Rorug01G0449500
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000769
Physical Location & Seq
Reverse (-)
54526378 .. 54527873
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0449500.1

Sequence Viewer

Length: 555 bp
ATGCAAAGGAACAGTCCCTCAAGATTACCAGACGCCGTTGTTGTTTCAAGTGCTTTTCCTCAAGACTGTGTGGAGAATTTGTATGCAAAGTCGGTTGGAGTTCCCGTGTACGAGCGAGACGATTGGTCAAGACAACTGACATTGGGCTACATTAATCTTATTGATGTAAGCGGTAGCCATAGTGAGAATGTCTTATGGCCATGCATGTCACTCAAAAAAGGTTCTTATCTTACCAGATACGGGTCTGTGGATGTGAAACCCAGGTTGCTTGGCTTATTGGGAAATTTGTGTGAAGTATCTAAGCAGCTTCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTGGTTAGGGCTAGGAGCTACCCAGTTGTTGAACGTACTATAAATTCAGAAGGGCTTGAGAAGGTGTGTGTTGTTATCATAGTATTCAAATATGAGTTTGATCCGAGAGCACAAGCCTTGCCCTACAAGTTGCTGTGTACCCGCACCTTTACCTTCATGCCCCATTGCGAGGAATCCTGCTTTGTCCGCCTGCTTAAATGCTTTGTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

184

Amino Acids

20.82

Weight (kDa)

8.56

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02890 AT3G02890 AT3G02890 AT3G02890 AT5G16680 AT5G16680
fragaria_vesca FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220
malus_domestica MD01G1238900.v1.1 MD07G1310800.v1.1
prunus_persica Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1
pyrus_communis pycom01g24640 pycom07g28310
rosa_chinensis RchiOBHm_Chr1g0384581
rosa_laevigata RLG00000026030
rosa_multiflora Rmu_sc0006005.1_g000016
rosa_roxburghii Rroxscaffold_4G00276570
rosa_rugosa Rorug01G0449400 Rorug01G0449500
rosa_samantha Rh1AG474300 Rh1BG432300 Rh1CG445500 Rh1DG464900
rosa_wichuraiana Rw1G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 171, 484, 529
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 3 cut(s) 76, 283, 385
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 3 cut(s) 110, 379, 481
AfiI CCNNNNNNNGG 2 cut(s) 240, 511
AgsI TTSAA 3 cut(s) 48, 374, 430
AhdI GACNNNNNGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 307, 360, 552
AluI AGCT 3 cut(s) 307, 360, 552
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 111, 317
AlwI GGATC 1 cut(s) 437
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 3 cut(s) 76, 283, 385
ArsI GACNNNNNNTTYG 1 cut(s) 30
AseI ATTAAT 1 cut(s) 153
BalI TGGCCA 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 111, 317
BfaI CTAG 3 cut(s) 323, 354, 553
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 262
BmeRI GACNNNNNGTC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 262
BmrI ACTGGG 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 359
BpuEI CTTGAG 3 cut(s) 4, 45, 419
Bsa29I ATCGAT 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 260
BsaXI ACNNNNNCTCC 4 cut(s) 65, 90, 95, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 511
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 1 cut(s) 262
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 240, 511
BseMI GCAATG 1 cut(s) 505
BseNI ACTGG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 316
BshFI GGCC 1 cut(s) 199
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 240, 511
BsmAI GTCTC 2 cut(s) 111, 317
BsmBI CGTCTC 2 cut(s) 111, 317
BsnI GGCC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 2 cut(s) 319, 442
BspACI CCGC 3 cut(s) 171, 484, 529
BspANI GGCC 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 318
BspPI GGATC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 505
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 2 cut(s) 319, 442
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 14, 68
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 2 cut(s) 322, 445
BstMAI GTCTC 2 cut(s) 111, 317
BstMBI GATC 2 cut(s) 319, 442
BstMWI GCNNNNNNNGC 2 cut(s) 528, 549
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 318
BsuRI GGCC 1 cut(s) 199
BsuTUI ATCGAT 1 cut(s) 318
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 533
ClaI ATCGAT 1 cut(s) 318
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 109, 378, 480
CviAII CATG 3 cut(s) 201, 205, 499
CviQI GTAC 3 cut(s) 109, 378, 480
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 321, 444
DpnII GATC 2 cut(s) 319, 442
DriI GACNNNNNGTC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 197
Eam1105I GACNNNNNGTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 206
Esp3I CGTCTC 2 cut(s) 111, 317
FaeI CATG 3 cut(s) 204, 208, 502
FaiI YATR 9 cut(s) 84, 180, 196, 202, 206, 383, 422, 435, 500
FatI CATG 3 cut(s) 200, 204, 498
FauI CCCGC 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 3 cut(s) 323, 354, 553
GluI GCNGC 1 cut(s) 305
HaeIII GGCC 1 cut(s) 199
HgaI GACGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 204, 208, 502
HinfI GANTC 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 109, 480
Hpy188I TCNGA 2 cut(s) 391, 447
Hpy188III TCNNGA 3 cut(s) 21, 62, 129
Hpy8I GTNNAC 2 cut(s) 109, 480
HpyAV CCTTC 3 cut(s) 386, 397, 505
HpyCH4III ACNGT 2 cut(s) 14, 68
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 3 cut(s) 4, 86, 204
HpyF10VI GCNNNNNNNGC 2 cut(s) 528, 549
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 204, 208, 502
Kzo9I GATC 2 cut(s) 319, 442
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 7 cut(s) 42, 247, 247, 274, 378, 532, 545
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 3 cut(s) 323, 354, 553
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 207
MalI GATC 2 cut(s) 321, 444
MboI GATC 2 cut(s) 319, 442
MhlI GDGCHC 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 199
MluCI AATT 3 cut(s) 76, 283, 385
MluNI TGGCCA 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 3 cut(s) 28, 69, 505
Mox20I TGGCCA 1 cut(s) 199
Mph1103I ATGCAT 1 cut(s) 206
MscI TGGCCA 1 cut(s) 199
MseI TTAA 2 cut(s) 153, 537
Msp20I TGGCCA 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 528, 549
NdeII GATC 2 cut(s) 319, 442
NlaIII CATG 3 cut(s) 204, 208, 502
NmuCI GTSAC 1 cut(s) 207
NsiI ATGCAT 1 cut(s) 206
NspI RCATGY 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 1 cut(s) 515
PkrI GCNGC 1 cut(s) 306
PshBI ATTAAT 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
RsaI GTAC 3 cut(s) 110, 379, 481
RsaNI GTAC 3 cut(s) 109, 378, 480
SaqAI TTAA 2 cut(s) 153, 537
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 319, 442
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 454
SetI ASST 9 cut(s) 223, 266, 309, 362, 379, 408, 491, 497, 554
SmlI CTYRAG 3 cut(s) 19, 60, 398
SmoI CTYRAG 3 cut(s) 19, 60, 398
Sse9I AATT 3 cut(s) 76, 283, 385
SsiI CCGC 3 cut(s) 171, 484, 529
SspMI CTAG 3 cut(s) 323, 354, 553
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 14, 68
TaiI ACGT 1 cut(s) 379
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 76, 283, 385
TfiI GAWTC 1 cut(s) 515
Tru1I TTAA 2 cut(s) 153, 537
Tru9I TTAA 2 cut(s) 153, 537
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 487
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 3 cut(s) 76, 283, 385
XceI RCATGY 1 cut(s) 208
XspI CTAG 3 cut(s) 323, 354, 553
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.