Rorug01G0449400
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000769
Physical Location & Seq
Reverse (-)
54517160 .. 54518236
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0449400.1

Sequence Viewer

Length: 900 bp
ATGGCTTGCTCCTGTGACTTTGATGAAGTCGAATGTGTGGAAATCGAGTGCGCTAGCTGCGAATCCTGCCCCGATCAAGATTTGCGGCCAGTCGGTTTACTCTACGGCGACCAGTACGATGTCCCCAGCTGCATGGGCTGCTGTCCCTTTGGCTCCCAAGTTGTCTTCGTAGGCGGCGAGTTAGCACCGTGGTCTCATGATTTCAAACCCAGCCGAAAGGTTTTCGTCTATGACATTGAGGATGAGCTCCGGCTTCAGGGCTTGGAAAACGGCAACAACATCAAGGAGTTGGACAAAAGCTGCAACGGTCTTGCAAATATCCATCATGACATATATTATCCGCGGATGATGGAGATAGGAGGAGATCTCTATGCTCTCGGAGTTGTCAAATGTGACGTCAGTGTCTCTCAGATAGCTGATTCCGGCTTCGACAGTGAGGTTTTCCCCTTTGTGGGTGAGGCTTTAGTCGTGGACTTGGATAAACCTAGCAAGGAGAAGTTGGTGTTTGCCTATGGTCGTGATACTATATACGTGTGGCGATTGGGATTGACTGATGATCTGAAAGGTTCTTGTCTTACCAGATACGGGTCTGTGAATGTGAAACCCAGGTTGCTTGGCTTATTGGGACTTCAAACAAATGTATCTAAGCAGCATCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTGGTTAGAGCCAGGAGCTACCCAGTTGTTGAAGGTTTTATAAATTCAGAAGGGCTTGAGAAGGTGTGTGTTGTTATCATAGTATTCAAATATGAGTTTGATCCGAGAGCACAAGCCTTGGCCTACAAGTTCCTGTCTACCCGCAACTTTACCTTCATGCCCCATTGCAAGGAATGCTGCTTTGTCCGCCTGCTTAAATGCTTTGTGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

299

Amino Acids

33.52

Weight (kDa)

5.08

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02890 AT3G02890 AT3G02890 AT3G02890 AT5G16680 AT5G16680
fragaria_vesca FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220
malus_domestica MD01G1238900.v1.1 MD07G1310800.v1.1
prunus_persica Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1
pyrus_communis pycom01g24640 pycom07g28310
rosa_chinensis RchiOBHm_Chr1g0384581
rosa_laevigata RLG00000026030
rosa_multiflora Rmu_sc0006005.1_g000016
rosa_roxburghii Rroxscaffold_4G00276570
rosa_rugosa Rorug01G0449400 Rorug01G0449500
rosa_samantha Rh1AG474300 Rh1BG432300 Rh1CG445500 Rh1DG464900
rosa_wichuraiana Rw1G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
AasI GACNNNNNNGTC 1 cut(s) 401
AatII GACGTC 1 cut(s) 399
AccI GTMKAC 1 cut(s) 824
AccII CGCG 1 cut(s) 343
AciI CCGC 6 cut(s) 85, 174, 341, 343, 829, 874
AclWI GGATC 1 cut(s) 782
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 5 cut(s) 256, 451, 452, 585, 856
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 4 cut(s) 205, 632, 719, 775
AjnI CCWGG 2 cut(s) 605, 698
AluBI AGCT 6 cut(s) 57, 129, 247, 300, 416, 705
AluI AGCT 6 cut(s) 57, 129, 247, 300, 416, 705
Alw21I GWGCWC 2 cut(s) 249, 799
Alw26I GTCTC 3 cut(s) 198, 409, 662
AlwI GGATC 1 cut(s) 782
AoxI GGCC 2 cut(s) 86, 807
ApeKI GCWGC 6 cut(s) 57, 129, 138, 300, 649, 864
ApoI RAATTY 1 cut(s) 730
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 2 cut(s) 53, 897
AsuHPI GGTGA 1 cut(s) 467
AsuNHI GCTAGC 1 cut(s) 53
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 2 cut(s) 249, 799
BbvI GCAGC 6 cut(s) 44, 116, 125, 287, 661, 851
BccI CCATC 3 cut(s) 330, 343, 668
BceAI ACGGC 2 cut(s) 121, 286
BciT130I CCWGG 2 cut(s) 607, 700
BcoDI GTCTC 3 cut(s) 198, 409, 662
BfaI CTAG 4 cut(s) 54, 486, 668, 898
BglII AGATCT 1 cut(s) 364
BisI GCNGC 8 cut(s) 58, 86, 130, 139, 175, 301, 650, 865
BlsI GCNGC 8 cut(s) 59, 87, 131, 140, 176, 302, 651, 866
Bme1390I CCNGG 2 cut(s) 607, 700
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 607, 700
BmrI ACTGGG 1 cut(s) 704
BmsI GCATC 1 cut(s) 661
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 704
BpiI GAAGAC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 351, 383
BpuEI CTTGAG 1 cut(s) 764
Bsa29I ATCGAT 1 cut(s) 663
BsaAI YACGTR 1 cut(s) 532
BsaHI GRCGYC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 4 cut(s) 188, 341, 605, 804
Bsc4I CCNNNNNNNGG 5 cut(s) 256, 451, 452, 585, 856
Bse1I ACTGG 3 cut(s) 89, 112, 710
Bse3DI GCAATG 1 cut(s) 850
BseBI CCWGG 2 cut(s) 607, 700
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 4 cut(s) 188, 341, 605, 804
BseGI GGATG 2 cut(s) 247, 351
BseLI CCNNNNNNNGG 5 cut(s) 256, 451, 452, 585, 856
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 3 cut(s) 89, 112, 710
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 6 cut(s) 44, 116, 125, 287, 661, 851
BseYI CCCAGC 2 cut(s) 125, 209
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 2 cut(s) 88, 809
BshVI ATCGAT 1 cut(s) 663
BsiHKAI GWGCWC 2 cut(s) 249, 799
BsiSI CCGG 2 cut(s) 250, 423
BslFI GGGAC 3 cut(s) 107, 129, 639
BslI CCNNNNNNNGG 5 cut(s) 256, 451, 452, 585, 856
BsmAI GTCTC 3 cut(s) 198, 409, 662
BsmBI CGTCTC 1 cut(s) 662
BsmFI GGGAC 3 cut(s) 107, 129, 639
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 2 cut(s) 88, 809
Bso31I GGTCTC 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 249, 799
Bsp143I GATC 5 cut(s) 73, 364, 556, 664, 787
BspACI CCGC 6 cut(s) 85, 174, 341, 343, 829, 874
BspANI GGCC 2 cut(s) 88, 809
BspCNI CTCAG 1 cut(s) 421
BspDI ATCGAT 1 cut(s) 663
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 2 cut(s) 196, 325
BspLI GGNNCC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 782
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 850
BsrI ACTGG 3 cut(s) 89, 112, 710
BssECI CCNNGG 4 cut(s) 188, 341, 605, 804
BssMI GATC 5 cut(s) 73, 364, 556, 664, 787
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 804
Bst2UI CCWGG 2 cut(s) 607, 700
Bst4CI ACNGT 3 cut(s) 189, 308, 434
BstACI GRCGYC 1 cut(s) 396
BstAPI GCANNNNNTGC 2 cut(s) 138, 861
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 7, 55, 878
BstDEI CTNAG 2 cut(s) 408, 645
BstDSI CCRYGG 2 cut(s) 188, 341
BstF5I GGATG 2 cut(s) 247, 351
BstFNI CGCG 1 cut(s) 343
BstHHI GCGC 2 cut(s) 53, 897
BstKTI GATC 5 cut(s) 76, 367, 559, 667, 790
BstMAI GTCTC 3 cut(s) 198, 409, 662
BstMBI GATC 5 cut(s) 73, 364, 556, 664, 787
BstMWI GCNNNNNNNGC 7 cut(s) 57, 66, 135, 138, 861, 873, 894
BstNI CCWGG 2 cut(s) 607, 700
BstSCI CCNGG 2 cut(s) 605, 698
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 6 cut(s) 44, 116, 125, 287, 661, 851
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 1 cut(s) 364
Bsu15I ATCGAT 1 cut(s) 663
BsuRI GGCC 2 cut(s) 88, 809
BsuTUI ATCGAT 1 cut(s) 663
BtgI CCRYGG 2 cut(s) 188, 341
BtsCI GGATG 2 cut(s) 247, 351
BtsIMutI CAGTG 2 cut(s) 406, 439
Cac8I GCNNGC 3 cut(s) 7, 55, 878
CciI TCATGA 2 cut(s) 196, 325
CfoI GCGC 2 cut(s) 53, 897
Cfr42I CCGCGG 1 cut(s) 344
ClaI ATCGAT 1 cut(s) 663
Csp6I GTAC 1 cut(s) 115
CviAII CATG 4 cut(s) 133, 197, 326, 844
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 2 cut(s) 408, 645
DpnI GATC 5 cut(s) 75, 366, 558, 666, 789
DpnII GATC 5 cut(s) 73, 364, 556, 664, 787
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 86
EciI GGCGGA 1 cut(s) 863
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 605, 698
EcoT14I CCWWGG 1 cut(s) 804
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 804
Esp3I CGTCTC 1 cut(s) 662
FaeI CATG 4 cut(s) 136, 200, 329, 847
FaqI GGGAC 3 cut(s) 107, 129, 639
FatI CATG 4 cut(s) 132, 196, 325, 843
FauI CCCGC 1 cut(s) 836
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 8 cut(s) 58, 86, 130, 139, 175, 301, 650, 865
FokI GGATG 2 cut(s) 254, 358
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 8 cut(s) 58, 86, 130, 139, 175, 301, 650, 865
FspBI CTAG 4 cut(s) 54, 486, 668, 898
GlaI GCGC 2 cut(s) 52, 896
GluI GCNGC 8 cut(s) 58, 86, 130, 139, 175, 301, 650, 865
GsaI CCCAGC 2 cut(s) 129, 213
HaeIII GGCC 2 cut(s) 88, 809
HapII CCGG 2 cut(s) 250, 423
HhaI GCGC 2 cut(s) 53, 897
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 4 cut(s) 136, 200, 329, 847
Hin6I GCGC 2 cut(s) 51, 895
HinP1I GCGC 2 cut(s) 51, 895
HinfI GANTC 2 cut(s) 62, 419
HpaII CCGG 2 cut(s) 250, 423
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 3 cut(s) 98, 472, 825
Hpy188I TCNGA 5 cut(s) 380, 411, 561, 736, 792
Hpy188III TCNNGA 4 cut(s) 77, 197, 326, 518
Hpy8I GTNNAC 3 cut(s) 98, 472, 825
HpyAV CCTTC 4 cut(s) 713, 731, 742, 850
HpyCH4III ACNGT 3 cut(s) 189, 308, 434
HpyCH4IV ACGT 2 cut(s) 396, 531
HpyCH4V TGCA 4 cut(s) 132, 303, 314, 855
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 66, 135, 138, 861, 873, 894
HpyF3I CTNAG 2 cut(s) 408, 645
HpySE526I ACGT 2 cut(s) 396, 531
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 4 cut(s) 136, 200, 329, 847
HspAI GCGC 2 cut(s) 51, 895
KspI CCGCGG 1 cut(s) 344
Kzo9I GATC 5 cut(s) 73, 364, 556, 664, 787
LmnI GCTCC 4 cut(s) 14, 158, 252, 702
Lsp1109I GCAGC 6 cut(s) 44, 116, 125, 287, 661, 851
LweI GCATC 1 cut(s) 661
MaeI CTAG 4 cut(s) 54, 486, 668, 898
MaeII ACGT 2 cut(s) 396, 531
MaeIII GTNAC 2 cut(s) 14, 392
MalI GATC 5 cut(s) 75, 366, 558, 666, 789
MboI GATC 5 cut(s) 73, 364, 556, 664, 787
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 249, 799
MluCI AATT 1 cut(s) 730
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 4 cut(s) 232, 353, 430, 451
MseI TTAA 1 cut(s) 882
MspA1I CMGCKG 2 cut(s) 129, 343
MspI CCGG 2 cut(s) 250, 423
MspR9I CCNGG 2 cut(s) 607, 700
Mva1269I GAATGC 1 cut(s) 866
MvaI CCWGG 2 cut(s) 607, 700
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 7 cut(s) 57, 66, 135, 138, 861, 873, 894
NdeII GATC 5 cut(s) 73, 364, 556, 664, 787
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 4 cut(s) 136, 200, 329, 847
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 2 cut(s) 14, 392
PagI TCATGA 2 cut(s) 196, 325
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 866
PfeI GAWTC 2 cut(s) 62, 419
PkrI GCNGC 8 cut(s) 59, 87, 131, 140, 176, 302, 651, 866
Ppu21I YACGTR 1 cut(s) 532
PsiI TTATAA 1 cut(s) 728
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 605, 698
PspFI CCCAGC 2 cut(s) 125, 209
PspGI CCWGG 2 cut(s) 605, 698
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 129
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SacI GAGCTC 1 cut(s) 249
SacII CCGCGG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 882
SatI GCNGC 8 cut(s) 58, 86, 130, 139, 175, 301, 650, 865
Sau3AI GATC 5 cut(s) 73, 364, 556, 664, 787
ScrFI CCNGG 2 cut(s) 607, 700
SduI GDGCHC 2 cut(s) 249, 799
SfaNI GCATC 1 cut(s) 661
Sfr303I CCGCGG 1 cut(s) 344
SgrBI CCGCGG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
Sse9I AATT 1 cut(s) 730
SsiI CCGC 6 cut(s) 85, 174, 341, 343, 829, 874
SspMI CTAG 4 cut(s) 54, 486, 668, 898
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 605, 698
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 3 cut(s) 189, 308, 434
TaiI ACGT 2 cut(s) 399, 534
TaqI TCGA 4 cut(s) 30, 45, 429, 663
TasI AATT 1 cut(s) 730
TauI GCSGC 2 cut(s) 88, 177
TfiI GAWTC 2 cut(s) 62, 419
Tru1I TTAA 1 cut(s) 882
Tru9I TTAA 1 cut(s) 882
TscAI CASTG 2 cut(s) 406, 439
TseFI GTSAC 2 cut(s) 14, 392
TseI GCWGC 6 cut(s) 57, 129, 138, 300, 649, 864
Tsp45I GTSAC 2 cut(s) 14, 392
TspDTI ATGAA 2 cut(s) 39, 832
TspRI CASTG 2 cut(s) 406, 439
XapI RAATTY 1 cut(s) 730
XmiI GTMKAC 1 cut(s) 824
XspI CTAG 4 cut(s) 54, 486, 668, 898
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.