AT5G16680

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000769
Physical Location & Seq
Reverse (-)
5467228 .. 5473592
6365 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16680.1

Sequence Viewer

Length: 3936 bp
ATGGCTGATAGAAGAGTTGGTAAGCGCCAAATGGGTCAGAGAGGTTTTTCAAAAGTGGAGTCTGGAACTTGTAATGTTTGTTCTGCTCCTTGTTCATCATGCATGCACCGTAATGTTGGTTTCACAGGATCAAAGTTGGACGAGTCATCAGATGAAAACTGTCATGGAGTAGTGGGCAGCCAGTGTTCTGTAAACGAGGATGATCTTTTGCCTTCTTCTATGGTTAATGCTCACAAGAGTTTAAATAACACTGCTAGTGAAGCAAGCAATCTTGTCAATTCCAGTCATGATGCTCTCTCTGAGAATGCTGAGAGTAAGGAAACTATAAGATGTTCTGGGATATCAGATGATTCCGGAGCTGCTGCAATGACTTCTAAGCCATCTCTTTCTGGGAGCAGGATGAAACATAAAGTTTCTGCATCAGCTAATATGTTAGATCAGAGCTCTAACTGTATAGAAGACCAGGAAGATGGGATCTTGTCTGCTGATCGAGCCAAACAGTTGAAGTCAGGTTGTTCTAATAACGAGATTGGCAATAAGGATTTAGCTGATGGTTCAGCTCTCAATTCTGATCCAATTCCGGGTGGATCTAGGAAAGATGAAGTGAAATTAGAATCTTTGCAGAATCCATCATCCAACCATGATGACAGAGTCAGTTCTGAGAAGGGAAATTTCAAGGAAAAATCAAGACCCGGGGGTAACAAAGAGAGACAGGAACCTTCAGTTGAAGGATCTACGCGTTCAGGAGAGAACAGGAAGGATGGTAAGTCAAGTAAGAGCTCTTCGTCCAACTCATCAGCTGTGTCTGAGAGCGAGAGTGATGATTCTGAAATGGTCGAACATGATGTAAAGGTTTGTGATATCTGTGGAGATGCTGGTCGTGAAGATTTACTCGCTATCTGTAGCGGATGCAGTGATGGGGCAGAACACACCTATTGCATGCGGGAAATGCTGGATGAAGTTCCTGAGGGTGATTGGCTATGTGAAGAATGTGCTGAGGAAGCTGAAAAGCAGAAGCAAGAAGCTAAGAGAAAAAGAGAAACTGAGGTAACCTTCAATACTTATAGCTCTGGCAAAAGGCACGCAGATAAAATTGAGGCCGCTCCAGATGCTAAAAGACAGGTGGTTGAGGCTTCAACTGGCTCACCCAAGAAATCCATTCTCCCCAGAGTAGGTGCGTTATCTCGGGAAACATCATTCAAGGGCTTAGACAGGTTAAGGGGAAAGCTAAATCATCAAACATCATTCAGTGATGACACAGAAAGTGCACGATCTGCTGGTTCACAGCTCCAACCTCCAAAAGGTGCATTTTTGAAATCCAGTTCCTTTAATTGTTCGAGCTCGAAACCGAAAGTGCAACTTATGGATGATGCTATTCACCCAAGACAGAAGACTGGCAAAGAAGATACTGCACTTGATTTAAAAGTGGGGGGTTTTAGAAATGTAGGCAAGTCAATGCCAAGTAGAACTACAGATGCAGGGAATTCTGGTGGAAGCGACTCACAAGCAAAAATGCTTGGATCAAAAGTTTATCATTCACAAGAAGGCAAAAGCTTAAAGCAAGTGAAAGATCGTAATAGAGAAGCTAATGCATCAGCATCCTCCATTGATCAGAAGTTAAAGTCACGCGGCAATTCGTCTGTTTCACATGCAAACAATAATCGTGATTTAAAGGGTTTGCAGTCTGATGGTAAACGAGGTAACTTGACGAAACAAGTCAGCAATCTAAGCCGAAACCGTCTAGAAAATTCAGTTGTTTCGGGAGGAGATATTTCCACAAATGAAAAGTGCAGTGCCAGCGAGCAAAGTTCAAGTCAAGCTGACTGTAAGGATGAACTGCCATCCACTTCTTGTACGGGTGAAGGCATGCCAAACCACGGTACTGTAGCTTTACAGGATGGATTGCCGCGGTCCAGGGTACCTAGAGAGGTAGGGAAGAAAAGCAAAGAAGCCTTCAGTAAACGCCAAAGGTCTAGCCTGTTGGCTGGTGCAAAAGGCTTACCATCATCTCAAAAGGGAGGTCAGACTGCAGAATCCAGCGACACCTCAGGCGTGTCTGATAGTGATCTCTCTACCACGAAAAACGTTAAGGAGGATTTAAATAAGGGTAATAGGTTACGAGCAGCAGTAGATGCTGCTCTGCGTAAAAAGCCCAGCTTTGGCAAGAACAGAGTATTGGAGCAATCTGATGCGTCATTGGTAGCTAATGTGGATTCTAGTTCTGAAAAGACTCTACGAAATCAATTGCCTTCAAAGATGCATAAGAATCATGTGTCACACGAAGGATTGCAAGGAGGGCATCCGATTTTATGGCCTACTTCTGATCCGTACAAGCAGACAATTGTAACAAATGAGAAGCAGCTTATATTCCCTGGTGCTGATACTATACCTTCACGATTGGTGGAACCTGAAGTCAGTTTTCCCGCCGTAAAGCCTGTCATGAGAGATTTGCCTTTAGTTCCCTCACCTGTTATGTTGAGAAGCTCAGCCATTCCGGACCATGAGTTTATATGGCAGGGGGACTTAGAGGTGCGGAAAATCATAAACCAGTCAGCTATGCATAGCGGAATTCAAGCACATTTATCAACCTTAGCATCACCCAGGGTTGCTGAAGTGGTGAATAAATTTCCAGAAACTTTCAGTTTGAATGAAGTACCTCGGAAGAGTACATGGCCTACACAATTTGAAAAATTAGGTACTAAGGAAGCCCATATAGCTCTATTCTTCTTTGCAAAGGACACTGAGAGTTATGAGAGAAATTATAAGCCTCTGGTAGATAACATGATCAAGAACGATTTAGCCCTGAAAGGAAATCTCGATAACGTTGACCTTTTGATTTTTGCATCCAACCAGCTTCCTTCGAATTGCCAGCGCTGGAACATGTTATATTTCCTTTGGGGTGTCTTCCAAGGAAGAAAAGAGACTAACCCACAAAAGAACACATCTTTGCCTACTTCAAATGTTTTGCCGCGTGACAGAGACCCCAAGGAGCTGTGTCAAACGAGTTCTCCTTCCAAGCATTTGGAGAAAGGGTCTTCTCTACGTGAGAGCTCCAGCAACGGAATTGAAACACGGAATGGGACAGATGCACGTAGTCATGAGAATCCAAATAACAGGGAATCCTCTATTGAGCGATCACCGAGCAAAAAGGAGGATATTGCTCTTAAAGTGGAAGAAGCAGGTGTGAATCACATCCCCCCTCAAGTTACTGGATCAAATTCTGGAGATAGTCTAGTGAGGAAGGTTCAGAAAGTCGAGGAACAAGAATTAGGTGGTAGGAAGGATCTGCCATTGACGGTCATGGGCTCAGGGATCCAGTCCCATGGGCAAGATAATCCTCTAGAGAAAGATCTCAACAGTAGTCAGGCTAGTCACAGGAAGCGTCCACTTTGGGAACTGAGTAACCCCGCTAACGAGAATTCATCTGCCATAAACCAGAAAGTGGAGCTCAATAATGACGGTTTATGCGAAGGATCTCCGAATAAGAAGCTGAAGACAGAAAACGGAAGCAGCAGCCTCTGCCGGGATACATCTGGTCACGATTCCGGGATAATGAAAAAGAGTCCAAAAGTCGTGTTCCCATTGGACTTGAATGACGACAGTGAAATGGTGGATAATCTCAGCCCACTAGGCAATGACGAGAATAACAACAATAGACGTTTAATAAGCGGTACAGTCCCGAATCTGGAGCTGGCATTAGGAGCTGAGGAAACAACAGAAGCAACAATGGGACTATTACCTTTCTTAAGCAGAAGTAGCAACTCTGGTGAACAAAGTAATAATAGTATGAATAAAGAAAAACAGAAAGCAGATGAAGAAGAAGAAGATGACGCCGAAGTGGCAGCTTCTCTGTCGTTATCACTCTCATTTCCGGGAACTGAGGAGAGGAAGAATGTGAATACTCCGTTGTTCCTGTTCAGAGACCTTCCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

1311

Amino Acids

142.24

Weight (kDa)

6.29

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 838 - 969 2.6e-47 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02890 AT3G02890 AT3G02890 AT3G02890 AT5G16680 AT5G16680
fragaria_vesca FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220
malus_domestica MD01G1238900.v1.1 MD07G1310800.v1.1
prunus_persica Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1
pyrus_communis pycom01g24640 pycom07g28310
rosa_chinensis RchiOBHm_Chr1g0384581
rosa_laevigata RLG00000026030
rosa_multiflora Rmu_sc0006005.1_g000016
rosa_roxburghii Rroxscaffold_4G00276570
rosa_rugosa Rorug01G0449400 Rorug01G0449500
rosa_samantha Rh1AG474300 Rh1BG432300 Rh1CG445500 Rh1DG464900
rosa_wichuraiana Rw1G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2763
AarI CACCTGC 1 cut(s) 3170
Acc36I ACCTGC 1 cut(s) 3170
Acc65I GGTACC 1 cut(s) 1918
AccB1I GGYRCC 1 cut(s) 1918
AccB7I CCANNNNNTGG 1 cut(s) 3442
AccBSI CCGCTC 1 cut(s) 1103
AccII CGCG 4 cut(s) 739, 1629, 1909, 2971
AccIII TCCGGA 2 cut(s) 353, 2494
AclI AACGTT 2 cut(s) 2085, 2823
AcsI RAATTY 7 cut(s) 670, 1483, 1747, 2568, 2624, 3217, 3418
AcuI CTGAAG 5 cut(s) 705, 1939, 2430, 2631, 3512
AcyI GRCGYC 1 cut(s) 3831
AfaI GTAC 8 cut(s) 1855, 1882, 1920, 2330, 2655, 2668, 2698, 3673
AfeI AGCGCT 1 cut(s) 2873
AfiI CCNNNNNNNGG 8 cut(s) 581, 1172, 1301, 1877, 2159, 3442, 3523, 3685
AflII CTTAAG 1 cut(s) 3745
AflIII ACRYGT 2 cut(s) 737, 2880
AjnI CCWGG 4 cut(s) 462, 1913, 2371, 2600
AjuI GAANNNNNNNTTGG 2 cut(s) 2159, 2191
Alw21I GWGCWC 6 cut(s) 446, 782, 1270, 1343, 3053, 3450
Alw26I GTCTC 4 cut(s) 703, 2915, 2973, 3915
Alw44I GTGCAC 1 cut(s) 1266
AlwNI CAGNNNCTG 1 cut(s) 3519
Ama87I CYCGRG 2 cut(s) 692, 1185
Aor13HI TCCGGA 2 cut(s) 353, 2494
Aor51HI AGCGCT 1 cut(s) 2873
AoxI GGCC 3 cut(s) 1098, 2312, 2672
ApaLI GTGCAC 1 cut(s) 1266
ApeKI GCWGC 9 cut(s) 177, 359, 362, 2123, 2135, 2359, 3510, 3513, 3842
ApoI RAATTY 7 cut(s) 670, 1483, 1747, 2568, 2624, 3217, 3418
ArsI GACNNNNNNTTYG 6 cut(s) 44, 76, 1798, 1830, 2005, 2037
Asp718I GGTACC 1 cut(s) 1918
AspLEI GCGC 2 cut(s) 27, 2874
AspS9I GGNCC 2 cut(s) 1911, 2497
AsuC2I CCSGG 6 cut(s) 582, 693, 694, 3524, 3547, 3873
AsuHPI GGTGA 9 cut(s) 983, 1137, 1370, 1871, 2457, 2589, 2629, 3129, 3779
AsuII TTCGAA 1 cut(s) 2861
AvaI CYCGRG 2 cut(s) 692, 1185
AvaII GGWCC 2 cut(s) 1911, 2497
AxyI CCTNAGG 2 cut(s) 966, 2047
BaeGI GKGCMC 1 cut(s) 1270
BamHI GGATCC 1 cut(s) 3312
BanI GGYRCC 1 cut(s) 1918
BanII GRGCYC 6 cut(s) 446, 782, 1343, 3053, 3308, 3450
BarI GAAGNNNNNNTAC 2 cut(s) 766, 798
BbsI GAAGAC 5 cut(s) 465, 1397, 2896, 3027, 3500
Bbv12I GWGCWC 6 cut(s) 446, 782, 1270, 1343, 3053, 3450
BbvCI CCTCAGC 2 cut(s) 996, 3705
BbvI GCAGC 9 cut(s) 189, 346, 349, 2122, 2135, 2371, 3522, 3525, 3854
BceAI ACGGC 1 cut(s) 2411
BciT130I CCWGG 4 cut(s) 464, 1915, 2373, 2602
BciVI GTATCC 1 cut(s) 3520
BclI TGATCA 2 cut(s) 1609, 2784
BcnI CCSGG 6 cut(s) 582, 693, 694, 3524, 3547, 3873
BcoDI GTCTC 4 cut(s) 703, 2915, 2973, 3915
BfmI CTRYAG 4 cut(s) 901, 1470, 1884, 2028
BfoI RGCGCY 2 cut(s) 28, 2875
BfrI CTTAAG 1 cut(s) 3745
BfuAI ACCTGC 1 cut(s) 3170
BfuI GTATCC 1 cut(s) 3520
BglI GCCNNNNNGGC 2 cut(s) 3630, 3839
BglII AGATCT 1 cut(s) 3349
BlpI GCTNAGC 1 cut(s) 2485
Bme18I GGWCC 2 cut(s) 1911, 2497
BmeT110I CYCGRG 2 cut(s) 692, 1185
BmgT120I GGNCC 2 cut(s) 1911, 2497
BmiI GGNNCC 4 cut(s) 717, 1920, 2406, 3314
BpiI GAAGAC 5 cut(s) 465, 1397, 2896, 3027, 3500
BpmI CTGGAG 4 cut(s) 1089, 3037, 3243, 3707
Bpu10I CCTNAGC 4 cut(s) 996, 2590, 3307, 3705
Bpu1102I GCTNAGC 1 cut(s) 2485
Bpu14I TTCGAA 1 cut(s) 2861
BpuEI CTTGAG 1 cut(s) 3186
BpuMI CCSGG 6 cut(s) 582, 693, 694, 3524, 3547, 3873
BsaAI YACGTR 2 cut(s) 3044, 3092
BsaBI GATNNNNATC 1 cut(s) 2064
BsaHI GRCGYC 1 cut(s) 3831
BsaI GGTCTC 2 cut(s) 2973, 3915
BsaWI WCCGGW 2 cut(s) 353, 2494
BsaXI ACNNNNNCTCC 4 cut(s) 2992, 3017, 3022, 3047
Bsc4I CCNNNNNNNGG 8 cut(s) 581, 1172, 1301, 1877, 2159, 3442, 3523, 3685
Bse1I ACTGG 8 cut(s) 181, 282, 1144, 1320, 1399, 2548, 3214, 3316
Bse21I CCTNAGG 2 cut(s) 966, 2047
Bse3DI GCAATG 2 cut(s) 372, 3640
Bse8I GATNNNNATC 1 cut(s) 2064
BseAI TCCGGA 2 cut(s) 353, 2494
BseBI CCWGG 4 cut(s) 464, 1915, 2373, 2602
BseJI GATNNNNATC 1 cut(s) 2064
BseLI CCNNNNNNNGG 8 cut(s) 581, 1172, 1301, 1877, 2159, 3442, 3523, 3685
BseMI GCAATG 2 cut(s) 372, 3640
BseNI ACTGG 8 cut(s) 181, 282, 1144, 1320, 1399, 2548, 3214, 3316
BseRI GAGGAG 2 cut(s) 1779, 3896
BseSI GKGCMC 1 cut(s) 1270
BseXI GCAGC 9 cut(s) 189, 346, 349, 2122, 2135, 2371, 3522, 3525, 3854
BseYI CCCAGC 1 cut(s) 2153
BsgI GTGCAG 2 cut(s) 1395, 1810
Bsh1236I CGCG 4 cut(s) 739, 1629, 1909, 2971
BshFI GGCC 3 cut(s) 1100, 2314, 2674
BshNI GGYRCC 1 cut(s) 1918
BsiHKAI GWGCWC 6 cut(s) 446, 782, 1270, 1343, 3053, 3450
BsiHKCI CYCGRG 2 cut(s) 692, 1185
BsiSI CCGG 7 cut(s) 354, 581, 693, 2495, 3523, 3546, 3872
BslFI GGGAC 5 cut(s) 2534, 3094, 3304, 3662, 3744
BslI CCNNNNNNNGG 8 cut(s) 581, 1172, 1301, 1877, 2159, 3442, 3523, 3685
BsmAI GTCTC 4 cut(s) 703, 2915, 2973, 3915
BsmFI GGGAC 5 cut(s) 2534, 3094, 3304, 3662, 3744
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 3 cut(s) 1100, 2314, 2674
Bso31I GGTCTC 2 cut(s) 2973, 3915
BsoBI CYCGRG 2 cut(s) 692, 1185
Bsp119I TTCGAA 1 cut(s) 2861
Bsp1286I GDGCHC 7 cut(s) 446, 782, 1270, 1343, 3053, 3308, 3450
Bsp13I TCCGGA 2 cut(s) 353, 2494
Bsp1720I GCTNAGC 1 cut(s) 2485
Bsp19I CCATGG 1 cut(s) 3322
BspANI GGCC 3 cut(s) 1100, 2314, 2674
BspEI TCCGGA 2 cut(s) 353, 2494
BspFNI CGCG 4 cut(s) 739, 1629, 1909, 2971
BspHI TCATGA 3 cut(s) 286, 2439, 3097
BspLI GGNNCC 4 cut(s) 717, 1920, 2406, 3314
BspMAI CTGCAG 1 cut(s) 2032
BspMI ACCTGC 1 cut(s) 3170
BspQI GCTCTTC 1 cut(s) 787
BspT104I TTCGAA 1 cut(s) 2861
BspT107I GGYRCC 1 cut(s) 1918
BspTI CTTAAG 1 cut(s) 3745
BspTNI GGTCTC 2 cut(s) 2973, 3915
BsrBI CCGCTC 1 cut(s) 1103
BsrDI GCAATG 2 cut(s) 372, 3640
BsrI ACTGG 8 cut(s) 181, 282, 1144, 1320, 1399, 2548, 3214, 3316
BssNI GRCGYC 1 cut(s) 3831
BssT1I CCWWGG 3 cut(s) 2908, 2985, 3322
Bst2UI CCWGG 4 cut(s) 464, 1915, 2373, 2602
Bst6I CTCTTC 3 cut(s) 7, 787, 2657
BstACI GRCGYC 1 cut(s) 3831
BstAFI CTTAAG 1 cut(s) 3745
BstAPI GCANNNNNTGC 3 cut(s) 1274, 2132, 3519
BstBAI YACGTR 2 cut(s) 3044, 3092
BstBI TTCGAA 1 cut(s) 2861
BstC8I GCNNGC 9 cut(s) 104, 265, 941, 1083, 1798, 1802, 1868, 2870, 3693
BstDSI CCRYGG 3 cut(s) 1876, 1907, 3322
BstEII GGTNACC 1 cut(s) 1048
BstENI CCTNNNNNAGG 1 cut(s) 1299
BstFNI CGCG 4 cut(s) 739, 1629, 1909, 2971
BstH2I RGCGCY 2 cut(s) 28, 2875
BstHHI GCGC 2 cut(s) 27, 2874
BstMAI GTCTC 4 cut(s) 703, 2915, 2973, 3915
BstNI CCWGG 4 cut(s) 464, 1915, 2373, 2602
BstNSI RCATGY 5 cut(s) 106, 943, 1652, 1870, 2884
BstPI GGTNACC 1 cut(s) 1048
BstSFI CTRYAG 4 cut(s) 901, 1470, 1884, 2028
BstSLI GKGCMC 1 cut(s) 1270
BstUI CGCG 4 cut(s) 739, 1629, 1909, 2971
BstV1I GCAGC 9 cut(s) 189, 346, 349, 2122, 2135, 2371, 3522, 3525, 3854
BstV2I GAAGAC 5 cut(s) 465, 1397, 2896, 3027, 3500
BstX2I RGATCY 7 cut(s) 474, 587, 731, 3283, 3312, 3349, 3473
BstXI CCANNNNNNTGG 3 cut(s) 470, 3022, 3323
BstYI RGATCY 7 cut(s) 474, 587, 731, 3283, 3312, 3349, 3473
Bsu36I CCTNAGG 2 cut(s) 966, 2047
BsuI GTATCC 1 cut(s) 3520
BsuRI GGCC 3 cut(s) 1100, 2314, 2674
BtgI CCRYGG 3 cut(s) 1876, 1907, 3322
BtsI GCAGTG 3 cut(s) 249, 919, 1798
BtsIMutI CAGTG 7 cut(s) 188, 249, 919, 1255, 1798, 2739, 3607
BveI ACCTGC 1 cut(s) 3170
Cac8I GCNNGC 9 cut(s) 104, 265, 941, 1083, 1798, 1802, 1868, 2870, 3693
CaiI CAGNNNCTG 1 cut(s) 3519
CciI TCATGA 3 cut(s) 286, 2439, 3097
CfoI GCGC 2 cut(s) 27, 2874
Cfr13I GGNCC 2 cut(s) 1911, 2497
Cfr42I CCGCGG 1 cut(s) 1910
Cfr9I CCCGGG 1 cut(s) 692
CseI GACGC 3 cut(s) 2181, 3371, 3839
Csp6I GTAC 8 cut(s) 1854, 1881, 1919, 2329, 2654, 2667, 2697, 3672
CviQI GTAC 8 cut(s) 1854, 1881, 1919, 2329, 2654, 2667, 2697, 3672
DraI TTTAAA 4 cut(s) 243, 1422, 1671, 2100
Eam1104I CTCTTC 3 cut(s) 7, 787, 2657
EarI CTCTTC 3 cut(s) 7, 787, 2657
Ecl136II GAGCTC 5 cut(s) 444, 780, 1341, 3051, 3448
Eco130I CCWWGG 3 cut(s) 2908, 2985, 3322
Eco24I GRGCYC 6 cut(s) 446, 782, 1343, 3053, 3308, 3450
Eco31I GGTCTC 2 cut(s) 2973, 3915
Eco32I GATATC 2 cut(s) 342, 862
Eco47I GGWCC 2 cut(s) 1911, 2497
Eco47III AGCGCT 1 cut(s) 2873
Eco53kI GAGCTC 5 cut(s) 444, 780, 1341, 3051, 3448
Eco57I CTGAAG 5 cut(s) 705, 1939, 2430, 2631, 3512
Eco81I CCTNAGG 2 cut(s) 966, 2047
Eco88I CYCGRG 2 cut(s) 692, 1185
Eco91I GGTNACC 1 cut(s) 1048
EcoICRI GAGCTC 5 cut(s) 444, 780, 1341, 3051, 3448
EcoNI CCTNNNNNAGG 1 cut(s) 1299
EcoO65I GGTNACC 1 cut(s) 1048
EcoRI GAATTC 3 cut(s) 1483, 2568, 3418
EcoRII CCWGG 4 cut(s) 462, 1913, 2371, 2600
EcoRV GATATC 2 cut(s) 342, 862
EcoT14I CCWWGG 3 cut(s) 2908, 2985, 3322
EcoT22I ATGCAT 4 cut(s) 104, 1594, 2262, 2562
EcoT38I GRGCYC 6 cut(s) 446, 782, 1343, 3053, 3308, 3450
ErhI CCWWGG 3 cut(s) 2908, 2985, 3322
FalI AAGNNNNNCTT 4 cut(s) 1344, 1376, 2141, 2173
FaqI GGGAC 5 cut(s) 2534, 3094, 3304, 3662, 3744
FauI CCCGC 3 cut(s) 936, 2431, 3415
FbaI TGATCA 2 cut(s) 1609, 2784
FriOI GRGCYC 6 cut(s) 446, 782, 1343, 3053, 3308, 3450
GlaI GCGC 2 cut(s) 26, 2873
GsaI CCCAGC 1 cut(s) 2157
GsuI CTGGAG 4 cut(s) 1089, 3037, 3243, 3707
HaeII RGCGCY 2 cut(s) 28, 2875
HaeIII GGCC 3 cut(s) 1100, 2314, 2674
HapII CCGG 7 cut(s) 354, 581, 693, 2495, 3523, 3546, 3872
HgaI GACGC 3 cut(s) 2181, 3371, 3839
HhaI GCGC 2 cut(s) 27, 2874
Hin1I GRCGYC 1 cut(s) 3831
Hin6I GCGC 2 cut(s) 25, 2872
HinP1I GCGC 2 cut(s) 25, 2872
HincII GTYRAC 1 cut(s) 2827
HindII GTYRAC 1 cut(s) 2827
HindIII AAGCTT 1 cut(s) 1552
HpaII CCGG 7 cut(s) 354, 581, 693, 2495, 3523, 3546, 3872
HphI GGTGA 9 cut(s) 983, 1137, 1370, 1871, 2457, 2589, 2629, 3129, 3779
Hpy166II GTNNAC 8 cut(s) 193, 1268, 1283, 1694, 1961, 2827, 3386, 3770
Hpy8I GTNNAC 8 cut(s) 193, 1268, 1283, 1694, 1961, 2827, 3386, 3770
HpyCH4IV ACGT 5 cut(s) 2085, 2823, 3043, 3091, 3658
HpySE526I ACGT 5 cut(s) 2085, 2823, 3043, 3091, 3658
Hsp92I GRCGYC 1 cut(s) 3831
HspAI GCGC 2 cut(s) 25, 2872
Kpn2I TCCGGA 2 cut(s) 353, 2494
KpnI GGTACC 1 cut(s) 1922
Ksp22I TGATCA 2 cut(s) 1609, 2784
KspI CCGCGG 1 cut(s) 1910
LguI GCTCTTC 1 cut(s) 787
Lsp1109I GCAGC 9 cut(s) 189, 346, 349, 2122, 2135, 2371, 3522, 3525, 3854
MaeII ACGT 5 cut(s) 2085, 2823, 3043, 3091, 3658
MbiI CCGCTC 1 cut(s) 1103
MfeI CAATTG 2 cut(s) 2243, 2340
MflI RGATCY 7 cut(s) 474, 587, 731, 3283, 3312, 3349, 3473
MhlI GDGCHC 7 cut(s) 446, 782, 1270, 1343, 3053, 3308, 3450
MluI ACGCGT 1 cut(s) 737
MlyI GAGTC 6 cut(s) 68, 152, 660, 1493, 2224, 3571
MmeI TCCRAC 5 cut(s) 117, 660, 813, 1315, 2871
Mph1103I ATGCAT 4 cut(s) 104, 1594, 2262, 2562
MroI TCCGGA 2 cut(s) 353, 2494
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 800, 1909
MspCI CTTAAG 1 cut(s) 3745
MspI CCGG 7 cut(s) 354, 581, 693, 2495, 3523, 3546, 3872
MunI CAATTG 2 cut(s) 2243, 2340
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 4 cut(s) 464, 1915, 2373, 2602
MvnI CGCG 4 cut(s) 739, 1629, 1909, 2971
NciI CCSGG 6 cut(s) 582, 693, 694, 3524, 3547, 3873
NcoI CCATGG 1 cut(s) 3322
NlaIV GGNNCC 4 cut(s) 717, 1920, 2406, 3314
NmuCI GTSAC 5 cut(s) 1623, 2274, 2972, 3371, 3536
NsiI ATGCAT 4 cut(s) 104, 1594, 2262, 2562
NspI RCATGY 5 cut(s) 106, 943, 1652, 1870, 2884
NspV TTCGAA 1 cut(s) 2861
PaeI GCATGC 3 cut(s) 106, 943, 1870
PagI TCATGA 3 cut(s) 286, 2439, 3097
PaqCI CACCTGC 1 cut(s) 3170
PasI CCCWGGG 1 cut(s) 2601
PciI ACATGT 1 cut(s) 2880
PciSI GCTCTTC 1 cut(s) 787
PcsI WCGNNNNNNNCGW 1 cut(s) 3465
PctI GAATGC 1 cut(s) 310
PflFI GACNNNGTC 1 cut(s) 650
PflMI CCANNNNNTGG 1 cut(s) 3442
PfoI TCCNGGA 2 cut(s) 3545, 3871
PleI GAGTC 6 cut(s) 67, 151, 659, 1493, 2224, 3570
PpsI GAGTC 6 cut(s) 67, 151, 659, 1493, 2224, 3570
Ppu21I YACGTR 2 cut(s) 3044, 3092
PscI ACATGT 1 cut(s) 2880
PsiI TTATAA 1 cut(s) 2763
Psp124BI GAGCTC 5 cut(s) 446, 782, 1343, 3053, 3450
Psp1406I AACGTT 2 cut(s) 2085, 2823
Psp6I CCWGG 4 cut(s) 462, 1913, 2371, 2600
PspEI GGTNACC 1 cut(s) 1048
PspFI CCCAGC 1 cut(s) 2153
PspGI CCWGG 4 cut(s) 462, 1913, 2371, 2600
PspN4I GGNNCC 4 cut(s) 717, 1920, 2406, 3314
PspPI GGNCC 2 cut(s) 1911, 2497
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
PstI CTGCAG 1 cut(s) 2032
PstNI CAGNNNCTG 1 cut(s) 3519
PsuI RGATCY 7 cut(s) 474, 587, 731, 3283, 3312, 3349, 3473
PsyI GACNNNGTC 1 cut(s) 650
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 8 cut(s) 1855, 1882, 1920, 2330, 2655, 2668, 2698, 3673
RsaNI GTAC 8 cut(s) 1854, 1881, 1919, 2329, 2654, 2667, 2697, 3672
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 5 cut(s) 446, 782, 1343, 3053, 3450
SacII CCGCGG 1 cut(s) 1910
SapI GCTCTTC 1 cut(s) 787
Sau96I GGNCC 2 cut(s) 1911, 2497
SchI GAGTC 6 cut(s) 68, 152, 660, 1493, 2224, 3571
SduI GDGCHC 7 cut(s) 446, 782, 1270, 1343, 3053, 3308, 3450
SfcI CTRYAG 4 cut(s) 901, 1470, 1884, 2028
Sfr303I CCGCGG 1 cut(s) 1910
SfuI TTCGAA 1 cut(s) 2861
SgrBI CCGCGG 1 cut(s) 1910
SinI GGWCC 2 cut(s) 1911, 2497
SmaI CCCGGG 1 cut(s) 694
SmiI ATTTAAAT 1 cut(s) 2100
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 2 cut(s) 3201, 3745
SmoI CTYRAG 2 cut(s) 3201, 3745
SphI GCATGC 3 cut(s) 106, 943, 1870
SstI GAGCTC 5 cut(s) 446, 782, 1343, 3053, 3450
StyI CCWWGG 3 cut(s) 2908, 2985, 3322
SwaI ATTTAAAT 1 cut(s) 2100
TaiI ACGT 5 cut(s) 2088, 2826, 3046, 3094, 3661
TaqI TCGA 7 cut(s) 490, 837, 1337, 1343, 2817, 2861, 3255
TatI WGTACW 1 cut(s) 2666
TauI GCSGC 4 cut(s) 1103, 1632, 1909, 2971
TscAI CASTG 7 cut(s) 188, 256, 919, 1255, 1798, 2746, 3607
TseFI GTSAC 5 cut(s) 1623, 2274, 2972, 3371, 3536
TseI GCWGC 9 cut(s) 177, 359, 362, 2123, 2135, 2359, 3510, 3513, 3842
Tsp45I GTSAC 5 cut(s) 1623, 2274, 2972, 3371, 3536
TspGWI ACGGA 5 cut(s) 2316, 3075, 3088, 3519, 3894
TspMI CCCGGG 1 cut(s) 692
TspRI CASTG 7 cut(s) 188, 256, 919, 1255, 1798, 2746, 3607
Tth111I GACNNNGTC 1 cut(s) 650
Van91I CCANNNNNTGG 1 cut(s) 3442
Vha464I CTTAAG 1 cut(s) 3745
VneI GTGCAC 1 cut(s) 1266
VpaK11BI GGWCC 2 cut(s) 1911, 2497
XagI CCTNNNNNAGG 1 cut(s) 1299
XapI RAATTY 7 cut(s) 670, 1483, 1747, 2568, 2624, 3217, 3418
XbaI TCTAGA 2 cut(s) 1741, 3340
XceI RCATGY 5 cut(s) 106, 943, 1652, 1870, 2884
XmaI CCCGGG 1 cut(s) 692
Zsp2I ATGCAT 4 cut(s) 104, 1594, 2262, 2562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.