Rh1CG445500
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000769
Physical Location & Seq
Reverse (-)
69676070 .. 69683781
7712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG445500.1

Sequence Viewer

Length: 3681 bp
ATGCAGGAGAGAGTGCCAGAATCCTCTGGACTTATGGACTCATCATTAACAAAAGAAGCAATTACTAGCCAGAAATTTGCATCTTATAAAGGTTTGGAGGCCTCTACAAAAATTTGTCCAAAGTTTGAAGCAGAGACCAGTGATGATGGCCAAGACTCAAAACAGGAAGCTTTGAAATGTTCAGATCATGGTGAACAGGATATTAAGTCTAGTCAGGTGGTTGACGCAGCTGCTATGCAGCCTTTGCAATCCGTCAATGGTGATGACAGTGATGAATCTGATATTGTGGAGCATGATGTAAAGGTATGTGATATTTGTGGGGACGCAGGTCGTGAAGAATCGCTTGCCACTTGTAGTAGATGCAGCGACGGTGCAGAACACATCTATTGCATGCGAAAAATGCTTCGGAGAGTTCCTAAAGGTGACTGGTTGTGTGAGGAATGCAAGTTCACTGAGCAAACTGAAAACCAGAAGCAAGGTACAGATTTAGATGGAAACAGAATGAAGAAAGCCATCTTGAGTACACAGCTCTCTAATAAGAGACGTGCAGACAATACAGAAGCGGCTCCTTCTTCTAAAAGGCAGACTCTTGAGACTCGGGTGGGATCACCAAAGCCGCCCAGCCCTAAGAGAACAGTTGCATTATCACGTGAGTCTTCATTCAAGAGTATGGATAAGGATAAGTTGAAGTCCACTTATCAGACTTCTCTGTCCACTAATGATGTATCAGAAGCTGCACGCTCTCCAACAACCGGTCCTCAGCTTCACACAGCCAAGGGTGCATTGTTAAAGTCAAATTCCTTCAACATGTATACCAAGGCAAAGGTTAAACTTGTAGACAACATTGTTCCTCAGAAGCAGAAGGGGTCTAAAGAGCATGGTACTCTTGATATGAAGGAGAGGACAGCCAGAATGATGGGCAAATCTGTGTCATTCAGATCTCCTGACTCGGGGCGTTCCAATGTGTCCGAGTCAAAAGTTAAAATGCTTTCATCAAAATTTAACCCTCTTCAAGATCTAAAAGGAATGAAACAACTAAAAGAGCGGAGCACAGTTGAAAGAAAAAATTTGTCTAAACTAGAACGTCCTCCAGTTAGTTTGATAACATCAAGTGCTATTGTTTCAACACCTAAGGTTGACCAAGCATCCCGTGGTGATACCAGTTTGCTTTCATCTGTGAGCAACCTTCGAGAGAATAAGGCTCAGCTATCTGATGGAAAATTAAATACGTCATCAAAAGCAATAAGTAGTCTAACTCGTAAAGGTGTTGAAAGTTCTCCAGGTGGTTCTTCACCTATTAGTGGAATGTGTAGTGCTGCTTCTGAAGAAAAGTCGAACCAAGTTATCTCTAACAATGAACCTTTATCCAGCTATTCTCAGCCTGTTGAGAAAGTACCTGCTGATGATGAAGGGAAATTAGAAGATACACTTCGATCATGGGAAATGACAAATCAGACTGATAAAACCAGGGAGACCTCTGTTCGCAGTAGGCCGATTGTTGCAGCTAGTTCAAAAAGTCTTTTCTGTTCAATTTGTAAGGAGATTGGTCATACTGCTGAATCTTGCAAAAGCGGGATTTCACAGGCTAGTGTTACTGATGTTTCTCCTCCAAGAAGTTACAGGGAGGAGGTGCCAAGAGGTAGTAGGTTGAAAGCTGCAATTCACGCCGCTATGCTTAGAAAGCCTGAAATATACAAAAAGAAAACATTACCAGATCAATCTGATGAATTGTCCGCATCCAACATGGAATCAAGTTCTGAAGTAGCTTCTCCAGAGTTTGTATCAAATATATTGAATAATAACACATATACTGAAGGATCACATGATGGAGAAGCAATTCCTGGGAGTTCTACTTCCGATTTCTACAAGAATACATTACAGCCCGCTAATTCTGTGATTCCTTCCAGGGTGGTAGACTCTGGTTCTGTTCTTCCTTCTTTTGGGAAGTCAACAATGAGAGATTTGCAGAGACAGGCTTCAGTGGGGATGTCTGTTCTTATGAAGACAACAGCCATTCCAGAATATGAATACATCTGGCAGGGGAGCTTTGAACTGCAAAGAGGTGGAAATATTCTGGATCTATGCGGTGGAATTCAAGCTCATTTATCGACTTGTGCATCACCAAAAGTACTTGAAGTGGTGAACAAATTTCCGCACAAAGTTCCTCTGAAAGAAGTACCTCGTTTAAGTGTATGGCCAGCACAATTTCATCAAAGTGGTGTTAGAGAGGACAATATAGCACTTTACTTCTTTGCCAAAGATCTTGAGAGTTATGAAAGGAACTACAAGATCCTTATAGATGCAATGATCAAGAATGATTTAGCCCTCAAAGGAAAGTTTGGTGGGGTTGAACTTCTGATACTCCCTTCAAATCAGCTTCCTGAGAAATCACAACGTTGGAATATGCTTTATTTCTTATGGGGTGTGTTCAGGGAGACAAGAGTGCATTACATAGATTCTACTAGAAAATTAGATGTTCCTGGCTTGAATGATGTCTCATTGGACAATGACACCCCCACTGTGATGGCTTTATCCAAGAACCTGCACGTTCCCGAGCATATAGGTGCAGCTGACAGGTTGTCTGGTGCAGCCTCTGCATCCAAGTCCCCAGAGCCTGTGGTTCTTACGGTTAGCAAGGATCTTGAGAGCAAAGATACGTACCCGGAAGAGATGTGTTTTGGTTCAAAAGAGAACTTGGTGCTACAGGATAGTAGGGTTGACTCCGAATACACAACAAACAATGCAGGCTTGTCTGGAGGAGTTAAACGCACCACTCCTTCACTGCAAGAAGGTGGCCTTCGAGAGAGCAGACTAGACACTGTAGGGCCTGTTGGTATGGAGAGAATTGCAGATAGAAAGAACATGGTTGGTGTCCCAGGAGGTGACGAGGAGGTGATTTTGAAAAAAGTGAAAATAGACAGGGATGAATTTAAACAAGTGAAGGAGCTGAAGAGAGAGGATGGATCTAAAGAAATGGAAACAGCTTTTGTGAGAGACTTGACAACAAGAGTCAACTCTTGTCAGTCTAATAATAGAATACATCCCCATATAGATCTGTCTGAGCCAGCAGCTTCTTCCACCACAAATCAAGAAATGCCATGGAATGTTGTGAATACTATGCAAAGAGATGGACAGAGTGATAGTAAGAAGCCAAAACTAGATACTAGTGAACTACATGGTTTTAGTACTTCAAAGTCTGTTCTTTCTACTTCAGAAGAGGAGATGAATTGTCCTGAAGCATGTGATGAAAAAGTTATTCCAGAGGACTTGGGAACTACTGAAAGGCACTTCTTTCCTGTGGAATCAAGGAATGTCCAGGATTTTCAGATGGACAACAACTCTCTGCCATGGAAAAATTTCTCGTCAGGAAATGAGGATAAGTCTGACGGGTTTCCAAGTCTCGAGCTTGCTCTCAGGGCAGAAACAAAACCACCAAGTAAGGGAAATCTGCCTTTCTTTGTCGGGTTAGGTGATGAGAGAGATAACCAGGATAGGTCTTTAGAAAAAACACTTGGTGAGAAAGAGGATGATGTCTCTGCTTCACTTTCACTCTCTCTTTCTTTCCCCTTCCCAGACAAGGAACAACCTGTGAAACCTGTAACAAAATCTGAGCAACTTCTGCCTGAAAGGCACCACGTGAATACATCACTGCTTCTGTTTGGGCGCTTTCCAGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

1226

Amino Acids

135.14

Weight (kDa)

6.12

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 679 - 810 4.4e-50 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02890 AT3G02890 AT3G02890 AT3G02890 AT5G16680 AT5G16680
fragaria_vesca FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220
malus_domestica MD01G1238900.v1.1 MD07G1310800.v1.1
prunus_persica Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1
pyrus_communis pycom01g24640 pycom07g28310
rosa_chinensis RchiOBHm_Chr1g0384581
rosa_laevigata RLG00000026030
rosa_multiflora Rmu_sc0006005.1_g000016
rosa_roxburghii Rroxscaffold_4G00276570
rosa_rugosa Rorug01G0449400 Rorug01G0449500
rosa_samantha Rh1AG474300 Rh1BG432300 Rh1CG445500 Rh1DG464900
rosa_wichuraiana Rw1G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AasI GACNNNNNNGTC 1 cut(s) 709
Acc36I ACCTGC 3 cut(s) 317, 1405, 2550
AccB1I GGYRCC 2 cut(s) 1630, 3630
AccBSI CCGCTC 1 cut(s) 1045
AccI GTMKAC 3 cut(s) 812, 837, 1914
AciI CCGC 9 cut(s) 563, 617, 1045, 1572, 1668, 1734, 1884, 2085, 2153
AclI AACGTT 1 cut(s) 2395
AclWI GGATC 6 cut(s) 613, 1825, 2085, 2284, 2646, 2971
AcoI YGGCCR 2 cut(s) 148, 2195
AcsI RAATTY 9 cut(s) 74, 111, 796, 998, 1066, 2091, 2147, 2927, 3355
AcuI CTGAAG 7 cut(s) 1344, 1779, 1833, 1962, 2969, 3195, 3255
AcvI CACGTG 2 cut(s) 650, 3637
AdeI CACNNNGTG 2 cut(s) 3515, 3637
AfaI GTAC 8 cut(s) 481, 523, 883, 1395, 2130, 2178, 2660, 3187
AfiI CCNNNNNNNGG 6 cut(s) 752, 950, 1301, 1940, 3440, 3577
AflIII ACRYGT 1 cut(s) 807
AgeI ACCGGT 1 cut(s) 752
AhdI GACNNNNNGTC 1 cut(s) 2578
AhlI ACTAGT 1 cut(s) 3164
AjiI CACGTC 1 cut(s) 545
AjnI CCWGG 8 cut(s) 1279, 1466, 1840, 1904, 2479, 2875, 3315, 3486
AjuI GAANNNNNNNTTGG 2 cut(s) 3495, 3527
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
Alw21I GWGCWC 1 cut(s) 1052
AlwI GGATC 6 cut(s) 613, 1825, 2085, 2284, 2646, 2971
AlwNI CAGNNNCTG 3 cut(s) 734, 2594, 2615
Ama87I CYCGRG 4 cut(s) 597, 949, 2552, 3401
AoxI GGCC 6 cut(s) 99, 148, 1490, 2195, 2794, 2825
ApoI RAATTY 9 cut(s) 74, 111, 796, 998, 1066, 2091, 2147, 2927, 3355
AsiGI ACCGGT 1 cut(s) 752
Asp700I GAANNNNTTC 2 cut(s) 1836, 3356
AspLEI GCGC 1 cut(s) 3666
AspS9I GGNCC 2 cut(s) 755, 2825
AsuC2I CCSGG 1 cut(s) 2663
AvaI CYCGRG 4 cut(s) 597, 949, 2552, 3401
AvaII GGWCC 1 cut(s) 755
AxyI CCTNAGG 1 cut(s) 1131
BalI TGGCCA 2 cut(s) 150, 2197
BanI GGYRCC 2 cut(s) 1630, 3630
BarI GAAGNNNNNNTAC 2 cut(s) 1303, 1335
BbrPI CACGTG 2 cut(s) 650, 3637
BbsI GAAGAC 2 cut(s) 648, 2009
Bbv12I GWGCWC 1 cut(s) 1052
BbvCI CCTCAGC 1 cut(s) 759
BciT130I CCWGG 8 cut(s) 1281, 1468, 1842, 1906, 2481, 2877, 3317, 3488
BclI TGATCA 1 cut(s) 2307
BcnI CCSGG 1 cut(s) 2663
BcuI ACTAGT 1 cut(s) 3164
BfaI CTAG 9 cut(s) 66, 210, 1079, 1506, 1587, 2463, 2813, 3158, 3165
BfmI CTRYAG 2 cut(s) 2702, 2820
BfoI RGCGCY 1 cut(s) 3667
BfuAI ACCTGC 3 cut(s) 317, 1405, 2550
BglI GCCNNNNNGGC 1 cut(s) 3628
BglII AGATCT 4 cut(s) 938, 1015, 2260, 3052
BlpI GCTNAGC 1 cut(s) 1203
BmcAI AGTACT 2 cut(s) 2130, 3187
Bme1390I CCNGG 9 cut(s) 1281, 1468, 1842, 1906, 2481, 2663, 2877, 3317, 3488
Bme18I GGWCC 1 cut(s) 755
BmeRI GACNNNNNGTC 1 cut(s) 2578
BmeT110I CYCGRG 4 cut(s) 597, 949, 2552, 3401
BmgBI CACGTC 1 cut(s) 545
BmgT120I GGNCC 2 cut(s) 755, 2825
BmiI GGNNCC 3 cut(s) 567, 1632, 3632
BmrFI CCNGG 9 cut(s) 1281, 1468, 1842, 1906, 2481, 2663, 2877, 3317, 3488
BmsI GCATC 7 cut(s) 89, 350, 1154, 1745, 2126, 2290, 2606
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 2 cut(s) 648, 2009
BpmI CTGGAG 4 cut(s) 1074, 1263, 1755, 2775
Bpu10I CCTNAGC 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 4 cut(s) 538, 611, 2285, 2663
BpuMI CCSGG 1 cut(s) 2663
BsaAI YACGTR 3 cut(s) 650, 2658, 3637
BsaI GGTCTC 2 cut(s) 128, 1466
BsaJI CCNNGG 9 cut(s) 774, 816, 1150, 1467, 1841, 1905, 2875, 3098, 3347
BsaWI WCCGGW 1 cut(s) 752
Bsc4I CCNNNNNNNGG 6 cut(s) 752, 950, 1301, 1940, 3440, 3577
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 4 cut(s) 138, 431, 1091, 1161
Bse21I CCTNAGG 1 cut(s) 1131
Bse3DI GCAATG 1 cut(s) 2310
BseBI CCWGG 8 cut(s) 1281, 1468, 1842, 1906, 2481, 2877, 3317, 3488
BseDI CCNNGG 9 cut(s) 774, 816, 1150, 1467, 1841, 1905, 2875, 3098, 3347
BseGI GGATG 8 cut(s) 1145, 1736, 1992, 2597, 2929, 2965, 3040, 3532
BseLI CCNNNNNNNGG 6 cut(s) 752, 950, 1301, 1940, 3440, 3577
BseMI GCAATG 1 cut(s) 2310
BseMII CTCAG 9 cut(s) 444, 773, 866, 1217, 1391, 2373, 3051, 3427, 3600
BseNI ACTGG 4 cut(s) 138, 431, 1091, 1161
BseRI GAGGAG 5 cut(s) 1596, 1640, 2772, 2903, 3233
BseYI CCCAGC 1 cut(s) 620
BsgI GTGCAG 6 cut(s) 393, 567, 720, 2528, 2586, 2607
BshFI GGCC 6 cut(s) 101, 150, 1492, 2197, 2796, 2827
BshNI GGYRCC 2 cut(s) 1630, 3630
BshTI ACCGGT 1 cut(s) 752
BsiHKAI GWGCWC 1 cut(s) 1052
BsiHKCI CYCGRG 4 cut(s) 597, 949, 2552, 3401
BsiSI CCGG 2 cut(s) 753, 2663
BslFI GGGAC 3 cut(s) 335, 2590, 2858
BslI CCNNNNNNNGG 6 cut(s) 752, 950, 1301, 1940, 3440, 3577
BsmBI CGTCTC 1 cut(s) 535
BsmFI GGGAC 3 cut(s) 335, 2590, 2858
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 6 cut(s) 101, 150, 1492, 2197, 2796, 2827
Bso31I GGTCTC 2 cut(s) 128, 1466
BsoBI CYCGRG 4 cut(s) 597, 949, 2552, 3401
Bsp1286I GDGCHC 1 cut(s) 1052
Bsp1720I GCTNAGC 1 cut(s) 1203
Bsp19I CCATGG 2 cut(s) 3098, 3347
BspACI CCGC 9 cut(s) 563, 617, 1045, 1572, 1668, 1734, 1884, 2085, 2153
BspANI GGCC 6 cut(s) 101, 150, 1492, 2197, 2796, 2827
BspCNI CTCAG 9 cut(s) 445, 772, 865, 1216, 1390, 2374, 3052, 3426, 3601
BspLI GGNNCC 3 cut(s) 567, 1632, 3632
BspMI ACCTGC 3 cut(s) 317, 1405, 2550
BspPI GGATC 6 cut(s) 613, 1825, 2085, 2284, 2646, 2971
BspT107I GGYRCC 2 cut(s) 1630, 3630
BspTNI GGTCTC 2 cut(s) 128, 1466
BsrBI CCGCTC 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 2310
BsrFI RCCGGY 1 cut(s) 752
BsrI ACTGG 4 cut(s) 138, 431, 1091, 1161
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 9 cut(s) 774, 816, 1150, 1467, 1841, 1905, 2875, 3098, 3347
BssNAI GTATAC 1 cut(s) 813
BssT1I CCWWGG 4 cut(s) 774, 816, 3098, 3347
Bst1107I GTATAC 1 cut(s) 813
Bst2UI CCWGG 8 cut(s) 1281, 1468, 1842, 1906, 2481, 2877, 3317, 3488
Bst4CI ACNGT 7 cut(s) 269, 371, 637, 1054, 2521, 2629, 2821
Bst6I CTCTTC 4 cut(s) 1014, 2661, 2945, 3210
BstAPI GCANNNNNTGC 3 cut(s) 244, 2594, 3619
BstBAI YACGTR 3 cut(s) 650, 2658, 3637
BstC8I GCNNGC 8 cut(s) 345, 392, 739, 1884, 2199, 2746, 3066, 3408
BstDSI CCRYGG 3 cut(s) 1150, 3098, 3347
BstF5I GGATG 8 cut(s) 1145, 1736, 1992, 2597, 2929, 2965, 3040, 3532
BstH2I RGCGCY 1 cut(s) 3667
BstHHI GCGC 1 cut(s) 3666
BstMWI GCNNNNNNNGC 9 cut(s) 244, 400, 779, 1664, 1681, 2594, 3416, 3619, 3628
BstNI CCWGG 8 cut(s) 1281, 1468, 1842, 1906, 2481, 2877, 3317, 3488
BstNSI RCATGY 3 cut(s) 394, 811, 3243
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 9 cut(s) 1279, 1466, 1840, 1904, 2479, 2661, 2875, 3315, 3486
BstSFI CTRYAG 2 cut(s) 2702, 2820
BstSNI TACGTA 1 cut(s) 2658
BstV2I GAAGAC 2 cut(s) 648, 2009
BstX2I RGATCY 8 cut(s) 938, 1015, 2077, 2260, 2289, 2638, 2963, 3052
BstXI CCANNNNNNTGG 2 cut(s) 916, 2524
BstYI RGATCY 8 cut(s) 938, 1015, 2077, 2260, 2289, 2638, 2963, 3052
BstZ17I GTATAC 1 cut(s) 813
Bsu36I CCTNAGG 1 cut(s) 1131
BsuRI GGCC 6 cut(s) 101, 150, 1492, 2197, 2796, 2827
BtgI CCRYGG 3 cut(s) 1150, 3098, 3347
BtrI CACGTC 1 cut(s) 545
BtsCI GGATG 8 cut(s) 1145, 1736, 1992, 2597, 2929, 2965, 3040, 3532
BtsI GCAGTG 2 cut(s) 2780, 3647
BtsIMutI CAGTG 8 cut(s) 145, 274, 450, 1986, 2517, 2780, 2817, 3647
BveI ACCTGC 3 cut(s) 317, 1405, 2550
Cac8I GCNNGC 8 cut(s) 345, 392, 739, 1884, 2199, 2746, 3066, 3408
CaiI CAGNNNCTG 3 cut(s) 734, 2594, 2615
CfoI GCGC 1 cut(s) 3666
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 2 cut(s) 755, 2825
CseI GACGC 2 cut(s) 233, 332
Csp6I GTAC 8 cut(s) 480, 522, 882, 1394, 2129, 2177, 2659, 3186
CspAI ACCGGT 1 cut(s) 752
CviQI GTAC 8 cut(s) 480, 522, 882, 1394, 2129, 2177, 2659, 3186
DraI TTTAAA 1 cut(s) 2932
DraIII CACNNNGTG 2 cut(s) 3515, 3637
DrdI GACNNNNNNGTC 1 cut(s) 709
DriI GACNNNNNGTC 1 cut(s) 2578
DseDI GACNNNNNNGTC 1 cut(s) 709
EaeI YGGCCR 2 cut(s) 148, 2195
Eam1104I CTCTTC 4 cut(s) 1014, 2661, 2945, 3210
Eam1105I GACNNNNNGTC 1 cut(s) 2578
EarI CTCTTC 4 cut(s) 1014, 2661, 2945, 3210
Eco105I TACGTA 1 cut(s) 2658
Eco130I CCWWGG 4 cut(s) 774, 816, 3098, 3347
Eco147I AGGCCT 1 cut(s) 101
Eco31I GGTCTC 2 cut(s) 128, 1466
Eco47I GGWCC 1 cut(s) 755
Eco57I CTGAAG 7 cut(s) 1344, 1779, 1833, 1962, 2969, 3195, 3255
Eco72I CACGTG 2 cut(s) 650, 3637
Eco81I CCTNAGG 1 cut(s) 1131
Eco88I CYCGRG 4 cut(s) 597, 949, 2552, 3401
EcoO109I RGGNCCY 1 cut(s) 2825
EcoRI GAATTC 1 cut(s) 2091
EcoRII CCWGG 8 cut(s) 1279, 1466, 1840, 1904, 2479, 2875, 3315, 3486
EcoT14I CCWWGG 4 cut(s) 774, 816, 3098, 3347
ErhI CCWWGG 4 cut(s) 774, 816, 3098, 3347
Esp3I CGTCTC 1 cut(s) 535
FalI AAGNNNNNCTT 6 cut(s) 327, 359, 1413, 1445, 2781, 2813
FaqI GGGAC 3 cut(s) 335, 2590, 2858
FauI CCCGC 2 cut(s) 1565, 1891
FbaI TGATCA 1 cut(s) 2307
FblI GTMKAC 3 cut(s) 812, 837, 1914
FokI GGATG 8 cut(s) 1132, 1723, 1999, 2584, 2936, 2972, 3027, 3539
FspBI CTAG 9 cut(s) 66, 210, 1079, 1506, 1587, 2463, 2813, 3158, 3165
GlaI GCGC 1 cut(s) 3665
GsaI CCCAGC 1 cut(s) 624
GsuI CTGGAG 4 cut(s) 1074, 1263, 1755, 2775
HaeII RGCGCY 1 cut(s) 3667
HaeIII GGCC 6 cut(s) 101, 150, 1492, 2197, 2796, 2827
HapII CCGG 2 cut(s) 753, 2663
HgaI GACGC 2 cut(s) 233, 332
HhaI GCGC 1 cut(s) 3666
Hin6I GCGC 1 cut(s) 3664
HinP1I GCGC 1 cut(s) 3664
HincII GTYRAC 5 cut(s) 223, 1138, 1950, 2719, 3013
HindII GTYRAC 5 cut(s) 223, 1138, 1950, 2719, 3013
HindIII AAGCTT 1 cut(s) 168
HpaII CCGG 2 cut(s) 753, 2663
Hpy99I CGWCG 1 cut(s) 371
HpyCH4III ACNGT 7 cut(s) 269, 371, 637, 1054, 2521, 2629, 2821
HpyCH4IV ACGT 8 cut(s) 544, 649, 1084, 1229, 2395, 2547, 2657, 3636
HpyF10VI GCNNNNNNNGC 9 cut(s) 244, 400, 779, 1664, 1681, 2594, 3416, 3619, 3628
HpySE526I ACGT 8 cut(s) 544, 649, 1084, 1229, 2395, 2547, 2657, 3636
HspAI GCGC 1 cut(s) 3664
Ksp22I TGATCA 1 cut(s) 2307
LmnI GCTCC 5 cut(s) 289, 571, 1047, 2043, 2944
LweI GCATC 7 cut(s) 89, 350, 1154, 1745, 2126, 2290, 2606
MaeI CTAG 9 cut(s) 66, 210, 1079, 1506, 1587, 2463, 2813, 3158, 3165
MaeII ACGT 8 cut(s) 544, 649, 1084, 1229, 2395, 2547, 2657, 3636
MaeIII GTNAC 5 cut(s) 422, 1591, 1616, 2882, 3598
MbiI CCGCTC 1 cut(s) 1045
MflI RGATCY 8 cut(s) 938, 1015, 2077, 2260, 2289, 2638, 2963, 3052
MhlI GDGCHC 1 cut(s) 1052
MlsI TGGCCA 2 cut(s) 150, 2197
MluNI TGGCCA 2 cut(s) 150, 2197
MmeI TCCRAC 3 cut(s) 770, 1764, 2378
Mox20I TGGCCA 2 cut(s) 150, 2197
MroXI GAANNNNTTC 2 cut(s) 1836, 3356
MscI TGGCCA 2 cut(s) 150, 2197
MslI CAYNNNNRTG 3 cut(s) 2214, 2522, 2562
Msp20I TGGCCA 2 cut(s) 150, 2197
MspA1I CMGCKG 2 cut(s) 230, 2570
MspI CCGG 2 cut(s) 753, 2663
MspR9I CCNGG 9 cut(s) 1281, 1468, 1842, 1906, 2481, 2663, 2877, 3317, 3488
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 8 cut(s) 1281, 1468, 1842, 1906, 2481, 2877, 3317, 3488
MwoI GCNNNNNNNGC 9 cut(s) 244, 400, 779, 1664, 1681, 2594, 3416, 3619, 3628
NciI CCSGG 1 cut(s) 2663
NcoI CCATGG 2 cut(s) 3098, 3347
NlaIV GGNNCC 3 cut(s) 567, 1632, 3632
NmuCI GTSAC 2 cut(s) 422, 2882
NspI RCATGY 3 cut(s) 394, 811, 3243
PaeI GCATGC 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 3401
PceI AGGCCT 1 cut(s) 101
PciI ACATGT 1 cut(s) 807
PctI GAATGC 1 cut(s) 446
PdmI GAANNNNTTC 2 cut(s) 1836, 3356
PfeI GAWTC 8 cut(s) 20, 275, 338, 1559, 1748, 1897, 2456, 3302
PfoI TCCNGGA 1 cut(s) 3315
PinAI ACCGGT 1 cut(s) 752
PmaCI CACGTG 2 cut(s) 650, 3637
PmlI CACGTG 2 cut(s) 650, 3637
Ppu21I YACGTR 3 cut(s) 650, 2658, 3637
PscI ACATGT 1 cut(s) 807
PshAI GACNNNNGTC 1 cut(s) 327
PsiI TTATAA 1 cut(s) 87
Psp1406I AACGTT 1 cut(s) 2395
Psp6I CCWGG 8 cut(s) 1279, 1466, 1840, 1904, 2479, 2875, 3315, 3486
PspCI CACGTG 2 cut(s) 650, 3637
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 8 cut(s) 1279, 1466, 1840, 1904, 2479, 2875, 3315, 3486
PspN4I GGNNCC 3 cut(s) 567, 1632, 3632
PspPI GGNCC 2 cut(s) 755, 2825
PsrI GAACNNNNNNTAC 2 cut(s) 2343, 2375
PstNI CAGNNNCTG 3 cut(s) 734, 2594, 2615
PsuI RGATCY 8 cut(s) 938, 1015, 2077, 2260, 2289, 2638, 2963, 3052
PvuII CAGCTG 2 cut(s) 230, 2570
RsaI GTAC 8 cut(s) 481, 523, 883, 1395, 2130, 2178, 2660, 3187
RsaNI GTAC 8 cut(s) 480, 522, 882, 1394, 2129, 2177, 2659, 3186
RseI CAYNNNNRTG 3 cut(s) 2214, 2522, 2562
Sau96I GGNCC 2 cut(s) 755, 2825
ScaI AGTACT 2 cut(s) 2130, 3187
ScrFI CCNGG 9 cut(s) 1281, 1468, 1842, 1906, 2481, 2663, 2877, 3317, 3488
SduI GDGCHC 1 cut(s) 1052
SfaNI GCATC 7 cut(s) 89, 350, 1154, 1745, 2126, 2290, 2606
SfcI CTRYAG 2 cut(s) 2702, 2820
Sfr274I CTCGAG 1 cut(s) 3401
SinI GGWCC 1 cut(s) 755
SlaI CTCGAG 1 cut(s) 3401
SmiMI CAYNNNNRTG 3 cut(s) 2214, 2522, 2562
SmlI CTYRAG 5 cut(s) 517, 590, 2264, 2642, 3401
SmoI CTYRAG 5 cut(s) 517, 590, 2264, 2642, 3401
SnaBI TACGTA 1 cut(s) 2658
SpeI ACTAGT 1 cut(s) 3164
SphI GCATGC 1 cut(s) 394
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 9 cut(s) 563, 617, 1045, 1572, 1668, 1734, 1884, 2085, 2153
SspI AATATT 1 cut(s) 2071
SspMI CTAG 9 cut(s) 66, 210, 1079, 1506, 1587, 2463, 2813, 3158, 3165
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 9 cut(s) 1279, 1466, 1840, 1904, 2479, 2661, 2875, 3315, 3486
StyI CCWWGG 4 cut(s) 774, 816, 3098, 3347
TaaI ACNGT 7 cut(s) 269, 371, 637, 1054, 2521, 2629, 2821
TaiI ACGT 8 cut(s) 547, 652, 1087, 1232, 2398, 2550, 2660, 3639
TaqI TCGA 6 cut(s) 1189, 1334, 1432, 2108, 2800, 3402
TatI WGTACW 3 cut(s) 521, 2128, 3185
TauI GCSGC 3 cut(s) 566, 619, 1670
TfiI GAWTC 8 cut(s) 20, 275, 338, 1559, 1748, 1897, 2456, 3302
TscAI CASTG 8 cut(s) 145, 274, 457, 1986, 2524, 2787, 2824, 3654
TseFI GTSAC 2 cut(s) 422, 2882
Tsp45I GTSAC 2 cut(s) 422, 2882
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 8 cut(s) 145, 274, 457, 1986, 2524, 2787, 2824, 3654
VpaK11BI GGWCC 1 cut(s) 755
XapI RAATTY 9 cut(s) 74, 111, 796, 998, 1066, 2091, 2147, 2927, 3355
XceI RCATGY 3 cut(s) 394, 811, 3243
XcmI CCANNNNNNNNNTGG 1 cut(s) 1148
XhoI CTCGAG 1 cut(s) 3401
XmiI GTMKAC 3 cut(s) 812, 837, 1914
XmnI GAANNNNTTC 2 cut(s) 1836, 3356
XspI CTAG 9 cut(s) 66, 210, 1079, 1506, 1587, 2463, 2813, 3158, 3165
ZrmI AGTACT 2 cut(s) 2130, 3187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.