MD01G1238900.v1.1
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000769
Physical Location & Seq
Reverse (-)
32526920 .. 32536461
9542 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1238900.v1.1.491

Sequence Viewer

Length: 4359 bp
ATGGTGTCATCTAAATTTTTAAAAGAGTTTGGTAAGCATTCCAGAGGTGGGAAGGTTCATATTAGTGGCGAGTCTGGGGCTTGCAACGTGTGCTCTGCTCCCTGTTCATCTTGTATGCATCCTAATAGATCTTTTATGGGGTCAAAGGCTGATGAATTTTCTGATGAAACCTGTCGTGTTAATGCGGCTAGTCAATATTCTATCAGTGTGGGAGATACTTCATCTTCTTTTAAGAGAAAAGCATGTGACAGTTTACAACATACCACCAGCGAGACAAGTAACCTGCTTAGCGTTAATTCAAGTCACGATTCTTTGTCTGAAAATGCTGAAAGCAAAGCAACCATGAGGTCTTCTGATACATCCGAAAATGCTGTTGAAGTCCATGATGATAACATTTCATGTATAAGCAGAGCCAATGATGCAAATCTGGCAGTCAATAACCATAACAGGAATGTAGAATGGAAGAATTTGTCTTGTAGTTTAGCTTCAGCTGGTAGTATAGGGACAGAAGAATCTGGAAAGGCACATAAGTCAACCTTGTCAGAGATGGTAAAACCTGCAGATTCTGGTGATGGCACAAAAAAGGGAAAACTGCCAGAATTTTTTGGACATGCTGATTCATCATTTAAGAATGAGTCAGATATTTTTGCTGGCCAGAAATTCGTTTCTTGTAAAAGTTTAGGGGTCCCTACAAAATTGTGTCCAAAGATAGAAGTAGAGAGTAATGGACAAGACCCAAAAGATGAAGCGTCAAAATGTTTGGATCATGGTGAGAAAGATGTTATGTCGAATGAGTTGGTCGAAGTAGCTGACATGCAGCCCTTGCAATCTGCATCTGGGGATGACAGTGATGAATCAGACATTGTGGAGCATGATGTAAAAGTATGTGATATTTGTGGGGATGCAGGTCGAGAGGATATGCTTGCCATGTGTAGTAGGTGCATCGATGGTGCAGAACACATCTATTGTATGCGAAAAATGCTTCGGAGAGTTCCTAAAGGTCCATGGCTGTGTGAGGAATGCAAGTTTACCGAGGAAACTGACAACCAGAAGCAAGATATCGAGGTGAAAAGAATGGAGAAAGCGATTATGAGTACACAATTCTCTAATAAGAGACTTGCAGAAAACATAGAAGTGGCTCCTTCTGCGAAAAGGCAGGGTCTTGAAATGCGGGTGGGATCACCAAAGCCATCTAGCCCTAAGAGAATGGGTGCTCTATCACGCGAGTCTTCATTCAAAAGCATAGATAAGGATAGGTTGAGGCCAGCTTATCAGACTTCTCAGGGTACTAATAATATATCAGAAACTGCACGTTCTCCTTCAAATGGCATAGGGGCCAAGGGTACATTTTCAAAGTCAAATTCGTTCAACACGTTAAATTCTAAACCAAAAGTTAAACATGTAGATGAAGTTGTTCCTCAAAAGCAAAAGGGTTTTAAAGAACATGCTTCCCTTGATATGAAGGAGAGGGTGGTGCCCAGAATTATGGGCAAGTCTGTGTCTTTCAAATCTGCTAGCTCAGGGCGTTCGAATGTTTCTGAATCAAAAGTTAAAATGCTCTCATCAAAGTTTAGCCATGTTCCAGATCTTAAAGCATTGAAACAGGCAAAAGAGCGGAGTGTCGTTGAAAGAAAAATTTTGTCCAAACTAGACCGTCCCATGGCTAATTTTACAACAGCTAATTCTACTGTCTCAATTCCTAAGAGTGACCTAGCATCTCGTGGTGAAACTAGTTTGCTTTCATCTGTGAGCAATAGAGAGCCAAAGGTTGCACTACCTGATGGAAAATTAAGTACATCAAAATCTAGTGTAACTCGTAAAGGTTTTGACACTCAAATTACTTCAGGTGGAGGTTCATCTATGAATGGAATGTCTAGTTCTGCTTCTGAACAAAAGTTATACCATGTTAGCTTTAAGGATGAATCCTTATCCAGCTCGGTGACTGTTGAGAAATCACACTGTAATGTAGATGGAACATCAGAAGATGTGTTACCACAATCAGGGGAAATGATAGATCAGGATGATAAAGCCAGGGAGAGCTCTGTTCGCTGTGCGCCTGCTGTTGTAGCTAGTCCAAAATGTAAAGAGTTAGGAATTAACGCGGAATTTGGTAGACCTGTAATTTCACAAGCTTCTGGTACTGGTGCTTCTGCTCCGAGAGGTTCTAGGGAGGAGATGCAGAGAGGTAATAGGTTGAAAGATGCTATTCATGCAGCTTTGGTTAGAAAGTCTGAAATATACAGAAAGAAAAGAGTATTCGATCAGTCTGACGAGTCTTCAACGCCGAACATGGACTCAAGTTATGAAGTAGCTGCTCAAGAGCAATCACCTGACGGACATGCAATCCTTGGGACTTCTACTTCTGACTCTTACAAGAATGCAACTGTCAATAATTTAAAGCAGCTTACAGTGCAGCCCATTGATTCTGGGTTCCCTTCCAAAGTGGCATACTCTGTTTCTGTTGTTCCTGGCAAGCCTACAGTGAAGGATTTGCATAATCATGCTTCAGGGGCGATGTCTGTTCTTGTGAAGACAACAGCCATTCCAGAATATGAATACATTTGGCAGGGGAGTTTTGAAGTGCAGAGAGGTGGAAATTTTATGGATTTATGTGGTGGAGTTCAAGCTCACTTGTCGACTTGTGCATCACCAAAGGTCCCTGAAGTGGTAAACAAATTTCCGCACAAAGTTTCTCTGAATGAAGTTCCTCGCCTGAGTGTATGGCCATCACAGTTCCATCAAAGTGGCGCTAAAGAAGATAATATTGCACTTTATTTCTTTGCCAAAGATCTTGATAGTTACGAAAGACACTACAACAGCCTGTTGGATGCTATGGTCAAGAATGATCTAGCCCTCAAAGGGAATTTTGATGGTGTTGAACTTCTGATATTCCCATCCAATCAGCTTCCTGAGAAATCACAACGTTGGAATATGCTATTTTTCCTTTGGGGTGTGTTCAGGACAATGAGGGTGCATTGTTTAGATTTTACCAAGACATGTGTTCCTAGCTTGAGCAACTCATTTCAGAAAGCTCCTACTGATGGCATGACATTGTCCGAGAACATATGTATACCTAAGCATATAGATGAATCTTCTCCTTCTGACAGATCTTGTGATGTTCCTTCTGCTTCCAATGCCTCTCTGCATATGGGCCCCACAGTTAGCAAGGATTGTGAGAACAAAGATACTTACCCTGAAGAAGTGCGTTTAGGTTCAAAAGTGAACTCGGCAGTACAGGATTGTAGGGTTGATTCCAACACAACAAACAATGCTGGCTTGTCTGAAGGAGTTGAATACGGTACTCCTTGCCTGCAGGAAAGTTGTCTTCGAGAGAGCAGAGTTGGTAAAGAAATTAAGTCTTCTATTCCAACAACTGGGTCAAATAGCTCTAACAAAGGTGAGAAGAGGCAAGTGCATTGGGTCACTTCTGTTGATAGGGAAGATACTGATTCTCTGGAGATTCGTCCTGTTTCCAGTCGAGAGTTAGCCGTTTCTAGGAGTGTTGGGGATGAGAGATTTCCAGATGGAAAGAAAAGGGTTGGTATCGCAGGAGGGGTTGAGGAGGTGATTCTGGATGGAGTGAGGATGGATAAAGCTGATTTTAAACAAGAGAGGGAATTGAGGAGAGATTATGGATATAAGGAATCAGAAGCAGCCTTGGTGAGAGACTTGACAGCCAGAGTCAACTCTTGTCAGCCCAGTGATAGAAAACACCCAGACATACCTATTTCAGAGAGAACAACTTCTGCAGCCACAACTCAAGAAATGCCATGGAATGAGGTGAATATCACACGGATGGATGTCGAGATTGATAGGAAGAAGCCAAAAATCGGTTCAAGTGGATTTGATGGCTGTAACACTCCTAGAGGTACAGACGCTGTGGTTGAGGACAAGAGATGCTTTGAAGCCTGTGAGGAGAAAGTTATTCCAGAGGACTTGGGAAATACTGAAAGGTACTTCTTTCCTTTGGATTCACGGCATTTTCAGCATTTTGGGCCAGTTGGCAACTCGGTGCCATGGAAAGATTTCTCATCAGGGTATGTGGATAAGACTCGCGAAGGGTTCCCAAGTCTCGAGCTGGCTCTAGGGGGAGAAACAAAACCACAAAATAAGGGAATGCTGCCCTTCTTTGTCGGGTTAGCAGACGAGAAAGGTAACAACCAAGATAAGCCTTTAGAAGCAGCGGTGGTGGATGAGAAAGATGATGATGTGTCTGCGTCACTTTCCCTTTCCCTTTCATTCCCATTCCCAGACAAGGAACAACCTGGGAAACCTGTTTCAAAACCGGAGCAGCTTGTGCCTGAAAGACACCATGTGAATACATCACTGCTGCTCTTTGGGCGCTTGCCAGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

1453

Amino Acids

158.91

Weight (kDa)

6.29

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 855 - 986 1.2e-51 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02890 AT3G02890 AT3G02890 AT3G02890 AT5G16680 AT5G16680
fragaria_vesca FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220
malus_domestica MD01G1238900.v1.1 MD07G1310800.v1.1
prunus_persica Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1
pyrus_communis pycom01g24640 pycom07g28310
rosa_chinensis RchiOBHm_Chr1g0384581
rosa_laevigata RLG00000026030
rosa_multiflora Rmu_sc0006005.1_g000016
rosa_roxburghii Rroxscaffold_4G00276570
rosa_rugosa Rorug01G0449400 Rorug01G0449500
rosa_samantha Rh1AG474300 Rh1BG432300 Rh1CG445500 Rh1DG464900
rosa_wichuraiana Rw1G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 291, 565, 896
AccB1I GGYRCC 2 cut(s) 1474, 4012
AccB7I CCANNNNNTGG 1 cut(s) 3374
AccBSI CCGCTC 1 cut(s) 1615
AccI GTMKAC 3 cut(s) 2113, 2636, 3070
AccII CGCG 3 cut(s) 1224, 2102, 4056
AciI CCGC 6 cut(s) 185, 1171, 1615, 2102, 2681, 4184
AclI AACGTT 1 cut(s) 2923
AclWI GGATC 2 cut(s) 771, 1186
AcoI YGGCCR 2 cut(s) 652, 2723
AcuI CTGAAG 6 cut(s) 471, 1827, 2490, 2682, 3216, 3303
AdeI CACNNNGTG 1 cut(s) 4315
AfaI GTAC 9 cut(s) 1096, 1288, 1345, 1795, 2140, 3234, 3301, 3871, 3956
AflIII ACRYGT 4 cut(s) 87, 1371, 1399, 2996
AhlI ACTAGT 1 cut(s) 1730
AjnI CCWGG 3 cut(s) 2030, 2467, 4264
AjuI GAANNNNNNNTTGG 2 cut(s) 3817, 3849
Alw21I GWGCWC 3 cut(s) 95, 1216, 2042
Alw26I GTCTC 5 cut(s) 266, 1108, 1696, 3660, 4076
AlwI GGATC 2 cut(s) 771, 1186
AlwNI CAGNNNCTG 3 cut(s) 566, 1307, 3878
Ama87I CYCGRG 1 cut(s) 4073
AoxI GGCC 6 cut(s) 652, 1262, 1335, 2723, 3151, 3995
ApaI GGGCCC 1 cut(s) 3155
Asp700I GAANNNNTTC 3 cut(s) 1413, 3742, 4025
AspLEI GCGC 3 cut(s) 2056, 2750, 4344
AspS9I GGNCC 7 cut(s) 685, 1001, 1335, 2656, 3151, 3152, 3995
AsuII TTCGAA 1 cut(s) 1529
AsuNHI GCTAGC 1 cut(s) 1514
AvaI CYCGRG 1 cut(s) 4073
AvaII GGWCC 3 cut(s) 685, 1001, 2656
BaeGI GKGCMC 2 cut(s) 1479, 3155
BalI TGGCCA 2 cut(s) 654, 2725
BanI GGYRCC 2 cut(s) 1474, 4012
BanII GRGCYC 2 cut(s) 2042, 3155
BarI GAAGNNNNNNTAC 6 cut(s) 469, 501, 1974, 2006, 2131, 2163
BauI CACGAG 1 cut(s) 1719
BbsI GAAGAC 6 cut(s) 342, 1221, 2268, 2537, 3317, 3351
Bbv12I GWGCWC 3 cut(s) 95, 1216, 2042
BceAI ACGGC 2 cut(s) 3473, 3992
BciT130I CCWGG 3 cut(s) 2032, 2469, 4266
BcoDI GTCTC 5 cut(s) 266, 1108, 1696, 3660, 4076
BcuI ACTAGT 1 cut(s) 1730
BfmI CTRYAG 4 cut(s) 558, 2478, 3311, 3747
BfoI RGCGCY 2 cut(s) 2751, 4345
BfuAI ACCTGC 3 cut(s) 291, 565, 896
BglII AGATCT 4 cut(s) 128, 1585, 2788, 3107
BlpI GCTNAGC 1 cut(s) 287
Bme1390I CCNGG 3 cut(s) 2032, 2469, 4266
Bme18I GGWCC 3 cut(s) 685, 1001, 2656
BmeT110I CYCGRG 1 cut(s) 4073
BmgT120I GGNCC 7 cut(s) 685, 1001, 1335, 2656, 3151, 3152, 3995
BmrFI CCNGG 3 cut(s) 2032, 2469, 4266
BmrI ACTGGG 2 cut(s) 3384, 3693
BmtI GCTAGC 1 cut(s) 1518
BmuI ACTGGG 2 cut(s) 3384, 3693
BpiI GAAGAC 6 cut(s) 342, 1221, 2268, 2537, 3317, 3351
BpmI CTGGAG 1 cut(s) 3476
Bpu10I CCTNAGC 2 cut(s) 1519, 3075
Bpu1102I GCTNAGC 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 1529
BpuEI CTTGAG 4 cut(s) 2281, 2301, 3031, 3744
Bsa29I ATCGAT 1 cut(s) 945
BsaBI GATNNNNATC 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 4285
Bse1I ACTGG 5 cut(s) 2146, 3379, 3474, 3699, 3998
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 3 cut(s) 2032, 2469, 4266
BseCI ATCGAT 1 cut(s) 945
BseJI GATNNNNATC 1 cut(s) 423
BseMII CTCAG 4 cut(s) 1295, 1533, 2705, 2901
BseNI ACTGG 5 cut(s) 2146, 3379, 3474, 3699, 3998
BseRI GAGGAG 4 cut(s) 2186, 3575, 3637, 3929
BseSI GKGCMC 2 cut(s) 1479, 3155
BsgI GTGCAG 4 cut(s) 972, 1293, 2432, 2603
Bsh1236I CGCG 3 cut(s) 1224, 2102, 4056
BshFI GGCC 6 cut(s) 654, 1264, 1337, 2725, 3153, 3997
BshNI GGYRCC 2 cut(s) 1474, 4012
BshVI ATCGAT 1 cut(s) 945
BsiHKAI GWGCWC 3 cut(s) 95, 1216, 2042
BsiHKCI CYCGRG 1 cut(s) 4073
BsiSI CCGG 1 cut(s) 4286
BslFI GGGAC 5 cut(s) 517, 671, 1641, 2365, 2642
BsmAI GTCTC 5 cut(s) 266, 1108, 1696, 3660, 4076
BsmFI GGGAC 5 cut(s) 517, 671, 1641, 2365, 2642
BsmI GAATGC 4 cut(s) 37, 1025, 2383, 4122
BsnI GGCC 6 cut(s) 654, 1264, 1337, 2725, 3153, 3997
BsoBI CYCGRG 1 cut(s) 4073
Bsp119I TTCGAA 1 cut(s) 1529
Bsp120I GGGCCC 1 cut(s) 3151
Bsp1286I GDGCHC 5 cut(s) 95, 1216, 1479, 2042, 3155
Bsp143I GATC 9 cut(s) 128, 763, 1178, 1585, 2014, 2260, 2788, 2845, 3107
Bsp1720I GCTNAGC 1 cut(s) 287
Bsp19I CCATGG 4 cut(s) 1004, 1659, 3770, 4016
Bsp68I TCGCGA 1 cut(s) 4056
BspACI CCGC 6 cut(s) 185, 1171, 1615, 2102, 2681, 4184
BspANI GGCC 6 cut(s) 654, 1264, 1337, 2725, 3153, 3997
BspCNI CTCAG 4 cut(s) 1294, 1532, 2706, 2902
BspDI ATCGAT 1 cut(s) 945
BspFNI CGCG 3 cut(s) 1224, 2102, 4056
BspMAI CTGCAG 3 cut(s) 562, 3315, 3751
BspMI ACCTGC 3 cut(s) 291, 565, 896
BspOI GCTAGC 1 cut(s) 1518
BspPI GGATC 2 cut(s) 771, 1186
BspT104I TTCGAA 1 cut(s) 1529
BspT107I GGYRCC 2 cut(s) 1474, 4012
BsrBI CCGCTC 1 cut(s) 1615
BsrI ACTGG 5 cut(s) 2146, 3379, 3474, 3699, 3998
BssMI GATC 9 cut(s) 128, 763, 1178, 1585, 2014, 2260, 2788, 2845, 3107
BssNAI GTATAC 1 cut(s) 3071
BssSI CACGAG 1 cut(s) 1719
BssT1I CCWWGG 7 cut(s) 1004, 1338, 1659, 2347, 3657, 3770, 4016
Bst1107I GTATAC 1 cut(s) 3071
Bst2BI CACGAG 1 cut(s) 1719
Bst2UI CCWGG 3 cut(s) 2032, 2469, 4266
Bst6I CTCTTC 1 cut(s) 3398
BstAPI GCANNNNNTGC 3 cut(s) 90, 823, 4297
BstBI TTCGAA 1 cut(s) 1529
BstDEI CTNAG 8 cut(s) 287, 1200, 1281, 1519, 1701, 2714, 2910, 3075
BstDSI CCRYGG 4 cut(s) 1004, 1659, 3770, 4016
BstFNI CGCG 3 cut(s) 1224, 2102, 4056
BstH2I RGCGCY 2 cut(s) 2751, 4345
BstHHI GCGC 3 cut(s) 2056, 2750, 4344
BstKTI GATC 9 cut(s) 131, 766, 1181, 1588, 2017, 2263, 2791, 2848, 3110
BstMAI GTCTC 5 cut(s) 266, 1108, 1696, 3660, 4076
BstMBI GATC 9 cut(s) 128, 763, 1178, 1585, 2014, 2260, 2788, 2845, 3107
BstNI CCWGG 3 cut(s) 2032, 2469, 4266
BstNSI RCATGY 7 cut(s) 246, 614, 817, 1403, 1448, 2342, 3000
BstSCI CCNGG 3 cut(s) 2030, 2467, 4264
BstSFI CTRYAG 4 cut(s) 558, 2478, 3311, 3747
BstSLI GKGCMC 2 cut(s) 1479, 3155
BstUI CGCG 3 cut(s) 1224, 2102, 4056
BstV2I GAAGAC 6 cut(s) 342, 1221, 2268, 2537, 3317, 3351
BstX2I RGATCY 4 cut(s) 128, 1585, 2788, 3107
BstXI CCANNNNNNTGG 2 cut(s) 1486, 2744
BstYI RGATCY 4 cut(s) 128, 1585, 2788, 3107
BstZ17I GTATAC 1 cut(s) 3071
Bsu15I ATCGAT 1 cut(s) 945
BsuRI GGCC 6 cut(s) 654, 1264, 1337, 2725, 3153, 3997
BsuTUI ATCGAT 1 cut(s) 945
BtgI CCRYGG 4 cut(s) 1004, 1659, 3770, 4016
BtgZI GCGATG 1 cut(s) 2528
BtsI GCAGTG 1 cut(s) 4325
BtsIMutI CAGTG 7 cut(s) 211, 853, 1957, 2415, 2487, 3706, 4325
BtuMI TCGCGA 1 cut(s) 4056
BveI ACCTGC 3 cut(s) 291, 565, 896
CaiI CAGNNNCTG 3 cut(s) 566, 1307, 3878
CfoI GCGC 3 cut(s) 2056, 2750, 4344
Cfr13I GGNCC 7 cut(s) 685, 1001, 1335, 2656, 3151, 3152, 3995
ClaI ATCGAT 1 cut(s) 945
CseI GACGC 3 cut(s) 738, 3884, 4206
Csp6I GTAC 9 cut(s) 1095, 1287, 1344, 1794, 2139, 3233, 3300, 3870, 3955
CviQI GTAC 9 cut(s) 1095, 1287, 1344, 1794, 2139, 3233, 3300, 3870, 3955
DdeI CTNAG 8 cut(s) 287, 1200, 1281, 1519, 1701, 2714, 2910, 3075
DpnI GATC 9 cut(s) 130, 765, 1180, 1587, 2016, 2262, 2790, 2847, 3109
DpnII GATC 9 cut(s) 128, 763, 1178, 1585, 2014, 2260, 2788, 2845, 3107
DraI TTTAAA 4 cut(s) 21, 1438, 2397, 3604
DraIII CACNNNGTG 1 cut(s) 4315
EaeI YGGCCR 2 cut(s) 652, 2723
Eam1104I CTCTTC 1 cut(s) 3398
EarI CTCTTC 1 cut(s) 3398
Ecl136II GAGCTC 1 cut(s) 2040
Eco130I CCWWGG 7 cut(s) 1004, 1338, 1659, 2347, 3657, 3770, 4016
Eco24I GRGCYC 2 cut(s) 2042, 3155
Eco32I GATATC 1 cut(s) 1060
Eco47I GGWCC 3 cut(s) 685, 1001, 2656
Eco53kI GAGCTC 1 cut(s) 2040
Eco57I CTGAAG 6 cut(s) 471, 1827, 2490, 2682, 3216, 3303
Eco88I CYCGRG 1 cut(s) 4073
EcoICRI GAGCTC 1 cut(s) 2040
EcoO109I RGGNCCY 3 cut(s) 685, 2656, 3152
EcoRII CCWGG 3 cut(s) 2030, 2467, 4264
EcoRV GATATC 1 cut(s) 1060
EcoT14I CCWWGG 7 cut(s) 1004, 1338, 1659, 2347, 3657, 3770, 4016
EcoT22I ATGCAT 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 2042, 3155
ErhI CCWWGG 7 cut(s) 1004, 1338, 1659, 2347, 3657, 3770, 4016
FalI AAGNNNNNCTT 4 cut(s) 521, 553, 3884, 3916
FaqI GGGAC 5 cut(s) 517, 671, 1641, 2365, 2642
FauI CCCGC 1 cut(s) 1164
FauNDI CATATG 2 cut(s) 3065, 3147
FblI GTMKAC 3 cut(s) 2113, 2636, 3070
FriOI GRGCYC 2 cut(s) 2042, 3155
GlaI GCGC 3 cut(s) 2055, 2749, 4343
GsuI CTGGAG 1 cut(s) 3476
HaeII RGCGCY 2 cut(s) 2751, 4345
HaeIII GGCC 6 cut(s) 654, 1264, 1337, 2725, 3153, 3997
HapII CCGG 1 cut(s) 4286
HgaI GACGC 3 cut(s) 738, 3884, 4206
HhaI GCGC 3 cut(s) 2056, 2750, 4344
Hin6I GCGC 3 cut(s) 2054, 2748, 4342
HinP1I GCGC 3 cut(s) 2054, 2748, 4342
HincII GTYRAC 3 cut(s) 534, 2637, 3685
HindII GTYRAC 3 cut(s) 534, 2637, 3685
HindIII AAGCTT 1 cut(s) 2130
HpaII CCGG 1 cut(s) 4286
HpyCH4IV ACGT 4 cut(s) 87, 1312, 1373, 2923
HpyF3I CTNAG 8 cut(s) 287, 1200, 1281, 1519, 1701, 2714, 2910, 3075
HpySE526I ACGT 4 cut(s) 87, 1312, 1373, 2923
HspAI GCGC 3 cut(s) 2054, 2748, 4342
KflI GGGWCCC 1 cut(s) 685
Kzo9I GATC 9 cut(s) 128, 763, 1178, 1585, 2014, 2260, 2788, 2845, 3107
LmnI GCTCC 6 cut(s) 103, 868, 1144, 2158, 3037, 4288
MaeII ACGT 4 cut(s) 87, 1312, 1373, 2923
MalI GATC 9 cut(s) 130, 765, 1180, 1587, 2016, 2262, 2790, 2847, 3109
MbiI CCGCTC 1 cut(s) 1615
MboI GATC 9 cut(s) 128, 763, 1178, 1585, 2014, 2260, 2788, 2845, 3107
MflI RGATCY 4 cut(s) 128, 1585, 2788, 3107
MhlI GDGCHC 5 cut(s) 95, 1216, 1479, 2042, 3155
MlsI TGGCCA 2 cut(s) 654, 2725
MluNI TGGCCA 2 cut(s) 654, 2725
MlyI GAGTC 8 cut(s) 80, 644, 1235, 2282, 2288, 2360, 3690, 4045
MmeI TCCRAC 4 cut(s) 2805, 2906, 3279, 3392
Mox20I TGGCCA 2 cut(s) 654, 2725
Mph1103I ATGCAT 1 cut(s) 120
MroXI GAANNNNTTC 3 cut(s) 1413, 3742, 4025
MscI TGGCCA 2 cut(s) 654, 2725
MslI CAYNNNNRTG 9 cut(s) 63, 1009, 1133, 1404, 1962, 2499, 2742, 3084, 3794
Msp20I TGGCCA 2 cut(s) 654, 2725
MspA1I CMGCKG 2 cut(s) 491, 4184
MspI CCGG 1 cut(s) 4286
MspR9I CCNGG 3 cut(s) 2032, 2469, 4266
Mva1269I GAATGC 4 cut(s) 37, 1025, 2383, 4122
MvaI CCWGG 3 cut(s) 2032, 2469, 4266
MvnI CGCG 3 cut(s) 1224, 2102, 4056
NcoI CCATGG 4 cut(s) 1004, 1659, 3770, 4016
NdeI CATATG 2 cut(s) 3065, 3147
NdeII GATC 9 cut(s) 128, 763, 1178, 1585, 2014, 2260, 2788, 2845, 3107
NheI GCTAGC 1 cut(s) 1514
NmeAIII GCCGAG 1 cut(s) 3206
NmuCI GTSAC 6 cut(s) 245, 302, 1706, 1939, 3421, 4218
NruI TCGCGA 1 cut(s) 4056
NsiI ATGCAT 1 cut(s) 120
NspI RCATGY 7 cut(s) 246, 614, 817, 1403, 1448, 2342, 3000
NspV TTCGAA 1 cut(s) 1529
PaeR7I CTCGAG 1 cut(s) 4073
PciI ACATGT 2 cut(s) 1399, 2996
PcsI WCGNNNNNNNCGW 1 cut(s) 1370
PctI GAATGC 4 cut(s) 37, 1025, 2383, 4122
PdmI GAANNNNTTC 3 cut(s) 1413, 3742, 4025
PflFI GACNNNGTC 1 cut(s) 3052
PflMI CCANNNNNTGG 1 cut(s) 3374
PleI GAGTC 8 cut(s) 79, 643, 1234, 2281, 2288, 2360, 3689, 4045
PpsI GAGTC 8 cut(s) 79, 643, 1234, 2281, 2288, 2360, 3689, 4045
PpuMI RGGWCCY 2 cut(s) 685, 2656
PscI ACATGT 2 cut(s) 1399, 2996
Psp124BI GAGCTC 1 cut(s) 2042
Psp1406I AACGTT 1 cut(s) 2923
Psp5II RGGWCCY 2 cut(s) 685, 2656
Psp6I CCWGG 3 cut(s) 2030, 2467, 4264
PspGI CCWGG 3 cut(s) 2030, 2467, 4264
PspOMI GGGCCC 1 cut(s) 3151
PspPI GGNCC 7 cut(s) 685, 1001, 1335, 2656, 3151, 3152, 3995
PspPPI RGGWCCY 2 cut(s) 685, 2656
PstI CTGCAG 3 cut(s) 562, 3315, 3751
PstNI CAGNNNCTG 3 cut(s) 566, 1307, 3878
PsuI RGATCY 4 cut(s) 128, 1585, 2788, 3107
PsyI GACNNNGTC 1 cut(s) 3052
PvuII CAGCTG 1 cut(s) 491
RruI TCGCGA 1 cut(s) 4056
RsaI GTAC 9 cut(s) 1096, 1288, 1345, 1795, 2140, 3234, 3301, 3871, 3956
RsaNI GTAC 9 cut(s) 1095, 1287, 1344, 1794, 2139, 3233, 3300, 3870, 3955
RseI CAYNNNNRTG 9 cut(s) 63, 1009, 1133, 1404, 1962, 2499, 2742, 3084, 3794
SacI GAGCTC 1 cut(s) 2042
SalI GTCGAC 1 cut(s) 2635
Sau3AI GATC 9 cut(s) 128, 763, 1178, 1585, 2014, 2260, 2788, 2845, 3107
Sau96I GGNCC 7 cut(s) 685, 1001, 1335, 2656, 3151, 3152, 3995
SbfI CCTGCAGG 1 cut(s) 3315
SchI GAGTC 8 cut(s) 80, 644, 1235, 2282, 2288, 2360, 3690, 4045
ScrFI CCNGG 3 cut(s) 2032, 2469, 4266
SdaI CCTGCAGG 1 cut(s) 3315
SduI GDGCHC 5 cut(s) 95, 1216, 1479, 2042, 3155
SfcI CTRYAG 4 cut(s) 558, 2478, 3311, 3747
Sfr274I CTCGAG 1 cut(s) 4073
SfuI TTCGAA 1 cut(s) 1529
SinI GGWCC 3 cut(s) 685, 1001, 2656
SlaI CTCGAG 1 cut(s) 4073
SmiMI CAYNNNNRTG 9 cut(s) 63, 1009, 1133, 1404, 1962, 2499, 2742, 3084, 3794
SmlI CTYRAG 5 cut(s) 2296, 2316, 3010, 3759, 4073
SmoI CTYRAG 5 cut(s) 2296, 2316, 3010, 3759, 4073
SpeI ACTAGT 1 cut(s) 1730
Sse8387I CCTGCAGG 1 cut(s) 3315
SsiI CCGC 6 cut(s) 185, 1171, 1615, 2102, 2681, 4184
SspI AATATT 2 cut(s) 197, 2764
SstI GAGCTC 1 cut(s) 2042
StyD4I CCNGG 3 cut(s) 2030, 2467, 4264
StyI CCWWGG 7 cut(s) 1004, 1338, 1659, 2347, 3657, 3770, 4016
TaiI ACGT 4 cut(s) 90, 1315, 1376, 2926
TatI WGTACW 3 cut(s) 1094, 1793, 3232
TauI GCSGC 1 cut(s) 188
TscAI CASTG 7 cut(s) 211, 853, 1964, 2415, 2487, 3706, 4332
TseFI GTSAC 6 cut(s) 245, 302, 1706, 1939, 3421, 4218
Tsp45I GTSAC 6 cut(s) 245, 302, 1706, 1939, 3421, 4218
TspGWI ACGGA 2 cut(s) 2349, 3808
TspRI CASTG 7 cut(s) 211, 853, 1964, 2415, 2487, 3706, 4332
Tth111I GACNNNGTC 1 cut(s) 3052
Van91I CCANNNNNTGG 1 cut(s) 3374
VpaK11BI GGWCC 3 cut(s) 685, 1001, 2656
XceI RCATGY 7 cut(s) 246, 614, 817, 1403, 1448, 2342, 3000
XhoI CTCGAG 1 cut(s) 4073
XmiI GTMKAC 3 cut(s) 2113, 2636, 3070
XmnI GAANNNNTTC 3 cut(s) 1413, 3742, 4025
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.