Rw1G039830
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000769
Physical Location & Seq
Forward (+)
67369426 .. 67376465
7040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039830.1

Sequence Viewer

Length: 4338 bp
ATGATATATAGCACATGTTCATGTGGTTCTTGCCTGAAAGCTACATTTGGGACCCTCTTGCTGGGAAAGATAGGGCTTTTATATTCAAAGGTGACTCTGGGGGATACACTTTGTGCTGTTCTTTCCTGTGCTTTTCTGCATCTTAGTGGAGCTCTTATGGGGTCAAAGGCTGTTGAGGTTTCTGATGAAACCTGTCATGTTAGCGGGGCGAATCAGTGTTCTGTCAATGTGAGTGGTAATTTGTCTTCTTTCAAGAGCAAGGCATGTGACAGTTTACAGCATACCACCAGTGAGACAAGTAACCTACTTAGTGTCAATTCGAGTTATGATTCTTTGTCTGAAAATGCTGAAAGCAGAGCACCCCTAAGGTTTTCTAATACTTCTGATGATTTAGAAGGTGTTGAGAAACTTCCAAATACATACATTGATTCTAAACTTGTTCAAGTTCATGAGGATAACATATCATGTGTAAGTAAAGCGAATGATACAAATACAGCATTCAGTAATCATAACAGGAATGTAGAGAGGAAGAACCTTGCTTGTAGTTTAGCTTCAGTCGGTAGTGTAGGCCCTGAAGAATTTGGAAAGCCACCCAATTCAGTCTTCTTGGAGATTCCTCATTTGAAAAATCCAAGTTCTGGCAGTGGCAGATCGAAGGAGAGAGTGCCAGAATTCTCTGGACTTATGGACTCATCATTAACAAAAGAAGCAATTACTAGCCAGAAATTTGCTTCTTATAAAGGTTTGGAGGCCTCTACAAAAATTTGTCCAAAGTTTGAAGCAGAGACCAGTGATGATGGCCAAGACTCAAAACAGGAAGCTTTGAAATTTTCAGATCATGGTGAACAGGATATTAAGTCTAGTCAGGTGGTTGGTGCAGCTGCTATGCAGCCTTTGCAATCCGTCAATGGTGATGACAGTGATGAATCTGATATTGTGGAGCATGATGTAAAGGTATGTGATATTTGTGGGGACGCAGGTCGTGAAGAATCGCTTGCCACTTGTAGTAGATGCAGCGACGGTGCAGAACACATCTATTGCATGCGAAAAATGCTTCGGAGAGTTCCTAAAGGTGACTGGTTGTGTGAGGAATGCAAGTTCACTGAGCAAACTGAAAACCAGAAGCAAGGTACAGATTTAGATGGAAACAGAATGAAGAAAGCCATCTTGAGTACCCAGCTCTCTAATAAGAGACGTGCAGACAATACAGAAGCGGCTCCTCCTTCTAAAAGGCAGACTCTTGAGACTCGGGTGGGATCACCAAAGCCGCCCAGCCCTAAGAGAACAGTTGCATTATCACGTGAGTCTTCATTCAAGAGTATGGATAAGGATAAGTTGAAGTCCGCTTATCAGACTTCTCTGTCCACTAATGATGTATCAGAAGCTACACGCTCTCCAACAACCGGTCCTCGGCTTCACACAGCCAAGGGTGCCTTGTTAAAGTCAAATTCCTTCAACATGTATACCAAAGCAAAGGTTAAACTTGTAGACAACATTGTTCCTCAGAAGCAGAAGGGGTCTAAAGAGCATGGTACTCTTGATATGAAGGAGAGGACAGCCAGAATGATGGGCAAATCTGTGTCATTCAGATCTCCTGACTCGGGGCGTTCCAATGTGTCCGAGTCAAAAGTTAAAATGCTTTCATCAAAATTTAACCCTCTTCAAGATCTAAAAGGAATGAAACAACTAAAAGAGCGGAGCACAGTTGAAAGAAAAAATTTGTCTAAACTAGAACGTCCTCCAGTTAGTTTGATAACATCAAGTGCTATTGTTTCAACACCTAAGGTTGACCAAGCATCCCGTGGTGATACCAGTTTGCTTTCATCTGTGAGCAACCTTCGAGAGCATAAGGCTCAGCTATCTGATGGAAAATTAAATACGTCATCAAAAGCAATAAGTAGTCTAACTCGTAAAGGTGTTGAAACTCAAAGTTCTCCAGGTGGTTCTTCACCTATTAGTGGAATGTGTAGTGCTGCTTCTGAAGAAAAGTCGAACCAAGTTATCTCTAACAATGAACCTTTATCCAGCTATTCTCAGCCTGTTGAGAAAGTACCTGCTGATGATGAAGGGAAATTAGAAGATACACTTCGATCATGGGAAATGACAAATCAGACTGATAAAACCAGGGAGACCTCTGTTCGCAGTAGGCCGATTGTTGCAGCTAGTTCAAAAAGTCTTTTCTGTTCAATTTGTAAGGAGATTGGTCATACTGCTGAATCTTGCAAAAGCGGGATTTCACAGGCTAGTGTTACTGATGTTTCTCCTCCAAGAAGTTACAGGGAGGAGGTGCCAAGAGATAGTAGGTTGAAAGATGCAATTCACGCAGCTTTTCTTAGAAAGCCTGAAATATACAAAAAGAAAACATTGCCAGATCAATCTGATGAATTGTCCGCATCCAACATGGAATCAAGTTCTGAAGTAGCTTCTCCAGAGTTTGTATCAAATATGTTGAATAATAACACATATACTGAAGGATCACATGATGAAGAAGCAATTCCTGGGAGTTCTACTTCCGATTTCTACAAGAATACATTACAGCCCTCTAATTCTGTGATTCCTTCCAGGGTGGTAGACTCTGGTTCTGTTCTTCCTTCTTTTGGGAAGTCAACAATGAGAGATTTGCAGAGACAGGCTTCAGTGGGGATGTCTGTTCTTATGAAGACAACAGCCATTCCAGAATATGAATACATCTGGCAGGGGAGCTTTGAACTGCAAAGAGGTGGAAATATTCTGGATCTATGCGGTGGCATTCAAGCTCATTTATCGACTTGTGCATCACCAAAAGTACTTGAAGTGGTGAACAAATTTCCGCACAAAGTTCCTCTGAAAGAAGTACCTCGTTTATGTGTATGGCCAGCACAATTTCATCAAAGTGGTGTTAGAGAGGACAATATAGCACTTTACTTCTTTGCCAAAGATCTTGAGAGTTATGAAAGGAACTACAAGATCCTTATAGATGCAATGATCAAGAATGATTTAGCCCTCAAAGGAAGGTTTGGTGGGGTTGAACTTCTGATACTCCCTTCAAATCAGCTTCCTGAGAAATCACAACGTTGGAATATGCTTTATTTCTTATGGGGTGTGTTCAGGGAGACAAGGGTGCATTACATAGATTCTACTAGAAAATTAGATGTTCCTGGCTTGAATGATGTCTCATTGGACAATGACACTCCCACTGTGATGGCTTTATCCAAGAACCTGCACGTTCCCGAGCATATAGGTGCAGCTGACAGGTTGTCTGGTGCAGCCTCTGCATCCAAGTCCCCAGAGCCTGTGGTTCTTACGGTTAGCAAGGATCTTGAGAGCAAAGATACGTATCCGGAAGAGATGTGTTTTGGTTCAAAAGAGAACTTGGTGCTACAGGATAGTAGGGTTGACTCCGAATACACAACAAACAATGCAGGCTTGTCTGGAGGAGTTAAACGCACCACTCCTTCACTGCAAGAAGTTTGCCTTCGAGAGAGCAGACTAGACACCGTAGGGCCTGTTGGTATGGAGAGAATTGCAGATAGAAAGAACATGGTTGGTATCCCAGGAGGTGATGAGGAGGTGATTTTGGAAAAAGTGAAAATAGACAGGGATGAATTTAAACAAGTGAAGGAGCTGAAGAGAGAGGATGGATCTAAAGAAATGGAAACAGCTTTTGTGAGAGACTTGACAACAAGAGTCAACTCTTGTCAGTCTAATAATAGAATACATCCCCATATAGATCTGTCAGAGCCAGCAGCTTCTTCCACCACAAATCAAGAAATGCCATGGAATGTTGTGAATACTATGCAAAGAGATGGACAGAGTGATAGTAAGAAGCCAAAACTAGATACTAGTGAACTACATGGTTTTAGTACTTCAAAGTCTGTTCTTTCTACTTCAGAAGAGGAGATGAATTGTCCTGAAGCATGTGATGAAAAAGTTATTCCAGAGGACTTGGGAACTACTGAAAGGCACTTCTTTCCTGTGGAATCAAGGAATGTCCAGGATTTTCAGATGGACAACAACTCTCTGCCATGGAAAAATTTCTCGTCAGGAAATGAGGATAAGTCTGACGGGTTTCCAAGTCTCGAGCTTGCTCTCAGGGCAGAAACAAAACCACCAAGTAAGGGAAATCTGCCTTTCTTTGTCGGGTTAGGTGGTGAGAGAGATAACCAGGATAGGTCTTTAGTAAAAACACTTGGTGAGAAAGAGGATGATGTCTCTGCTTCACTTTCACTCTCTCTTTCTTTCCCCTTCCCAGACAAGGAACAACCTGTGAAACCTGTTACAAAATCTGAGCAACTTCTGCCTGAAAGGCACCACGTGAATACATCACTGCTTCTGTTTGGGCGCTTTCCAGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

1445

Amino Acids

158.64

Weight (kDa)

6.09

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 898 - 1029 2.4e-49 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02890 AT3G02890 AT3G02890 AT3G02890 AT5G16680 AT5G16680
fragaria_vesca FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220
malus_domestica MD01G1238900.v1.1 MD07G1310800.v1.1
prunus_persica Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1
pyrus_communis pycom01g24640 pycom07g28310
rosa_chinensis RchiOBHm_Chr1g0384581
rosa_laevigata RLG00000026030
rosa_multiflora Rmu_sc0006005.1_g000016
rosa_roxburghii Rroxscaffold_4G00276570
rosa_rugosa Rorug01G0449400 Rorug01G0449500
rosa_samantha Rh1AG474300 Rh1BG432300 Rh1CG445500 Rh1DG464900
rosa_wichuraiana Rw1G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AasI GACNNNNNNGTC 1 cut(s) 1360
Acc36I ACCTGC 3 cut(s) 968, 2062, 3207
AccB1I GGYRCC 3 cut(s) 1430, 2287, 4287
AccB7I CCANNNNNTGG 1 cut(s) 638
AccBSI CCGCTC 1 cut(s) 1696
AccI GTMKAC 3 cut(s) 1463, 1488, 2571
AccIII TCCGGA 1 cut(s) 3319
AciI CCGC 9 cut(s) 204, 1214, 1268, 1344, 1696, 2229, 2391, 2742, 2810
AclI AACGTT 1 cut(s) 3052
AclWI GGATC 6 cut(s) 1264, 2482, 2742, 2941, 3303, 3628
AcoI YGGCCR 2 cut(s) 799, 2852
AcuI CTGAAG 9 cut(s) 537, 594, 2001, 2436, 2490, 2619, 3626, 3852, 3912
AcvI CACGTG 2 cut(s) 1301, 4294
AdeI CACNNNGTG 3 cut(s) 113, 4172, 4294
AfaI GTAC 7 cut(s) 1132, 1174, 1534, 2052, 2787, 2835, 3844
AfiI CCNNNNNNNGG 9 cut(s) 61, 638, 1403, 1410, 1601, 1958, 2597, 4097, 4234
AflIII ACRYGT 2 cut(s) 14, 1458
AgeI ACCGGT 1 cut(s) 1403
AhdI GACNNNNNGTC 1 cut(s) 3235
AhlI ACTAGT 1 cut(s) 3821
AjiI CACGTC 1 cut(s) 1196
AjnI CCWGG 8 cut(s) 1936, 2123, 2497, 2561, 3136, 3532, 3972, 4143
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AloI GAACNNNNNNTCC 2 cut(s) 1082, 1114
Alw21I GWGCWC 3 cut(s) 154, 361, 1703
AlwI GGATC 6 cut(s) 1264, 2482, 2742, 2941, 3303, 3628
AlwNI CAGNNNCTG 2 cut(s) 3251, 3272
Ama87I CYCGRG 4 cut(s) 1248, 1600, 3209, 4058
Aor13HI TCCGGA 1 cut(s) 3319
AoxI GGCC 6 cut(s) 568, 750, 799, 2147, 2852, 3482
AsiGI ACCGGT 1 cut(s) 1403
Asp700I GAANNNNTTC 2 cut(s) 2493, 4013
AspLEI GCGC 1 cut(s) 4323
AspS9I GGNCC 4 cut(s) 51, 569, 1406, 3482
AvaI CYCGRG 4 cut(s) 1248, 1600, 3209, 4058
AvaII GGWCC 2 cut(s) 51, 1406
AxyI CCTNAGG 2 cut(s) 365, 1782
BalI TGGCCA 2 cut(s) 801, 2854
BanI GGYRCC 3 cut(s) 1430, 2287, 4287
BanII GRGCYC 1 cut(s) 154
BarI GAAGNNNNNNTAC 6 cut(s) 229, 261, 535, 567, 1960, 1992
BbrPI CACGTG 2 cut(s) 1301, 4294
BbsI GAAGAC 4 cut(s) 237, 595, 1299, 2666
Bbv12I GWGCWC 3 cut(s) 154, 361, 1703
BccI CCATC 9 cut(s) 791, 1136, 1172, 1561, 1859, 3175, 3611, 3779, 3979
BciT130I CCWGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
BciVI GTATCC 3 cut(s) 97, 3327, 3539
BclI TGATCA 1 cut(s) 2964
BcuI ACTAGT 1 cut(s) 3821
BfaI CTAG 9 cut(s) 717, 861, 1730, 2163, 2244, 3120, 3470, 3815, 3822
BfmI CTRYAG 1 cut(s) 3359
BfoI RGCGCY 1 cut(s) 4324
BfuAI ACCTGC 3 cut(s) 968, 2062, 3207
BfuI GTATCC 3 cut(s) 97, 3327, 3539
BglI GCCNNNNNGGC 1 cut(s) 4285
BglII AGATCT 4 cut(s) 1589, 1666, 2917, 3709
BlpI GCTNAGC 1 cut(s) 1854
BmcAI AGTACT 2 cut(s) 2787, 3844
Bme1390I CCNGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
Bme18I GGWCC 2 cut(s) 51, 1406
BmeRI GACNNNNNGTC 1 cut(s) 3235
BmeT110I CYCGRG 4 cut(s) 1248, 1600, 3209, 4058
BmgBI CACGTC 1 cut(s) 1196
BmgT120I GGNCC 4 cut(s) 51, 569, 1406, 3482
BmiI GGNNCC 6 cut(s) 52, 53, 1218, 1432, 2289, 4289
BmrFI CCNGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
BmsI GCATC 8 cut(s) 148, 1001, 1805, 2302, 2402, 2783, 2947, 3263
BoxI GACNNNNGTC 1 cut(s) 978
BpiI GAAGAC 4 cut(s) 237, 595, 1299, 2666
BpmI CTGGAG 4 cut(s) 1725, 1920, 2412, 3432
Bpu1102I GCTNAGC 1 cut(s) 1854
BpuEI CTTGAG 4 cut(s) 1189, 1262, 2942, 3320
BsaAI YACGTR 3 cut(s) 1301, 3315, 4294
BsaBI GATNNNNATC 1 cut(s) 3315
BsaI GGTCTC 2 cut(s) 779, 2123
BsaJI CCNNGG 9 cut(s) 1409, 1425, 1801, 2124, 2498, 2562, 3532, 3755, 4004
BsaWI WCCGGW 2 cut(s) 1403, 3319
BsaXI ACNNNNNCTCC 2 cut(s) 1378, 1408
Bsc4I CCNNNNNNNGG 9 cut(s) 61, 638, 1403, 1410, 1601, 1958, 2597, 4097, 4234
Bse118I RCCGGY 1 cut(s) 1403
Bse1I ACTGG 5 cut(s) 288, 789, 1082, 1742, 1812
Bse21I CCTNAGG 2 cut(s) 365, 1782
Bse3DI GCAATG 2 cut(s) 2363, 2967
Bse8I GATNNNNATC 1 cut(s) 3315
BseAI TCCGGA 1 cut(s) 3319
BseBI CCWGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
BseDI CCNNGG 9 cut(s) 1409, 1425, 1801, 2124, 2498, 2562, 3532, 3755, 4004
BseGI GGATG 8 cut(s) 1796, 2393, 2649, 3254, 3586, 3622, 3697, 4189
BseJI GATNNNNATC 1 cut(s) 3315
BseLI CCNNNNNNNGG 9 cut(s) 61, 638, 1403, 1410, 1601, 1958, 2597, 4097, 4234
BseMI GCAATG 2 cut(s) 2363, 2967
BseMII CTCAG 7 cut(s) 1095, 1517, 1868, 2048, 3030, 4084, 4257
BseNI ACTGG 5 cut(s) 288, 789, 1082, 1742, 1812
BseRI GAGGAG 6 cut(s) 1209, 2253, 2297, 3429, 3560, 3890
BseYI CCCAGC 3 cut(s) 61, 1176, 1271
BsgI GTGCAG 6 cut(s) 897, 1044, 1218, 3185, 3243, 3264
BshFI GGCC 6 cut(s) 570, 752, 801, 2149, 2854, 3484
BshNI GGYRCC 3 cut(s) 1430, 2287, 4287
BshTI ACCGGT 1 cut(s) 1403
BsiHKAI GWGCWC 3 cut(s) 154, 361, 1703
BsiHKCI CYCGRG 4 cut(s) 1248, 1600, 3209, 4058
BsiSI CCGG 2 cut(s) 1404, 3320
BslFI GGGAC 3 cut(s) 64, 986, 3247
BslI CCNNNNNNNGG 9 cut(s) 61, 638, 1403, 1410, 1601, 1958, 2597, 4097, 4234
BsmBI CGTCTC 1 cut(s) 1186
BsmFI GGGAC 3 cut(s) 64, 986, 3247
BsmI GAATGC 3 cut(s) 497, 1097, 2748
BsnI GGCC 6 cut(s) 570, 752, 801, 2149, 2854, 3484
Bso31I GGTCTC 2 cut(s) 779, 2123
BsoBI CYCGRG 4 cut(s) 1248, 1600, 3209, 4058
Bsp1286I GDGCHC 3 cut(s) 154, 361, 1703
Bsp13I TCCGGA 1 cut(s) 3319
Bsp1720I GCTNAGC 1 cut(s) 1854
Bsp19I CCATGG 2 cut(s) 3755, 4004
BspACI CCGC 9 cut(s) 204, 1214, 1268, 1344, 1696, 2229, 2391, 2742, 2810
BspANI GGCC 6 cut(s) 570, 752, 801, 2149, 2854, 3484
BspCNI CTCAG 7 cut(s) 1096, 1516, 1867, 2047, 3031, 4083, 4258
BspEI TCCGGA 1 cut(s) 3319
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 6 cut(s) 52, 53, 1218, 1432, 2289, 4289
BspMI ACCTGC 3 cut(s) 968, 2062, 3207
BspPI GGATC 6 cut(s) 1264, 2482, 2742, 2941, 3303, 3628
BspT107I GGYRCC 3 cut(s) 1430, 2287, 4287
BspTNI GGTCTC 2 cut(s) 779, 2123
BsrBI CCGCTC 1 cut(s) 1696
BsrDI GCAATG 2 cut(s) 2363, 2967
BsrFI RCCGGY 1 cut(s) 1403
BsrI ACTGG 5 cut(s) 288, 789, 1082, 1742, 1812
BssAI RCCGGY 1 cut(s) 1403
BssECI CCNNGG 9 cut(s) 1409, 1425, 1801, 2124, 2498, 2562, 3532, 3755, 4004
BssNAI GTATAC 1 cut(s) 1464
BssT1I CCWWGG 3 cut(s) 1425, 3755, 4004
Bst1107I GTATAC 1 cut(s) 1464
Bst2UI CCWGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
Bst4CI ACNGT 8 cut(s) 272, 920, 1022, 1288, 1705, 3178, 3286, 3478
Bst6I CTCTTC 4 cut(s) 1665, 3318, 3602, 3867
BstAPI GCANNNNNTGC 3 cut(s) 895, 3251, 4276
BstBAI YACGTR 3 cut(s) 1301, 3315, 4294
BstC8I GCNNGC 6 cut(s) 996, 1043, 2856, 3403, 3723, 4065
BstDSI CCRYGG 3 cut(s) 1801, 3755, 4004
BstF5I GGATG 8 cut(s) 1796, 2393, 2649, 3254, 3586, 3622, 3697, 4189
BstH2I RGCGCY 1 cut(s) 4324
BstHHI GCGC 1 cut(s) 4323
BstMWI GCNNNNNNNGC 8 cut(s) 895, 1051, 1430, 2321, 3251, 4073, 4276, 4285
BstNI CCWGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
BstNSI RCATGY 5 cut(s) 18, 267, 1045, 1462, 3900
BstPAI GACNNNNGTC 1 cut(s) 978
BstSCI CCNGG 8 cut(s) 1936, 2123, 2497, 2561, 3136, 3532, 3972, 4143
BstSFI CTRYAG 1 cut(s) 3359
BstSNI TACGTA 1 cut(s) 3315
BstV2I GAAGAC 4 cut(s) 237, 595, 1299, 2666
BstX2I RGATCY 8 cut(s) 1589, 1666, 2734, 2917, 2946, 3295, 3620, 3709
BstXI CCANNNNNNTGG 2 cut(s) 1567, 3181
BstYI RGATCY 8 cut(s) 1589, 1666, 2734, 2917, 2946, 3295, 3620, 3709
BstZ17I GTATAC 1 cut(s) 1464
Bsu36I CCTNAGG 2 cut(s) 365, 1782
BsuI GTATCC 3 cut(s) 97, 3327, 3539
BsuRI GGCC 6 cut(s) 570, 752, 801, 2149, 2854, 3484
BtgI CCRYGG 3 cut(s) 1801, 3755, 4004
BtrI CACGTC 1 cut(s) 1196
BtsCI GGATG 8 cut(s) 1796, 2393, 2649, 3254, 3586, 3622, 3697, 4189
BtsI GCAGTG 3 cut(s) 649, 3437, 4304
BveI ACCTGC 3 cut(s) 968, 2062, 3207
Cac8I GCNNGC 6 cut(s) 996, 1043, 2856, 3403, 3723, 4065
CaiI CAGNNNCTG 2 cut(s) 3251, 3272
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 4323
Cfr10I RCCGGY 1 cut(s) 1403
Cfr13I GGNCC 4 cut(s) 51, 569, 1406, 3482
CseI GACGC 1 cut(s) 983
Csp6I GTAC 7 cut(s) 1131, 1173, 1533, 2051, 2786, 2834, 3843
CspAI ACCGGT 1 cut(s) 1403
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviQI GTAC 7 cut(s) 1131, 1173, 1533, 2051, 2786, 2834, 3843
DraI TTTAAA 1 cut(s) 3589
DraIII CACNNNGTG 3 cut(s) 113, 4172, 4294
DrdI GACNNNNNNGTC 1 cut(s) 1360
DriI GACNNNNNGTC 1 cut(s) 3235
DseDI GACNNNNNNGTC 1 cut(s) 1360
EaeI YGGCCR 2 cut(s) 799, 2852
Eam1104I CTCTTC 4 cut(s) 1665, 3318, 3602, 3867
Eam1105I GACNNNNNGTC 1 cut(s) 3235
EarI CTCTTC 4 cut(s) 1665, 3318, 3602, 3867
Ecl136II GAGCTC 1 cut(s) 152
Eco105I TACGTA 1 cut(s) 3315
Eco130I CCWWGG 3 cut(s) 1425, 3755, 4004
Eco147I AGGCCT 1 cut(s) 752
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 2 cut(s) 779, 2123
Eco47I GGWCC 2 cut(s) 51, 1406
Eco53kI GAGCTC 1 cut(s) 152
Eco57I CTGAAG 9 cut(s) 537, 594, 2001, 2436, 2490, 2619, 3626, 3852, 3912
Eco72I CACGTG 2 cut(s) 1301, 4294
Eco81I CCTNAGG 2 cut(s) 365, 1782
Eco88I CYCGRG 4 cut(s) 1248, 1600, 3209, 4058
EcoICRI GAGCTC 1 cut(s) 152
EcoO109I RGGNCCY 3 cut(s) 51, 569, 3482
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 8 cut(s) 1936, 2123, 2497, 2561, 3136, 3532, 3972, 4143
EcoT14I CCWWGG 3 cut(s) 1425, 3755, 4004
EcoT38I GRGCYC 1 cut(s) 154
ErhI CCWWGG 3 cut(s) 1425, 3755, 4004
Esp3I CGTCTC 1 cut(s) 1186
FalI AAGNNNNNCTT 8 cut(s) 978, 1010, 1418, 1450, 2070, 2102, 3438, 3470
FaqI GGGAC 3 cut(s) 64, 986, 3247
FauI CCCGC 2 cut(s) 197, 2222
FbaI TGATCA 1 cut(s) 2964
FblI GTMKAC 3 cut(s) 1463, 1488, 2571
FokI GGATG 8 cut(s) 1783, 2380, 2656, 3241, 3593, 3629, 3684, 4196
FriOI GRGCYC 1 cut(s) 154
FspBI CTAG 9 cut(s) 717, 861, 1730, 2163, 2244, 3120, 3470, 3815, 3822
GlaI GCGC 1 cut(s) 4322
GsaI CCCAGC 3 cut(s) 65, 1180, 1275
GsuI CTGGAG 4 cut(s) 1725, 1920, 2412, 3432
HaeII RGCGCY 1 cut(s) 4324
HaeIII GGCC 6 cut(s) 570, 752, 801, 2149, 2854, 3484
HapII CCGG 2 cut(s) 1404, 3320
HgaI GACGC 1 cut(s) 983
HhaI GCGC 1 cut(s) 4323
Hin6I GCGC 1 cut(s) 4321
HinP1I GCGC 1 cut(s) 4321
HincII GTYRAC 4 cut(s) 1789, 2607, 3376, 3670
HindII GTYRAC 4 cut(s) 1789, 2607, 3376, 3670
HindIII AAGCTT 1 cut(s) 819
HpaII CCGG 2 cut(s) 1404, 3320
Hpy99I CGWCG 1 cut(s) 1022
HpyCH4III ACNGT 8 cut(s) 272, 920, 1022, 1288, 1705, 3178, 3286, 3478
HpyCH4IV ACGT 8 cut(s) 1195, 1300, 1735, 1880, 3052, 3204, 3314, 4293
HpyF10VI GCNNNNNNNGC 8 cut(s) 895, 1051, 1430, 2321, 3251, 4073, 4276, 4285
HpySE526I ACGT 8 cut(s) 1195, 1300, 1735, 1880, 3052, 3204, 3314, 4293
HspAI GCGC 1 cut(s) 4321
KflI GGGWCCC 1 cut(s) 51
Kpn2I TCCGGA 1 cut(s) 3319
Ksp22I TGATCA 1 cut(s) 2964
LmnI GCTCC 6 cut(s) 149, 940, 1222, 1698, 2700, 3601
LweI GCATC 8 cut(s) 148, 1001, 1805, 2302, 2402, 2783, 2947, 3263
MaeI CTAG 9 cut(s) 717, 861, 1730, 2163, 2244, 3120, 3470, 3815, 3822
MaeII ACGT 8 cut(s) 1195, 1300, 1735, 1880, 3052, 3204, 3314, 4293
MaeIII GTNAC 7 cut(s) 91, 266, 299, 1073, 2248, 2273, 4255
MbiI CCGCTC 1 cut(s) 1696
MflI RGATCY 8 cut(s) 1589, 1666, 2734, 2917, 2946, 3295, 3620, 3709
MhlI GDGCHC 3 cut(s) 154, 361, 1703
MlsI TGGCCA 2 cut(s) 801, 2854
MluNI TGGCCA 2 cut(s) 801, 2854
MmeI TCCRAC 3 cut(s) 1421, 2421, 3035
Mox20I TGGCCA 2 cut(s) 801, 2854
MroI TCCGGA 1 cut(s) 3319
MroXI GAANNNNTTC 2 cut(s) 2493, 4013
MscI TGGCCA 2 cut(s) 801, 2854
MseI TTAA 9 cut(s) 698, 855, 1439, 1479, 1632, 1653, 1874, 3420, 3588
MslI CAYNNNNRTG 5 cut(s) 19, 144, 2871, 3179, 3219
Msp20I TGGCCA 2 cut(s) 801, 2854
MspA1I CMGCKG 2 cut(s) 881, 3227
MspI CCGG 2 cut(s) 1404, 3320
MspR9I CCNGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
Mva1269I GAATGC 3 cut(s) 497, 1097, 2748
MvaI CCWGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
MwoI GCNNNNNNNGC 8 cut(s) 895, 1051, 1430, 2321, 3251, 4073, 4276, 4285
NcoI CCATGG 2 cut(s) 3755, 4004
NlaIV GGNNCC 6 cut(s) 52, 53, 1218, 1432, 2289, 4289
NmeAIII GCCGAG 1 cut(s) 1390
NmuCI GTSAC 3 cut(s) 91, 266, 1073
NspI RCATGY 5 cut(s) 18, 267, 1045, 1462, 3900
PaeI GCATGC 1 cut(s) 1045
PaeR7I CTCGAG 1 cut(s) 4058
PagI TCATGA 1 cut(s) 448
PceI AGGCCT 1 cut(s) 752
PciI ACATGT 2 cut(s) 14, 1458
PctI GAATGC 3 cut(s) 497, 1097, 2748
PdmI GAANNNNTTC 2 cut(s) 2493, 4013
PflMI CCANNNNNTGG 1 cut(s) 638
PfoI TCCNGGA 1 cut(s) 3972
PinAI ACCGGT 1 cut(s) 1403
PmaCI CACGTG 2 cut(s) 1301, 4294
PmlI CACGTG 2 cut(s) 1301, 4294
Ppu21I YACGTR 3 cut(s) 1301, 3315, 4294
PpuMI RGGWCCY 1 cut(s) 51
PscI ACATGT 2 cut(s) 14, 1458
PshAI GACNNNNGTC 1 cut(s) 978
PsiI TTATAA 1 cut(s) 738
Psp124BI GAGCTC 1 cut(s) 154
Psp1406I AACGTT 1 cut(s) 3052
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 8 cut(s) 1936, 2123, 2497, 2561, 3136, 3532, 3972, 4143
PspCI CACGTG 2 cut(s) 1301, 4294
PspFI CCCAGC 3 cut(s) 61, 1176, 1271
PspGI CCWGG 8 cut(s) 1936, 2123, 2497, 2561, 3136, 3532, 3972, 4143
PspN4I GGNNCC 6 cut(s) 52, 53, 1218, 1432, 2289, 4289
PspPI GGNCC 4 cut(s) 51, 569, 1406, 3482
PspPPI RGGWCCY 1 cut(s) 51
PsrI GAACNNNNNNTAC 2 cut(s) 3000, 3032
PstNI CAGNNNCTG 2 cut(s) 3251, 3272
PsuI RGATCY 8 cut(s) 1589, 1666, 2734, 2917, 2946, 3295, 3620, 3709
PvuII CAGCTG 2 cut(s) 881, 3227
RsaI GTAC 7 cut(s) 1132, 1174, 1534, 2052, 2787, 2835, 3844
RsaNI GTAC 7 cut(s) 1131, 1173, 1533, 2051, 2786, 2834, 3843
RseI CAYNNNNRTG 5 cut(s) 19, 144, 2871, 3179, 3219
SacI GAGCTC 1 cut(s) 154
SaqAI TTAA 9 cut(s) 698, 855, 1439, 1479, 1632, 1653, 1874, 3420, 3588
Sau96I GGNCC 4 cut(s) 51, 569, 1406, 3482
ScaI AGTACT 2 cut(s) 2787, 3844
ScrFI CCNGG 8 cut(s) 1938, 2125, 2499, 2563, 3138, 3534, 3974, 4145
SduI GDGCHC 3 cut(s) 154, 361, 1703
SfaNI GCATC 8 cut(s) 148, 1001, 1805, 2302, 2402, 2783, 2947, 3263
SfcI CTRYAG 1 cut(s) 3359
Sfr274I CTCGAG 1 cut(s) 4058
SinI GGWCC 2 cut(s) 51, 1406
SlaI CTCGAG 1 cut(s) 4058
SmiMI CAYNNNNRTG 5 cut(s) 19, 144, 2871, 3179, 3219
SmlI CTYRAG 5 cut(s) 1168, 1241, 2921, 3299, 4058
SmoI CTYRAG 5 cut(s) 1168, 1241, 2921, 3299, 4058
SnaBI TACGTA 1 cut(s) 3315
SpeI ACTAGT 1 cut(s) 3821
SphI GCATGC 1 cut(s) 1045
SseBI AGGCCT 1 cut(s) 752
SsiI CCGC 9 cut(s) 204, 1214, 1268, 1344, 1696, 2229, 2391, 2742, 2810
SspI AATATT 1 cut(s) 2728
SspMI CTAG 9 cut(s) 717, 861, 1730, 2163, 2244, 3120, 3470, 3815, 3822
SstI GAGCTC 1 cut(s) 154
StuI AGGCCT 1 cut(s) 752
StyD4I CCNGG 8 cut(s) 1936, 2123, 2497, 2561, 3136, 3532, 3972, 4143
StyI CCWWGG 3 cut(s) 1425, 3755, 4004
TaaI ACNGT 8 cut(s) 272, 920, 1022, 1288, 1705, 3178, 3286, 3478
TaiI ACGT 8 cut(s) 1198, 1303, 1738, 1883, 3055, 3207, 3317, 4296
TaqI TCGA 8 cut(s) 320, 653, 1840, 1991, 2089, 2765, 3457, 4059
TatI WGTACW 2 cut(s) 2785, 3842
TauI GCSGC 2 cut(s) 1217, 1270
Tru1I TTAA 9 cut(s) 698, 855, 1439, 1479, 1632, 1653, 1874, 3420, 3588
Tru9I TTAA 9 cut(s) 698, 855, 1439, 1479, 1632, 1653, 1874, 3420, 3588
TseFI GTSAC 3 cut(s) 91, 266, 1073
Tsp45I GTSAC 3 cut(s) 91, 266, 1073
TspGWI ACGGA 1 cut(s) 892
Van91I CCANNNNNTGG 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 51, 1406
XceI RCATGY 5 cut(s) 18, 267, 1045, 1462, 3900
XcmI CCANNNNNNNNNTGG 1 cut(s) 1799
XhoI CTCGAG 1 cut(s) 4058
XmiI GTMKAC 3 cut(s) 1463, 1488, 2571
XmnI GAANNNNTTC 2 cut(s) 2493, 4013
XspI CTAG 9 cut(s) 717, 861, 1730, 2163, 2244, 3120, 3470, 3815, 3822
ZrmI AGTACT 2 cut(s) 2787, 3844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.