PHD zinc finger
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SPOC_AIPP2 | PF23121 | 642 - 773 | 6.9e-49 | AIPP2, SPOC-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 326, 2352 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1476 |
| AbsI | CCTCGAGG | 1 cut(s) | 2405 |
| AccB1I | GGYRCC | 1 cut(s) | 1846 |
| AccI | GTMKAC | 1 cut(s) | 2066 |
| AciI | CCGC | 5 cut(s) | 116, 662, 1631, 1718, 2820 |
| AclI | AACGTT | 1 cut(s) | 846 |
| AclWI | GGATC | 3 cut(s) | 605, 943, 2003 |
| AcsI | RAATTY | 8 cut(s) | 119, 884, 1210, 1619, 1903, 2134, 2960, 2975 |
| AcuI | CTGAAG | 2 cut(s) | 1344, 2918 |
| AcvI | CACGTG | 1 cut(s) | 1376 |
| AfaI | GTAC | 5 cut(s) | 171, 1605, 1963, 2019, 2244 |
| AfeI | AGCGCT | 1 cut(s) | 2462 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 527, 870, 1614, 1615 |
| AflIII | ACRYGT | 1 cut(s) | 2469 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 524 |
| AjnI | CCWGG | 3 cut(s) | 1888, 2246, 2803 |
| AleI | CACNNNNGTG | 1 cut(s) | 1053 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 531, 563 |
| Alw21I | GWGCWC | 3 cut(s) | 1148, 1292, 1346 |
| Alw26I | GTCTC | 1 cut(s) | 1156 |
| AlwI | GGATC | 3 cut(s) | 605, 943, 2003 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 899, 2804 |
| Ama87I | CYCGRG | 2 cut(s) | 978, 2405 |
| Aor51HI | AGCGCT | 1 cut(s) | 2462 |
| AoxI | GGCC | 6 cut(s) | 349, 365, 417, 1865, 2261, 2801 |
| ApeKI | GCWGC | 3 cut(s) | 1715, 1727, 2048 |
| ApoI | RAATTY | 8 cut(s) | 119, 884, 1210, 1619, 1903, 2134, 2960, 2975 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2048, 2080 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 546, 2705 |
| AspLEI | GCGC | 1 cut(s) | 2463 |
| AspS9I | GGNCC | 4 cut(s) | 350, 518, 2801, 2879 |
| AsuC2I | CCSGG | 3 cut(s) | 234, 1609, 2546 |
| AsuHPI | GGTGA | 6 cut(s) | 930, 1655, 2178, 2218, 2221, 2741 |
| AsuNHI | GCTAGC | 1 cut(s) | 1021 |
| AvaI | CYCGRG | 2 cut(s) | 978, 2405 |
| AvaII | GGWCC | 2 cut(s) | 518, 2879 |
| AxyI | CCTNAGG | 2 cut(s) | 753, 2190 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2150, 2183, 2937, 2970 |
| BanI | GGYRCC | 1 cut(s) | 1846 |
| BanII | GRGCYC | 4 cut(s) | 928, 1148, 1292, 1998 |
| BbrPI | CACGTG | 1 cut(s) | 1376 |
| BbsI | GAAGAC | 3 cut(s) | 1202, 2798, 2906 |
| Bbv12I | GWGCWC | 3 cut(s) | 1148, 1292, 1346 |
| BbvCI | CCTCAGC | 1 cut(s) | 2074 |
| BbvI | GCAGC | 3 cut(s) | 1714, 1727, 2035 |
| BccI | CCATC | 6 cut(s) | 276, 420, 698, 1430, 1592, 2087 |
| BceAI | ACGGC | 1 cut(s) | 2811 |
| BciT130I | CCWGG | 3 cut(s) | 1890, 2248, 2805 |
| BciVI | GTATCC | 1 cut(s) | 2938 |
| BcnI | CCSGG | 3 cut(s) | 234, 1609, 2546 |
| BcoDI | GTCTC | 1 cut(s) | 1156 |
| BfaI | CTAG | 8 cut(s) | 255, 431, 623, 812, 1022, 1149, 1490, 2983 |
| BfmI | CTRYAG | 1 cut(s) | 688 |
| BfoI | RGCGCY | 1 cut(s) | 2464 |
| BfuI | GTATCC | 1 cut(s) | 2938 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1894 |
| BglII | AGATCT | 3 cut(s) | 329, 858, 947 |
| BisI | GCNGC | 3 cut(s) | 1716, 1728, 2049 |
| BlsI | GCNGC | 3 cut(s) | 1717, 1729, 2050 |
| Bme1390I | CCNGG | 6 cut(s) | 234, 1609, 1890, 2248, 2546, 2805 |
| Bme18I | GGWCC | 2 cut(s) | 518, 2879 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 524 |
| BmeT110I | CYCGRG | 2 cut(s) | 978, 2405 |
| BmgT120I | GGNCC | 4 cut(s) | 350, 518, 2801, 2879 |
| BmiI | GGNNCC | 1 cut(s) | 1848 |
| BmrFI | CCNGG | 6 cut(s) | 234, 1609, 1890, 2248, 2546, 2805 |
| BmrI | ACTGGG | 1 cut(s) | 1209 |
| BmtI | GCTAGC | 1 cut(s) | 1025 |
| BmuI | ACTGGG | 1 cut(s) | 1209 |
| BpiI | GAAGAC | 3 cut(s) | 1202, 2798, 2906 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2501, 2533 |
| BpmI | CTGGAG | 4 cut(s) | 847, 1036, 1079, 1773 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2074, 2179, 2289 |
| BpuEI | CTTGAG | 1 cut(s) | 2433 |
| BpuMI | CCSGG | 3 cut(s) | 234, 1609, 2546 |
| BsaAI | YACGTR | 1 cut(s) | 1376 |
| BsaI | GGTCTC | 1 cut(s) | 1156 |
| BsaWI | WCCGGW | 1 cut(s) | 125 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 531, 561 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 527, 870, 1614, 1615 |
| Bse118I | RCCGGY | 1 cut(s) | 1849 |
| Bse21I | CCTNAGG | 2 cut(s) | 753, 2190 |
| Bse3DI | GCAATG | 1 cut(s) | 2151 |
| BseBI | CCWGG | 3 cut(s) | 1890, 2248, 2805 |
| BseGI | GGATG | 9 cut(s) | 1177, 1364, 1385, 1897, 2079, 2665, 2743, 2854, 2930 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 527, 870, 1614, 1615 |
| BseMI | GCAATG | 1 cut(s) | 2151 |
| BseMII | CTCAG | 7 cut(s) | 291, 300, 780, 2082, 2088, 2682, 2739 |
| BseRI | GAGGAG | 1 cut(s) | 2669 |
| BseXI | GCAGC | 3 cut(s) | 1714, 1727, 2035 |
| BseYI | CCCAGC | 1 cut(s) | 1745 |
| BsgI | GTGCAG | 5 cut(s) | 729, 1713, 2141, 2250, 2701 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1613 |
| BshFI | GGCC | 6 cut(s) | 351, 367, 419, 1867, 2263, 2803 |
| BshNI | GGYRCC | 1 cut(s) | 1846 |
| BsiEI | CGRYCG | 1 cut(s) | 1613 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1148, 1292, 1346 |
| BsiHKCI | CYCGRG | 2 cut(s) | 978, 2405 |
| BsiSI | CCGG | 5 cut(s) | 126, 234, 1609, 1850, 2546 |
| BslFI | GGGAC | 5 cut(s) | 212, 1084, 1392, 2123, 2821 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 527, 870, 1614, 1615 |
| BsmAI | GTCTC | 1 cut(s) | 1156 |
| BsmFI | GGGAC | 5 cut(s) | 212, 1084, 1392, 2123, 2821 |
| BsmI | GAATGC | 5 cut(s) | 310, 511, 2640, 2705, 2707 |
| BsnI | GGCC | 6 cut(s) | 351, 367, 419, 1867, 2263, 2803 |
| Bso31I | GGTCTC | 1 cut(s) | 1156 |
| BsoBI | CYCGRG | 2 cut(s) | 978, 2405 |
| Bsp1286I | GDGCHC | 5 cut(s) | 928, 1148, 1292, 1346, 1998 |
| Bsp1407I | TGTACA | 1 cut(s) | 2017 |
| Bsp19I | CCATGG | 3 cut(s) | 30, 163, 346 |
| BspACI | CCGC | 5 cut(s) | 116, 662, 1631, 1718, 2820 |
| BspANI | GGCC | 6 cut(s) | 351, 367, 419, 1867, 2263, 2803 |
| BspCNI | CTCAG | 7 cut(s) | 292, 301, 781, 2083, 2087, 2683, 2740 |
| BspHI | TCATGA | 2 cut(s) | 286, 2028 |
| BspLI | GGNNCC | 1 cut(s) | 1848 |
| BspOI | GCTAGC | 1 cut(s) | 1025 |
| BspPI | GGATC | 3 cut(s) | 605, 943, 2003 |
| BspT107I | GGYRCC | 1 cut(s) | 1846 |
| BspTNI | GGTCTC | 1 cut(s) | 1156 |
| BsrDI | GCAATG | 1 cut(s) | 2151 |
| BsrFI | RCCGGY | 1 cut(s) | 1849 |
| BsrGI | TGTACA | 1 cut(s) | 2017 |
| BssAI | RCCGGY | 1 cut(s) | 1849 |
| BssT1I | CCWWGG | 6 cut(s) | 30, 163, 346, 521, 1879, 2322 |
| Bst2UI | CCWGG | 3 cut(s) | 1890, 2248, 2805 |
| Bst4CI | ACNGT | 8 cut(s) | 60, 596, 1487, 1933, 2271, 2778, 2812, 2905 |
| Bst6I | CTCTTC | 3 cut(s) | 7, 471, 768 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1976 |
| BstAUI | TGTACA | 1 cut(s) | 2017 |
| BstBAI | YACGTR | 1 cut(s) | 1376 |
| BstC8I | GCNNGC | 8 cut(s) | 104, 178, 265, 1023, 1713, 2265, 2459, 2680 |
| BstDSI | CCRYGG | 3 cut(s) | 30, 163, 346 |
| BstF5I | GGATG | 9 cut(s) | 1177, 1364, 1385, 1897, 2079, 2665, 2743, 2854, 2930 |
| BstH2I | RGCGCY | 1 cut(s) | 2464 |
| BstHHI | GCGC | 1 cut(s) | 2463 |
| BstMAI | GTCTC | 1 cut(s) | 1156 |
| BstMCI | CGRYCG | 1 cut(s) | 1613 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 736, 794, 923, 1724, 1894, 1976, 2628 |
| BstNI | CCWGG | 3 cut(s) | 1890, 2248, 2805 |
| BstNSI | RCATGY | 3 cut(s) | 106, 2303, 2473 |
| BstSCI | CCNGG | 6 cut(s) | 232, 1607, 1888, 2246, 2544, 2803 |
| BstSFI | CTRYAG | 1 cut(s) | 688 |
| BstV1I | GCAGC | 3 cut(s) | 1714, 1727, 2035 |
| BstV2I | GAAGAC | 3 cut(s) | 1202, 2798, 2906 |
| BstX2I | RGATCY | 3 cut(s) | 329, 858, 947 |
| BstYI | RGATCY | 3 cut(s) | 329, 858, 947 |
| Bsu36I | CCTNAGG | 2 cut(s) | 753, 2190 |
| BsuI | GTATCC | 1 cut(s) | 2938 |
| BsuRI | GGCC | 6 cut(s) | 351, 367, 419, 1867, 2263, 2803 |
| BtgI | CCRYGG | 3 cut(s) | 30, 163, 346 |
| BtsCI | GGATG | 9 cut(s) | 1177, 1364, 1385, 1897, 2079, 2665, 2743, 2854, 2930 |
| BtsI | GCAGTG | 3 cut(s) | 706, 1730, 2689 |
| Cac8I | GCNNGC | 8 cut(s) | 104, 178, 265, 1023, 1713, 2265, 2459, 2680 |
| CaiI | CAGNNNCTG | 2 cut(s) | 899, 2804 |
| CciI | TCATGA | 2 cut(s) | 286, 2028 |
| CfoI | GCGC | 1 cut(s) | 2463 |
| Cfr10I | RCCGGY | 1 cut(s) | 1849 |
| Cfr13I | GGNCC | 4 cut(s) | 350, 518, 2801, 2879 |
| CseI | GACGC | 1 cut(s) | 2421 |
| Csp6I | GTAC | 5 cut(s) | 170, 1604, 1962, 2018, 2243 |
| CviQI | GTAC | 5 cut(s) | 170, 1604, 1962, 2018, 2243 |
| DraI | TTTAAA | 1 cut(s) | 1827 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1476 |
| DriI | GACNNNNNGTC | 1 cut(s) | 524 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1476 |
| Eam1104I | CTCTTC | 3 cut(s) | 7, 471, 768 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 524 |
| EarI | CTCTTC | 3 cut(s) | 7, 471, 768 |
| EciI | GGCGGA | 1 cut(s) | 2809 |
| Ecl136II | GAGCTC | 2 cut(s) | 1146, 1290 |
| Eco130I | CCWWGG | 6 cut(s) | 30, 163, 346, 521, 1879, 2322 |
| Eco147I | AGGCCT | 1 cut(s) | 367 |
| Eco24I | GRGCYC | 4 cut(s) | 928, 1148, 1292, 1998 |
| Eco31I | GGTCTC | 1 cut(s) | 1156 |
| Eco47I | GGWCC | 2 cut(s) | 518, 2879 |
| Eco47III | AGCGCT | 1 cut(s) | 2462 |
| Eco53kI | GAGCTC | 2 cut(s) | 1146, 1290 |
| Eco57I | CTGAAG | 2 cut(s) | 1344, 2918 |
| Eco72I | CACGTG | 1 cut(s) | 1376 |
| Eco81I | CCTNAGG | 2 cut(s) | 753, 2190 |
| Eco88I | CYCGRG | 2 cut(s) | 978, 2405 |
| EcoICRI | GAGCTC | 2 cut(s) | 1146, 1290 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2801 |
| EcoRI | GAATTC | 1 cut(s) | 1619 |
| EcoRII | CCWGG | 3 cut(s) | 1888, 2246, 2803 |
| EcoT14I | CCWWGG | 6 cut(s) | 30, 163, 346, 521, 1879, 2322 |
| EcoT22I | ATGCAT | 3 cut(s) | 108, 2151, 2707 |
| EcoT38I | GRGCYC | 4 cut(s) | 928, 1148, 1292, 1998 |
| ErhI | CCWWGG | 6 cut(s) | 30, 163, 346, 521, 1879, 2322 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2154, 2186 |
| FaqI | GGGAC | 5 cut(s) | 212, 1084, 1392, 2123, 2821 |
| FauI | CCCGC | 2 cut(s) | 655, 1624 |
| FauNDI | CATATG | 1 cut(s) | 2719 |
| FblI | GTMKAC | 1 cut(s) | 2066 |
| Fnu4HI | GCNGC | 3 cut(s) | 1716, 1728, 2049 |
| FokI | GGATG | 9 cut(s) | 1184, 1351, 1372, 1884, 2066, 2672, 2750, 2861, 2937 |
| FriOI | GRGCYC | 4 cut(s) | 928, 1148, 1292, 1998 |
| Fsp4HI | GCNGC | 3 cut(s) | 1716, 1728, 2049 |
| FspBI | CTAG | 8 cut(s) | 255, 431, 623, 812, 1022, 1149, 1490, 2983 |
| GlaI | GCGC | 1 cut(s) | 2462 |
| GluI | GCNGC | 3 cut(s) | 1716, 1728, 2049 |
| GsaI | CCCAGC | 1 cut(s) | 1749 |
| GsuI | CTGGAG | 4 cut(s) | 847, 1036, 1079, 1773 |
| HaeII | RGCGCY | 1 cut(s) | 2464 |
| HaeIII | GGCC | 6 cut(s) | 351, 367, 419, 1867, 2263, 2803 |
| HapII | CCGG | 5 cut(s) | 126, 234, 1609, 1850, 2546 |
| HgaI | GACGC | 1 cut(s) | 2421 |
| HhaI | GCGC | 1 cut(s) | 2463 |
| Hin6I | GCGC | 1 cut(s) | 2461 |
| HinP1I | GCGC | 1 cut(s) | 2461 |
| HincII | GTYRAC | 2 cut(s) | 2005, 2067 |
| HindII | GTYRAC | 2 cut(s) | 2005, 2067 |
| HpaI | GTTAAC | 1 cut(s) | 2005 |
| HpaII | CCGG | 5 cut(s) | 126, 234, 1609, 1850, 2546 |
| HphI | GGTGA | 6 cut(s) | 930, 1655, 2178, 2218, 2221, 2741 |
| HpyCH4III | ACNGT | 8 cut(s) | 60, 596, 1487, 1933, 2271, 2778, 2812, 2905 |
| HpyCH4IV | ACGT | 4 cut(s) | 846, 1281, 1375, 2844 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 736, 794, 923, 1724, 1894, 1976, 2628 |
| HpySE526I | ACGT | 4 cut(s) | 846, 1281, 1375, 2844 |
| HspAI | GCGC | 1 cut(s) | 2461 |
| KspAI | GTTAAC | 1 cut(s) | 2005 |
| LmnI | GCTCC | 7 cut(s) | 91, 235, 461, 1098, 1287, 1341, 1771 |
| Lsp1109I | GCAGC | 3 cut(s) | 1714, 1727, 2035 |
| MaeI | CTAG | 8 cut(s) | 255, 431, 623, 812, 1022, 1149, 1490, 2983 |
| MaeII | ACGT | 4 cut(s) | 846, 1281, 1375, 2844 |
| MaeIII | GTNAC | 2 cut(s) | 2227, 2905 |
| MflI | RGATCY | 3 cut(s) | 329, 858, 947 |
| MhlI | GDGCHC | 5 cut(s) | 928, 1148, 1292, 1346, 1998 |
| MlyI | GAGTC | 3 cut(s) | 152, 1079, 1298 |
| MmeI | TCCRAC | 2 cut(s) | 1749, 2460 |
| Mph1103I | ATGCAT | 3 cut(s) | 108, 2151, 2707 |
| MroXI | GAANNNNTTC | 2 cut(s) | 546, 2705 |
| MslI | CAYNNNNRTG | 2 cut(s) | 111, 1053 |
| MspA1I | CMGCKG | 1 cut(s) | 1718 |
| MspI | CCGG | 5 cut(s) | 126, 234, 1609, 1850, 2546 |
| MspR9I | CCNGG | 6 cut(s) | 234, 1609, 1890, 2248, 2546, 2805 |
| Mva1269I | GAATGC | 5 cut(s) | 310, 511, 2640, 2705, 2707 |
| MvaI | CCWGG | 3 cut(s) | 1890, 2248, 2805 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 736, 794, 923, 1724, 1894, 1976, 2628 |
| NciI | CCSGG | 3 cut(s) | 234, 1609, 2546 |
| NcoI | CCATGG | 3 cut(s) | 30, 163, 346 |
| NdeI | CATATG | 1 cut(s) | 2719 |
| NheI | GCTAGC | 1 cut(s) | 1021 |
| NlaIV | GGNNCC | 1 cut(s) | 1848 |
| NmuCI | GTSAC | 1 cut(s) | 2227 |
| NsiI | ATGCAT | 3 cut(s) | 108, 2151, 2707 |
| NspI | RCATGY | 3 cut(s) | 106, 2303, 2473 |
| OliI | CACNNNNGTG | 1 cut(s) | 1053 |
| PaeI | GCATGC | 1 cut(s) | 106 |
| PaeR7I | CTCGAG | 1 cut(s) | 2405 |
| PagI | TCATGA | 2 cut(s) | 286, 2028 |
| PceI | AGGCCT | 1 cut(s) | 367 |
| PciI | ACATGT | 1 cut(s) | 2469 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 43 |
| PctI | GAATGC | 5 cut(s) | 310, 511, 2640, 2705, 2707 |
| PdmI | GAANNNNTTC | 2 cut(s) | 546, 2705 |
| PfeI | GAWTC | 9 cut(s) | 383, 398, 569, 902, 1517, 1805, 1875, 2374, 2590 |
| PkrI | GCNGC | 3 cut(s) | 1717, 1729, 2050 |
| PleI | GAGTC | 3 cut(s) | 151, 1079, 1298 |
| PmaCI | CACGTG | 1 cut(s) | 1376 |
| PmlI | CACGTG | 1 cut(s) | 1376 |
| PpsI | GAGTC | 3 cut(s) | 151, 1079, 1298 |
| Ppu21I | YACGTR | 1 cut(s) | 1376 |
| PscI | ACATGT | 1 cut(s) | 2469 |
| PsiI | TTATAA | 2 cut(s) | 326, 2352 |
| Psp124BI | GAGCTC | 2 cut(s) | 1148, 1292 |
| Psp1406I | AACGTT | 1 cut(s) | 846 |
| Psp6I | CCWGG | 3 cut(s) | 1888, 2246, 2803 |
| PspCI | CACGTG | 1 cut(s) | 1376 |
| PspFI | CCCAGC | 1 cut(s) | 1745 |
| PspGI | CCWGG | 3 cut(s) | 1888, 2246, 2803 |
| PspN4I | GGNNCC | 1 cut(s) | 1848 |
| PspPI | GGNCC | 4 cut(s) | 350, 518, 2801, 2879 |
| PspXI | VCTCGAGB | 1 cut(s) | 2405 |
| PstNI | CAGNNNCTG | 2 cut(s) | 899, 2804 |
| PsuI | RGATCY | 3 cut(s) | 329, 858, 947 |
| RsaI | GTAC | 5 cut(s) | 171, 1605, 1963, 2019, 2244 |
| RsaNI | GTAC | 5 cut(s) | 170, 1604, 1962, 2018, 2243 |
| RseI | CAYNNNNRTG | 2 cut(s) | 111, 1053 |
| SacI | GAGCTC | 2 cut(s) | 1148, 1292 |
| SalI | GTCGAC | 1 cut(s) | 2065 |
| SatI | GCNGC | 3 cut(s) | 1716, 1728, 2049 |
| Sau96I | GGNCC | 4 cut(s) | 350, 518, 2801, 2879 |
| SchI | GAGTC | 3 cut(s) | 152, 1079, 1298 |
| ScrFI | CCNGG | 6 cut(s) | 234, 1609, 1890, 2248, 2546, 2805 |
| SduI | GDGCHC | 5 cut(s) | 928, 1148, 1292, 1346, 1998 |
| SfcI | CTRYAG | 1 cut(s) | 688 |
| Sfr274I | CTCGAG | 1 cut(s) | 2405 |
| SinI | GGWCC | 2 cut(s) | 518, 2879 |
| SlaI | CTCGAG | 1 cut(s) | 2405 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 111, 1053 |
| SmlI | CTYRAG | 2 cut(s) | 2405, 2448 |
| SmoI | CTYRAG | 2 cut(s) | 2405, 2448 |
| SphI | GCATGC | 1 cut(s) | 106 |
| SseBI | AGGCCT | 1 cut(s) | 367 |
| SsiI | CCGC | 5 cut(s) | 116, 662, 1631, 1718, 2820 |
| SspI | AATATT | 1 cut(s) | 1678 |
| SspMI | CTAG | 8 cut(s) | 255, 431, 623, 812, 1022, 1149, 1490, 2983 |
| SstI | GAGCTC | 2 cut(s) | 1148, 1292 |
| StuI | AGGCCT | 1 cut(s) | 367 |
| StyD4I | CCNGG | 6 cut(s) | 232, 1607, 1888, 2246, 2544, 2803 |
| StyI | CCWWGG | 6 cut(s) | 30, 163, 346, 521, 1879, 2322 |
| TaaI | ACNGT | 8 cut(s) | 60, 596, 1487, 1933, 2271, 2778, 2812, 2905 |
| TaiI | ACGT | 4 cut(s) | 849, 1284, 1378, 2847 |
| TaqI | TCGA | 6 cut(s) | 888, 1480, 1613, 2066, 2331, 2406 |
| TaqII | GACCGA | 1 cut(s) | 2014 |
| TatI | WGTACW | 2 cut(s) | 169, 2017 |
| TfiI | GAWTC | 9 cut(s) | 383, 398, 569, 902, 1517, 1805, 1875, 2374, 2590 |
| TseFI | GTSAC | 1 cut(s) | 2227 |
| TseI | GCWGC | 3 cut(s) | 1715, 1727, 2048 |
| Tsp45I | GTSAC | 1 cut(s) | 2227 |
| TspGWI | ACGGA | 1 cut(s) | 1924 |
| VpaK11BI | GGWCC | 2 cut(s) | 518, 2879 |
| XapI | RAATTY | 8 cut(s) | 119, 884, 1210, 1619, 1903, 2134, 2960, 2975 |
| XbaI | TCTAGA | 2 cut(s) | 1148, 1489 |
| XceI | RCATGY | 3 cut(s) | 106, 2303, 2473 |
| XhoI | CTCGAG | 1 cut(s) | 2405 |
| XmiI | GTMKAC | 1 cut(s) | 2066 |
| XmnI | GAANNNNTTC | 2 cut(s) | 546, 2705 |
| XspI | CTAG | 8 cut(s) | 255, 431, 623, 812, 1022, 1149, 1490, 2983 |
| Zsp2I | ATGCAT | 3 cut(s) | 108, 2151, 2707 |