403, 501
BstSFI	CTRYAG	4 cut(s)	30, 288, 319, 536
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	16, 38, 508
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	6, 336, 672
BtgI	CCRYGG	2 cut(s)	7, 123
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	491, 548, 673
BtsIMutI	CAGTG	2 cut(s)	110, 328
Cac8I	GCNNGC	3 cut(s)	34, 271, 708
Cfr13I	GGNCC	2 cut(s)	4, 670
Csp6I	GTAC	4 cut(s)	83, 293, 385, 552
CviAII	CATG	3 cut(s)	124, 132, 296
CviQI	GTAC	4 cut(s)	83, 293, 385, 552
DdeI	CTNAG	4 cut(s)	22, 102, 183, 690
DpnI	GATC	2 cut(s)	245, 615
DpnII	GATC	2 cut(s)	243, 613
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRII	CCWGG	3 cut(s)	331, 403, 501
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	127, 135, 299
FaqI	GGGAC	2 cut(s)	142, 386
FatI	CATG	3 cut(s)	123, 131, 295
FauNDI	CATATG	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	27, 30, 522
FokI	GGATG	3 cut(s)	478, 555, 660
Fsp4HI	GCNGC	3 cut(s)	27, 30, 522
GluI	GCNGC	3 cut(s)	27, 30, 522
GsaI	CCCAGC	2 cut(s)	96, 671
GsuI	CTGGAG	2 cut(s)	426, 675
HaeIII	GGCC	3 cut(s)	6, 336, 672
Hin1II	CATG	3 cut(s)	127, 135, 299
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	235, 592
Hpy188III	TCNNGA	1 cut(s)	677
HpyAV	CCTTC	5 cut(s)	167, 234, 255, 299, 436
HpyCH4III	ACNGT	3 cut(s)	292, 323, 568
HpyCH4V	TGCA	7 cut(s)	32, 57, 284, 452, 491, 538, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 707
HpyF3I	CTNAG	4 cut(s)	22, 102, 183, 690
Hsp92II	CATG	3 cut(s)	127, 135, 299
Kzo9I	GATC	2 cut(s)	243, 613
LmnI	GCTCC	3 cut(s)	48, 473, 656
Lsp1109I	GCAGC	3 cut(s)	16, 38, 508
LweI	GCATC	2 cut(s)	379, 500
MaeIII	GTNAC	3 cut(s)	163, 308, 649
MalI	GATC	2 cut(s)	245, 615
MboI	GATC	2 cut(s)	243, 613
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	103, 418
MluCI	AATT	3 cut(s)	153, 225, 340
MnlI	CCTC	2 cut(s)	209, 401
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	29
MspR9I	CCNGG	3 cut(s)	333, 405, 503
MvaI	CCWGG	3 cut(s)	333, 405, 503
MwoI	GCNNNNNNNGC	2 cut(s)	98, 707
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	2 cut(s)	243, 613
NlaIII	CATG	3 cut(s)	127, 135, 299
NlaIV	GGNNCC	4 cut(s)	65, 114, 245, 609
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	135
PciI	ACATGT	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	28, 31, 523
PscI	ACATGT	1 cut(s)	131
Psp6I	CCWGG	3 cut(s)	331, 403, 501
PspEI	GGTNACC	1 cut(s)	308
PspFI	CCCAGC	2 cut(s)	92, 667
PspGI	CCWGG	3 cut(s)	331, 403, 501
PspN4I	GGNNCC	4 cut(s)	65, 114, 245, 609
PspPI	GGNCC	2 cut(s)	4, 670
PstI	CTGCAG	2 cut(s)	34, 540
PsuI	RGATCY	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	4 cut(s)	84, 294, 386, 553
RsaNI	GTAC	4 cut(s)	83, 293, 385, 552
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	27, 30, 522
Sau3AI	GATC	2 cut(s)	243, 613
Sau96I	GGNCC	2 cut(s)	4, 670
ScrFI	CCNGG	3 cut(s)	333, 405, 503
SduI	GDGCHC	2 cut(s)	103, 418
SfaNI	GCATC	2 cut(s)	379, 500
SfcI	CTRYAG	4 cut(s)	30, 288, 319, 536
Sse9I	AATT	3 cut(s)	153, 225, 340
StyD4I	CCNGG	3 cut(s)	331, 403, 501
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	292, 323, 568
TaqI	TCGA	1 cut(s)	715
TasI	AATT	3 cut(s)	153, 225, 340
TatI	WGTACW	3 cut(s)	82, 292, 551
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	110, 328
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	26, 29, 521
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	4 cut(s)	178, 186, 334, 673
TspRI	CASTG	2 cut(s)	110, 328
XceI	RCATGY	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.