Rh1DG464900
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000769
Physical Location & Seq
Reverse (-)
66671984 .. 66677724
5741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG464900.1

Sequence Viewer

Length: 4182 bp
ATGGGGTCAAAGGCTGTTGAAGTTTCTGATGAAACCTGTCATGTTAGCGGGGCGAATCATTATTCTGTCAATGTGAGTGATAATTTGTCTTCTTTCAAGAGCAAGGCATGTGACAGTTTACAGCATACCACCAGTGAGACAAGTAACCTACTTAGTGTCAATTCAAGTTATGATTCTTTGTCTGAAAATGCTGAAAGCAGAGCACCCCTAAGGTTTTCCAATACTTCTGATGATTTAGAAGGTGTTGAGAAACTTCCAAATACATACAATGATTCTAAAGTTGTTCAAGTTCATGAGGATAACATATCATGTGTAAGTAAAGCGAATGATACAAATACAGCATTCAGTAATCATAACAGGAATGTAGAGAGGAAGAACCTTGCTTGTAGTTTAGCTTCAGTCGGTAGTGTAGGCCCTGAAGAATTTGGAAAGCCACCCAATTCAGTCTTCTTGGAGATTCCTCATTTGAAAAATCCAAGTTCTGGCAGTGGCAGATCGAAGGAGAGAGTGCCAGAATTCTCTGGACTTATGGACTCATCATTAACAAAAGAAGCAATTACTAGCCAGAAATTTGCATCTTATAAAGGTTTGGAGGCCTCTACAAAAATTTGTCCAAAGTTTGAAGCAGAGACCAGTGATGATGGCCAAGACTCAAAACAGGAAGCTTTGAAATTTTCAGATCATGGTGAACAGGATATTAAGTCTAGTCAGGTGGTTGACGCAGCTGCTATGCAGCCTTTGCAATCCGTCACTGGTGATGACAGTGATGAATCTGATATTGTGGAGCATGATGTAAAGGTATGTGATATTTGTGGGGACGCAGGTCGTGAAGAATCGCTTGCCACTTGTAGTAGATGCAGCGACGGTGCAGAACACATCTATTGCATGCGAAAAATGCTTCGGAGAGTTCCTAAAGGTGACTGGTTGTGTGAGGAATGCAAGTTCACTGAGCAAACTGAAAACCAGAAGCAAGGTACAGATTTAGATGGAAACAGAATGAAGAAAGCCATCTTGAGTACACAGCTCTCTAATAAGAGACGTGCAGACAATACAGAAGCGGCTCCTTCTTCTAAAAGGCAGACTCTTGAGACTCGGGTGGGATCACCAAAGCCGCCCAGCCCTAAGAGAACAGTTGCATTATCACGTGAGTCTTCATTCAAGAGTATGGATAAGGATAAGTTGAAGTCCGCTTATCAGACTTCTCTGTCCACTAATGATGTATCAGAAGCTGCACGCTCTCCAACAACCGGTCCTCGGCTTCACACAGCCAAGGGTGCATTGTTAAAGTCAAATTCCTTCAACATGTATACCAAAGCAAAGGTTAAACTTGCAGACAACATTGTTCCTCAGAAGCAGAAGGGGTCAAAAGAGCATGGTACTCTTGATATGAAGGAGAGGACAACCAGAATGATGGGCAAATCTGTGTCATTCAGATCTCCTGACTCGGGGCGTTCCAATGTGTCCGAGTCAAAAGTTAAAATGCTTTCATCAAAATTTAACCCTCTTCAAGATCTAAAAGGAATGAAACAACTAAAAGAGCGGAGCACAGTTGAAAGAAAAAATTTGTCTAAACTAGAACGTCCTCCAGTTAGTTTGATAACATCAAGTGCTATTGTTTCAACACCTAAGGTTGACCAAGCATCCCGTGGTGATACCAGTTTGCTTTCATCTGTGAGCAACCTTCGAGAGCATAAGGCTCAGCTATTTGATGGAAAATTAAATACGTCATCAAAAGCAATAAGTAGTCTAACTCGTAAAGGTGTTGAAACTCAAAGTTCTCCAGGTGGTTCTTTACCTATTAGTGGAATGTGTAGTGCTGCTTCTGAAGAAAAGTCGAACCAAGTTATCTCTAACAATGAACCTTTATCCAGCTATTCTCAGCCTGTTGAGAAAGTACCTGCTGATGATGAAGGGAAATTAGAAGATACACTTCGATCATGGGAAATGACAAATCAGACTGATAAAACCAGGGAGACCTCTGTTCGCAGTAGGCCGATTGTTGCAGCTAGTTCAAAAAGTCTTTTCTGTTCAATTTGTAAGGAGATTGGTCATACTGCTGAATCTTGCAAAAGCGGGATTTCACAGGCTAGTGTTACTGATGTTTCTCCCCCAAGAAGTTACAGGGAGGAGGTGCCAAGAGATAGTAGGTTGAAAGATGCAATTCACGCCGCTTTGCTTAGAAAGCCTGAAATATACAAAAAGAAAACATTACCAGATCAATCTGATGAATTGTCCGCATCCAACATGGAATCAAGTTCTGAAGTAGCTTCTCCAGAGTTTGTATCAAATATGTTGAATAATAACACATATACTGAAGGATCACATGATGGAGAAGCAATTCCTGGGAGTTCAACTTCCGATTTCTACAAGAATACATTACAGCCCGCTAATTCTGTGATTCCTTCCAGGGTGGTAGACTCTGGTTCTGTTCTTCCTTCTTTTGGGAAGTCAACAATGAGAGATTTGCAGAGACAGGCTTCAGTGGGGATGTCTGTTCTTATGAAGACAACAGCCATTCCAGAATATGAATACATCTGGCAGGGGAGCTTTGAACTGCAAAGAGGTGGAAATATTCTGGATCTATGCGGTGGAATTCAAGCTCATTTATCGACTTGTGCATCACCAAAAGTACTTGAAGTGGTGAGCAAATTTCCGCACAAAGTTCCTCTGAAAGAAGTACCTCGTTTAAGTGTATGGCCAGCACAATTTCATCAAAGTGGTGTTAGAGAGGACAATATAGCACTTTACTTCTTTGCCAAAGATCTTGAGAGTTATGAAAGGAACTACAAGATCCTTATAGATGCACTGATCAAGAATGATTTAGCCCTCAAAGGAAAGTTTGGTGGGGTTGAACTTCTGATACTCCCTTCAAATCAGCTTCCTGAGAAATCACAACGTTGGAATATGCTTTATTTCTTATGGGGTGTGTTCAGGGAGACAAGGGTGCATTACATAGATTCTACTAGAAAATTAGATGTTCCTGCCTTGAATGATGTCTCATTGGACAATGACACTCCCACTGTGATGGCTTTATCCAAGAACCTGCACGTTCCCGAGCATATAGGTGCAGCTGACAGGTTGTCTGGTGCAGCCTCTGCATCCAAGTCCCCAGAGCCTGTGGTTCTTACGGTTAGCAAGGATCTTGAGAGCAAAGATACGTATCCGGAAGAGATGTGTTTTGGTTCAAAAGAGAACTTGGTGCTACAGGATAGTAGGGTTGACTCCGAATACACAACAAACAAGGCAGGCTTGTCTGGAGGAGTTAAACGCACCACTCCTTCACTGCAAGAAGTTTGCCTTCGAGAGAGCAGACTAGACACTGTAGGGCCTGTTGGTATGGAGAGAATTGCAGATAGAAAGAACATGGTTGGTGTCCCAGGAGGTGACGAGGAGGTGATTTTGGAAAAAGTGAAAATAGACAGGGTTGAATTTAAACAAGTGAAGGAGCTGAAGAGAGAGGATGGATCTAAAGAAATGGAAACAGCTTTTGTGAGAGACTTGACAACGAGAGTCAACTCTTGTCAGTCTAATAATAGAATACATCCCCATATAGATCTGTCAGAGCCAGCAGCTTCTTCCACCACAAATCAAGAAATGCCATGGAATGTTGTGAATACTATGCAAAGAGATGGACAGAGTGATAGTAAGAAGCCAAAACTAGATACTAGTGAACTACATGGTTTTAGTACTTCAAAGTCTGTTCTTTCTACTTCAGAAGAGGAGATGAATTGTCCTGAAGCATGTGATGAAAAAGTTATTCCAGAGGACTTGGGAACTACTGAAAGGCACTTCTTTCCTGTGGAATCAAGGAATGTCCAGGATTTTCAGATGGACAACAACTCTCTGCCATGGAAAAATTTCTCGTCAGGAAATGAGGATAAGTCTGACGGGTTTCCAAGTCTCGAGCTTGCTCTCAGGGCAGAAACAAAACCACCAAGTAAGGGAAATCTGCCTTTCTTTGTCGGGTTAGGTGATGAGAGAGATAACCAGGATAGGTTTTTAGAAAAAACACTTGGTGAGAAAGAGGATGATGTCTCTGCTTCACTTTCACTCTCTCTTTCTTTCCCCTTCCCAGACAAGGAACAACCTGTGAAACCTGTTACAAAATCTGAGCAACTTCTGCCTGAAAGGCACCACGTGAATACATCACTGCTTCTGTTTGGGCGCTTTCCAGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

1393

Amino Acids

153.44

Weight (kDa)

5.96

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 846 - 977 3.7e-49 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02890 AT3G02890 AT3G02890 AT3G02890 AT5G16680 AT5G16680
fragaria_vesca FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220
malus_domestica MD01G1238900.v1.1 MD07G1310800.v1.1
prunus_persica Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1
pyrus_communis pycom01g24640 pycom07g28310
rosa_chinensis RchiOBHm_Chr1g0384581
rosa_laevigata RLG00000026030
rosa_multiflora Rmu_sc0006005.1_g000016
rosa_roxburghii Rroxscaffold_4G00276570
rosa_rugosa Rorug01G0449400 Rorug01G0449500
rosa_samantha Rh1AG474300 Rh1BG432300 Rh1CG445500 Rh1DG464900
rosa_wichuraiana Rw1G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AasI GACNNNNNNGTC 1 cut(s) 1204
Acc36I ACCTGC 3 cut(s) 812, 1906, 3051
AccB1I GGYRCC 2 cut(s) 2131, 4131
AccB7I CCANNNNNTGG 1 cut(s) 482
AccBSI CCGCTC 1 cut(s) 1540
AccI GTMKAC 2 cut(s) 1307, 2415
AccIII TCCGGA 1 cut(s) 3163
AclI AACGTT 1 cut(s) 2896
AclWI GGATC 6 cut(s) 1108, 2326, 2586, 2785, 3147, 3472
AcoI YGGCCR 2 cut(s) 643, 2696
AcuI CTGAAG 9 cut(s) 381, 438, 1845, 2280, 2334, 2463, 3470, 3696, 3756
AcvI CACGTG 2 cut(s) 1145, 4138
AdeI CACNNNGTG 2 cut(s) 4016, 4138
AfaI GTAC 7 cut(s) 976, 1018, 1378, 1896, 2631, 2679, 3688
AfiI CCNNNNNNNGG 8 cut(s) 482, 1247, 1254, 1445, 1802, 2441, 3941, 4078
AflIII ACRYGT 1 cut(s) 1302
AgeI ACCGGT 1 cut(s) 1247
AhdI GACNNNNNGTC 1 cut(s) 3079
AhlI ACTAGT 1 cut(s) 3665
AjiI CACGTC 1 cut(s) 1040
AjnI CCWGG 7 cut(s) 1780, 1967, 2341, 2405, 3376, 3816, 3987
AjuI GAANNNNNNNTTGG 4 cut(s) 431, 463, 3996, 4028
AloI GAACNNNNNNTCC 2 cut(s) 926, 958
Alw21I GWGCWC 2 cut(s) 205, 1547
AlwI GGATC 6 cut(s) 1108, 2326, 2586, 2785, 3147, 3472
AlwNI CAGNNNCTG 3 cut(s) 1229, 3095, 3116
Ama87I CYCGRG 4 cut(s) 1092, 1444, 3053, 3902
Aor13HI TCCGGA 1 cut(s) 3163
AoxI GGCC 6 cut(s) 412, 594, 643, 1991, 2696, 3326
AsiGI ACCGGT 1 cut(s) 1247
Asp700I GAANNNNTTC 2 cut(s) 2337, 3857
AspLEI GCGC 1 cut(s) 4167
AspS9I GGNCC 3 cut(s) 413, 1250, 3326
AvaI CYCGRG 4 cut(s) 1092, 1444, 3053, 3902
AvaII GGWCC 1 cut(s) 1250
AxyI CCTNAGG 2 cut(s) 209, 1626
BalI TGGCCA 2 cut(s) 645, 2698
BanI GGYRCC 2 cut(s) 2131, 4131
BarI GAAGNNNNNNTAC 4 cut(s) 379, 411, 1804, 1836
BbrPI CACGTG 2 cut(s) 1145, 4138
BbsI GAAGAC 4 cut(s) 81, 439, 1143, 2510
Bbv12I GWGCWC 2 cut(s) 205, 1547
BciT130I CCWGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
BciVI GTATCC 1 cut(s) 3171
BclI TGATCA 1 cut(s) 2808
BcuI ACTAGT 1 cut(s) 3665
BfaI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2964, 3314, 3659, 3666
BfmI CTRYAG 2 cut(s) 3203, 3321
BfoI RGCGCY 1 cut(s) 4168
BfuAI ACCTGC 3 cut(s) 812, 1906, 3051
BfuI GTATCC 1 cut(s) 3171
BglI GCCNNNNNGGC 1 cut(s) 4129
BglII AGATCT 4 cut(s) 1433, 1510, 2761, 3553
BlpI GCTNAGC 1 cut(s) 1698
BmcAI AGTACT 2 cut(s) 2631, 3688
Bme1390I CCNGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
Bme18I GGWCC 1 cut(s) 1250
BmeRI GACNNNNNGTC 1 cut(s) 3079
BmeT110I CYCGRG 4 cut(s) 1092, 1444, 3053, 3902
BmgBI CACGTC 1 cut(s) 1040
BmgT120I GGNCC 3 cut(s) 413, 1250, 3326
BmiI GGNNCC 3 cut(s) 1062, 2133, 4133
BmrFI CCNGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
BmsI GCATC 8 cut(s) 584, 845, 1649, 2146, 2246, 2627, 2791, 3107
BoxI GACNNNNGTC 1 cut(s) 822
BpiI GAAGAC 4 cut(s) 81, 439, 1143, 2510
BpmI CTGGAG 4 cut(s) 1569, 1764, 2256, 3276
Bpu1102I GCTNAGC 1 cut(s) 1698
BpuEI CTTGAG 4 cut(s) 1033, 1106, 2786, 3164
BsaAI YACGTR 3 cut(s) 1145, 3159, 4138
BsaBI GATNNNNATC 1 cut(s) 3159
BsaI GGTCTC 2 cut(s) 623, 1967
BsaJI CCNNGG 9 cut(s) 1253, 1269, 1645, 1968, 2342, 2406, 3376, 3599, 3848
BsaWI WCCGGW 2 cut(s) 1247, 3163
Bsc4I CCNNNNNNNGG 8 cut(s) 482, 1247, 1254, 1445, 1802, 2441, 3941, 4078
Bse118I RCCGGY 1 cut(s) 1247
Bse1I ACTGG 6 cut(s) 132, 633, 757, 926, 1586, 1656
Bse21I CCTNAGG 2 cut(s) 209, 1626
Bse8I GATNNNNATC 1 cut(s) 3159
BseAI TCCGGA 1 cut(s) 3163
BseBI CCWGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
BseDI CCNNGG 9 cut(s) 1253, 1269, 1645, 1968, 2342, 2406, 3376, 3599, 3848
BseGI GGATG 7 cut(s) 1640, 2237, 2493, 3098, 3466, 3541, 4033
BseJI GATNNNNATC 1 cut(s) 3159
BseLI CCNNNNNNNGG 8 cut(s) 482, 1247, 1254, 1445, 1802, 2441, 3941, 4078
BseMII CTCAG 7 cut(s) 939, 1361, 1712, 1892, 2874, 3928, 4101
BseNI ACTGG 6 cut(s) 132, 633, 757, 926, 1586, 1656
BseRI GAGGAG 4 cut(s) 2141, 3273, 3404, 3734
BseYI CCCAGC 1 cut(s) 1115
BsgI GTGCAG 6 cut(s) 888, 1062, 1215, 3029, 3087, 3108
BshFI GGCC 6 cut(s) 414, 596, 645, 1993, 2698, 3328
BshNI GGYRCC 2 cut(s) 2131, 4131
BshTI ACCGGT 1 cut(s) 1247
BsiHKAI GWGCWC 2 cut(s) 205, 1547
BsiHKCI CYCGRG 4 cut(s) 1092, 1444, 3053, 3902
BsiSI CCGG 2 cut(s) 1248, 3164
BslFI GGGAC 3 cut(s) 830, 3091, 3359
BslI CCNNNNNNNGG 8 cut(s) 482, 1247, 1254, 1445, 1802, 2441, 3941, 4078
BsmBI CGTCTC 1 cut(s) 1030
BsmFI GGGAC 3 cut(s) 830, 3091, 3359
BsmI GAATGC 2 cut(s) 341, 941
BsnI GGCC 6 cut(s) 414, 596, 645, 1993, 2698, 3328
Bso31I GGTCTC 2 cut(s) 623, 1967
BsoBI CYCGRG 4 cut(s) 1092, 1444, 3053, 3902
Bsp1286I GDGCHC 2 cut(s) 205, 1547
Bsp13I TCCGGA 1 cut(s) 3163
Bsp1720I GCTNAGC 1 cut(s) 1698
Bsp19I CCATGG 2 cut(s) 3599, 3848
BspANI GGCC 6 cut(s) 414, 596, 645, 1993, 2698, 3328
BspCNI CTCAG 7 cut(s) 940, 1360, 1711, 1891, 2875, 3927, 4102
BspEI TCCGGA 1 cut(s) 3163
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 1062, 2133, 4133
BspMI ACCTGC 3 cut(s) 812, 1906, 3051
BspPI GGATC 6 cut(s) 1108, 2326, 2586, 2785, 3147, 3472
BspT107I GGYRCC 2 cut(s) 2131, 4131
BspTNI GGTCTC 2 cut(s) 623, 1967
BsrBI CCGCTC 1 cut(s) 1540
BsrFI RCCGGY 1 cut(s) 1247
BsrI ACTGG 6 cut(s) 132, 633, 757, 926, 1586, 1656
BssAI RCCGGY 1 cut(s) 1247
BssECI CCNNGG 9 cut(s) 1253, 1269, 1645, 1968, 2342, 2406, 3376, 3599, 3848
BssNAI GTATAC 1 cut(s) 1308
BssT1I CCWWGG 3 cut(s) 1269, 3599, 3848
Bst1107I GTATAC 1 cut(s) 1308
Bst2UI CCWGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
Bst4CI ACNGT 8 cut(s) 116, 764, 866, 1132, 1549, 3022, 3130, 3322
Bst6I CTCTTC 4 cut(s) 1509, 3162, 3446, 3711
BstAPI GCANNNNNTGC 3 cut(s) 739, 3095, 4120
BstBAI YACGTR 3 cut(s) 1145, 3159, 4138
BstC8I GCNNGC 8 cut(s) 840, 887, 1234, 2385, 2700, 3247, 3567, 3909
BstDSI CCRYGG 3 cut(s) 1645, 3599, 3848
BstF5I GGATG 7 cut(s) 1640, 2237, 2493, 3098, 3466, 3541, 4033
BstH2I RGCGCY 1 cut(s) 4168
BstHHI GCGC 1 cut(s) 4167
BstMWI GCNNNNNNNGC 9 cut(s) 739, 895, 1274, 2165, 2182, 3095, 3917, 4120, 4129
BstNI CCWGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
BstNSI RCATGY 4 cut(s) 111, 889, 1306, 3744
BstPAI GACNNNNGTC 1 cut(s) 822
BstSCI CCNGG 7 cut(s) 1780, 1967, 2341, 2405, 3376, 3816, 3987
BstSFI CTRYAG 2 cut(s) 3203, 3321
BstSNI TACGTA 1 cut(s) 3159
BstV2I GAAGAC 4 cut(s) 81, 439, 1143, 2510
BstX2I RGATCY 8 cut(s) 1433, 1510, 2578, 2761, 2790, 3139, 3464, 3553
BstXI CCANNNNNNTGG 2 cut(s) 1411, 3025
BstYI RGATCY 8 cut(s) 1433, 1510, 2578, 2761, 2790, 3139, 3464, 3553
BstZ17I GTATAC 1 cut(s) 1308
Bsu36I CCTNAGG 2 cut(s) 209, 1626
BsuI GTATCC 1 cut(s) 3171
BsuRI GGCC 6 cut(s) 414, 596, 645, 1993, 2698, 3328
BtgI CCRYGG 3 cut(s) 1645, 3599, 3848
BtrI CACGTC 1 cut(s) 1040
BtsCI GGATG 7 cut(s) 1640, 2237, 2493, 3098, 3466, 3541, 4033
BtsI GCAGTG 3 cut(s) 493, 3281, 4148
BveI ACCTGC 3 cut(s) 812, 1906, 3051
Cac8I GCNNGC 8 cut(s) 840, 887, 1234, 2385, 2700, 3247, 3567, 3909
CaiI CAGNNNCTG 3 cut(s) 1229, 3095, 3116
CciI TCATGA 1 cut(s) 292
CfoI GCGC 1 cut(s) 4167
Cfr10I RCCGGY 1 cut(s) 1247
Cfr13I GGNCC 3 cut(s) 413, 1250, 3326
CseI GACGC 2 cut(s) 728, 827
Csp6I GTAC 7 cut(s) 975, 1017, 1377, 1895, 2630, 2678, 3687
CspAI ACCGGT 1 cut(s) 1247
CviQI GTAC 7 cut(s) 975, 1017, 1377, 1895, 2630, 2678, 3687
DraI TTTAAA 1 cut(s) 3433
DraIII CACNNNGTG 2 cut(s) 4016, 4138
DrdI GACNNNNNNGTC 1 cut(s) 1204
DriI GACNNNNNGTC 1 cut(s) 3079
DseDI GACNNNNNNGTC 1 cut(s) 1204
EaeI YGGCCR 2 cut(s) 643, 2696
Eam1104I CTCTTC 4 cut(s) 1509, 3162, 3446, 3711
Eam1105I GACNNNNNGTC 1 cut(s) 3079
EarI CTCTTC 4 cut(s) 1509, 3162, 3446, 3711
Eco105I TACGTA 1 cut(s) 3159
Eco130I CCWWGG 3 cut(s) 1269, 3599, 3848
Eco147I AGGCCT 1 cut(s) 596
Eco31I GGTCTC 2 cut(s) 623, 1967
Eco47I GGWCC 1 cut(s) 1250
Eco57I CTGAAG 9 cut(s) 381, 438, 1845, 2280, 2334, 2463, 3470, 3696, 3756
Eco72I CACGTG 2 cut(s) 1145, 4138
Eco81I CCTNAGG 2 cut(s) 209, 1626
Eco88I CYCGRG 4 cut(s) 1092, 1444, 3053, 3902
EcoO109I RGGNCCY 2 cut(s) 413, 3326
EcoRI GAATTC 2 cut(s) 515, 2592
EcoRII CCWGG 7 cut(s) 1780, 1967, 2341, 2405, 3376, 3816, 3987
EcoT14I CCWWGG 3 cut(s) 1269, 3599, 3848
ErhI CCWWGG 3 cut(s) 1269, 3599, 3848
Esp3I CGTCTC 1 cut(s) 1030
FalI AAGNNNNNCTT 8 cut(s) 822, 854, 1914, 1946, 3233, 3265, 3282, 3314
FaqI GGGAC 3 cut(s) 830, 3091, 3359
FauI CCCGC 3 cut(s) 41, 2066, 2392
FbaI TGATCA 1 cut(s) 2808
FblI GTMKAC 2 cut(s) 1307, 2415
FokI GGATG 7 cut(s) 1627, 2224, 2500, 3085, 3473, 3528, 4040
FspBI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2964, 3314, 3659, 3666
GlaI GCGC 1 cut(s) 4166
GsaI CCCAGC 1 cut(s) 1119
GsuI CTGGAG 4 cut(s) 1569, 1764, 2256, 3276
HaeII RGCGCY 1 cut(s) 4168
HaeIII GGCC 6 cut(s) 414, 596, 645, 1993, 2698, 3328
HapII CCGG 2 cut(s) 1248, 3164
HgaI GACGC 2 cut(s) 728, 827
HhaI GCGC 1 cut(s) 4167
Hin6I GCGC 1 cut(s) 4165
HinP1I GCGC 1 cut(s) 4165
HincII GTYRAC 5 cut(s) 718, 1633, 2451, 3220, 3514
HindII GTYRAC 5 cut(s) 718, 1633, 2451, 3220, 3514
HindIII AAGCTT 1 cut(s) 663
HpaII CCGG 2 cut(s) 1248, 3164
Hpy99I CGWCG 1 cut(s) 866
HpyCH4III ACNGT 8 cut(s) 116, 764, 866, 1132, 1549, 3022, 3130, 3322
HpyCH4IV ACGT 8 cut(s) 1039, 1144, 1579, 1724, 2896, 3048, 3158, 4137
HpyF10VI GCNNNNNNNGC 9 cut(s) 739, 895, 1274, 2165, 2182, 3095, 3917, 4120, 4129
HpySE526I ACGT 8 cut(s) 1039, 1144, 1579, 1724, 2896, 3048, 3158, 4137
HspAI GCGC 1 cut(s) 4165
Kpn2I TCCGGA 1 cut(s) 3163
Ksp22I TGATCA 1 cut(s) 2808
LmnI GCTCC 5 cut(s) 784, 1066, 1542, 2544, 3445
LweI GCATC 8 cut(s) 584, 845, 1649, 2146, 2246, 2627, 2791, 3107
MaeI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2964, 3314, 3659, 3666
MaeII ACGT 8 cut(s) 1039, 1144, 1579, 1724, 2896, 3048, 3158, 4137
MaeIII GTNAC 8 cut(s) 110, 143, 748, 917, 2092, 2117, 3383, 4099
MbiI CCGCTC 1 cut(s) 1540
MflI RGATCY 8 cut(s) 1433, 1510, 2578, 2761, 2790, 3139, 3464, 3553
MhlI GDGCHC 2 cut(s) 205, 1547
MlsI TGGCCA 2 cut(s) 645, 2698
MluNI TGGCCA 2 cut(s) 645, 2698
MmeI TCCRAC 3 cut(s) 1265, 2265, 2879
Mox20I TGGCCA 2 cut(s) 645, 2698
MroI TCCGGA 1 cut(s) 3163
MroXI GAANNNNTTC 2 cut(s) 2337, 3857
MscI TGGCCA 2 cut(s) 645, 2698
MslI CAYNNNNRTG 3 cut(s) 2715, 3023, 3063
Msp20I TGGCCA 2 cut(s) 645, 2698
MspA1I CMGCKG 2 cut(s) 725, 3071
MspI CCGG 2 cut(s) 1248, 3164
MspR9I CCNGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
Mva1269I GAATGC 2 cut(s) 341, 941
MvaI CCWGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
MwoI GCNNNNNNNGC 9 cut(s) 739, 895, 1274, 2165, 2182, 3095, 3917, 4120, 4129
NcoI CCATGG 2 cut(s) 3599, 3848
NlaIV GGNNCC 3 cut(s) 1062, 2133, 4133
NmeAIII GCCGAG 1 cut(s) 1234
NmuCI GTSAC 4 cut(s) 110, 748, 917, 3383
NspI RCATGY 4 cut(s) 111, 889, 1306, 3744
PaeI GCATGC 1 cut(s) 889
PaeR7I CTCGAG 1 cut(s) 3902
PagI TCATGA 1 cut(s) 292
PceI AGGCCT 1 cut(s) 596
PciI ACATGT 1 cut(s) 1302
PctI GAATGC 2 cut(s) 341, 941
PdmI GAANNNNTTC 2 cut(s) 2337, 3857
PflMI CCANNNNNTGG 1 cut(s) 482
PfoI TCCNGGA 1 cut(s) 3816
PinAI ACCGGT 1 cut(s) 1247
PmaCI CACGTG 2 cut(s) 1145, 4138
PmlI CACGTG 2 cut(s) 1145, 4138
Ppu21I YACGTR 3 cut(s) 1145, 3159, 4138
PscI ACATGT 1 cut(s) 1302
PshAI GACNNNNGTC 1 cut(s) 822
PsiI TTATAA 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 2896
Psp6I CCWGG 7 cut(s) 1780, 1967, 2341, 2405, 3376, 3816, 3987
PspCI CACGTG 2 cut(s) 1145, 4138
PspFI CCCAGC 1 cut(s) 1115
PspGI CCWGG 7 cut(s) 1780, 1967, 2341, 2405, 3376, 3816, 3987
PspN4I GGNNCC 3 cut(s) 1062, 2133, 4133
PspPI GGNCC 3 cut(s) 413, 1250, 3326
PsrI GAACNNNNNNTAC 2 cut(s) 2844, 2876
PstNI CAGNNNCTG 3 cut(s) 1229, 3095, 3116
PsuI RGATCY 8 cut(s) 1433, 1510, 2578, 2761, 2790, 3139, 3464, 3553
PvuII CAGCTG 2 cut(s) 725, 3071
RsaI GTAC 7 cut(s) 976, 1018, 1378, 1896, 2631, 2679, 3688
RsaNI GTAC 7 cut(s) 975, 1017, 1377, 1895, 2630, 2678, 3687
RseI CAYNNNNRTG 3 cut(s) 2715, 3023, 3063
Sau96I GGNCC 3 cut(s) 413, 1250, 3326
ScaI AGTACT 2 cut(s) 2631, 3688
ScrFI CCNGG 7 cut(s) 1782, 1969, 2343, 2407, 3378, 3818, 3989
SduI GDGCHC 2 cut(s) 205, 1547
SfaNI GCATC 8 cut(s) 584, 845, 1649, 2146, 2246, 2627, 2791, 3107
SfcI CTRYAG 2 cut(s) 3203, 3321
Sfr274I CTCGAG 1 cut(s) 3902
SinI GGWCC 1 cut(s) 1250
SlaI CTCGAG 1 cut(s) 3902
SmiMI CAYNNNNRTG 3 cut(s) 2715, 3023, 3063
SmlI CTYRAG 5 cut(s) 1012, 1085, 2765, 3143, 3902
SmoI CTYRAG 5 cut(s) 1012, 1085, 2765, 3143, 3902
SnaBI TACGTA 1 cut(s) 3159
SpeI ACTAGT 1 cut(s) 3665
SphI GCATGC 1 cut(s) 889
SseBI AGGCCT 1 cut(s) 596
SspI AATATT 1 cut(s) 2572
SspMI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2964, 3314, 3659, 3666
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 7 cut(s) 1780, 1967, 2341, 2405, 3376, 3816, 3987
StyI CCWWGG 3 cut(s) 1269, 3599, 3848
TaaI ACNGT 8 cut(s) 116, 764, 866, 1132, 1549, 3022, 3130, 3322
TaiI ACGT 8 cut(s) 1042, 1147, 1582, 1727, 2899, 3051, 3161, 4140
TaqI TCGA 7 cut(s) 497, 1684, 1835, 1933, 2609, 3301, 3903
TatI WGTACW 3 cut(s) 1016, 2629, 3686
TauI GCSGC 3 cut(s) 1061, 1114, 2171
TseFI GTSAC 4 cut(s) 110, 748, 917, 3383
Tsp45I GTSAC 4 cut(s) 110, 748, 917, 3383
TspGWI ACGGA 1 cut(s) 736
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 1250
XceI RCATGY 4 cut(s) 111, 889, 1306, 3744
XcmI CCANNNNNNNNNTGG 1 cut(s) 1643
XhoI CTCGAG 1 cut(s) 3902
XmiI GTMKAC 2 cut(s) 1307, 2415
XmnI GAANNNNTTC 2 cut(s) 2337, 3857
XspI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2964, 3314, 3659, 3666
ZrmI AGTACT 2 cut(s) 2631, 3688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.