Rroxscaffold_4G00276570
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000769
Physical Location & Seq
Forward (+)
132999 .. 140247
7249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276570.1

Sequence Viewer

Length: 3972 bp
ATGGGGTCAAAGGCTGTTGAAGTTTCTGATGAAACCTGTCATGTTAGCGGGGCGAATCATTATTCTGTCAATGTGAGTGATAATTTGTCTTCTTTCAAGAGCAAGGCATGTGACAGTTTACAGCATACCACCAGTGAGACAAGTAACCTACTTAGCGTCAATTCGAGTTATGATTCTTTGTCTGAAAATGCTGAAAGCAGAGCACCCCTAAGGTTTTCTAATACTTCTGATGATTTAGAAGGTGTTGAGAAACTTCCAAATACATACAATGATTCTAAAGTTGTTCAAGTTCATGAGGATAACATATCATGTGTAAGTAAAGCGAATGATACAAATACAGCATTCAGTAATCATAACAGGAATGTAGAGAGGAAGAACCTTGCTTGTAGTTTAGCTTCAGTCGGTAGTGTAGGCCCTGAAGAATTTGGAAAGCCACCCAATTCAGTCTTCTTGGAGATTCCTCCTTTGAAAGATCCAAGTTCTGGCAGTGGCAGATCGAAGGAGAGAGTGCCAGAATTCTCTGGACTTATGGACTCATCATTAACAAAAGAAGCAATTACTAGCCAGAAATTTGCATCTTATAAAGGTTTGGAGGCCTCTACAAAAATTTGTCCAAAGTTTGAAGCAGAGACCAGTGATGATGACCAAGACTCAAAACAGGAAGCTTTGAAATGTTCAGATCATGGTGAACAGGATATTAAGTCTAGTCAGGTGGTTGACGCAGCTGCTATGCAGCCTTTGCAATCCGTCAATGGTGATGAAAGTGATGAATCTGATATTGTGGAGCATGATGTAAAGGTATGTGATATTTGTGGGGACGCAGGTCGTGAAGAATCGCTTGCCACTTGTAGTAGATGCAGCGACGGTGCAGAACACATCTATTGCATGCGAAAAATGCTTCGGAGAGTTCCTAAAGGTGACTGGTTGTGTGAGGAATGCAAGTTCACTGAGCAAACTGAAAACCAGAAGCAAGGTACAGATTTAGATGGAAACAGAATGAAGAAAGCCATCTTGAGTACACAGCTCTCTAATAAGAGACGTGCAGACAATACAGAAGCGGCTCCTTCTTCTAAAAGGCAGACTCTTGAGACTCGGGTGGGATCACCAAAGCCGCCCAGCCCTAAGAGAACAGTTGCATTATCACGTGAGTCTTCATTCAAGAGTATGGATAAGGATAAGTTGAAGTCCGCTTATCAGACTTCTCTGTCCACTAATGATGTATCAGAAGCTGCACGCTCTCCAACAACCGGTCCTCGGCTTCAAACAGCCAAGGGTGCATTGTTAAAGTCAAATTCCTTCAACATGTATACCAAACCAAAGGTTAAACTTGTAGACAACATTGTTCCTCAGAAGCAGAAGGGGTCTAAAGAGCATGGTACTCTTGATATGAAGGAGAGGACAGCCAGAATGATGGGCAAATCTGTGTCATTCAGATCTCCTGACTCGGGGCGTTCCAATGTGTCCGATTCAAAAGTTAAAATGCTTTCATCAAAATTTAACCCTCTTCAAGATCTAAAAGGAATGAAACAACTAAAAGAGCGGAGCACAGTTGAAAGAAAAAATTTGTCTAAACTAGAACGTCCTCCAGTTAGTTTGATAACATCAAGTGCTATTGTTTCAACACCTAAGGTTGACCAAGCATCCCGTGGTGATACCAGTTTGCTTTCATCTGTGAGCAACCTTCGAGAGCATAAGGCTCAGCTATCTGATGGAAAATTAAATACGTCATCAAAAGCAATAAGTAGTCTAACTCGTAAAGGTGTTGAAACTCAAAGTTCTCCAGGTGGTTCTTCACCTATTAGTGGAATGTGTGGTGCTGCTTCTGAAGAAAAGTCGAACCAAGTTATCTCTAACAATGAACCTTTATCCAGCTATTCTCAGCCTGTTGAGAAAGTACCTGCTGATGATGAAGGGAAATTAGAAGATACACTTCGATCATGGGAAATGACAAATCAGACTGATAAAACCAGGGAGACCTCTGTTCGCAGTAGGCCGATTGTTGCAGCTAGTTCAAAAAGTCTTTTCTGTTCAATTTGTAAGGAGATTGGTCATACTGCTGAATCTTGCAAAAGCGGGATTTCACAGGCTAGTGTTACTGATGTTTCTCCTCCAAGAAGTTACAGGGAGGAGGTGCCAAGAGGTAGTAGGTTGAAAGTTGCAATTCATGCTGCTTTGCTTAGAAAGCCTGAAATATACAAAAAGAAGACATTACCAGATCAATCTGATGAATTGTCCGCATCCAACATGGAATCAAGTTCTGAAGTAGCTTCTCCAGAGTTTGTATCAAATATGTTGAATAATAACACATATACTGAAGGATCACATGATGGAGAAGCAATTCCTGGGAGTTCTACTTCCGATTTCTACAAGAATACATTACAGCCCGCTAATTCTGTGATTCCTTCCAGGGTGGTAGACTCTGGTTCTGTTCTTCCTTCTTTTGGGAAGTCAACAATGAGAGATTTGCAGAGACAGGCTTCAGTGGGGATGTCTGGGAGCTTTGAACTGCAAAGAGGTGGAAATATTCTGGATCTATGTGGTGGAATTCAAGCTCATTTATCGACTTGTGCATCACCAAAAGTACTTGAAGTGGTGAACAAATTTCCGCACAAAGTTCCTCTGAAAGAAGTACCTCGTTTAAGTGTATGGCCAGCACAATTTCATCAGAGTGGTGTTAGAGAGGACAATATAGCACTTTACTTCTTTGCCAAAGATCTTGAGAGGGAGACAAGGGTGCATTACATAGATTCTACTAGAACATTAGATGTTCCTGGCTTGAATGATGTCTCATTGGACAATGACACTCCCACTGTGATGGCTTTATCCAAGAACCTGCACGTTCCCGAGCATATAGGTGCAGCTGACAGGTTGTCTGGTGCAGCCTCTGCATCCAAGTCCCCAGAGCCTGTGGTTCTTATGGTTAGCAAGGATCTTGAGAGCAAAGATACGTATCCGGAAGAGATGTGTTTTGGTTCAAAAGAGAACTTGGTGCTACAGGATAGTAGGGTTGACTTCGAACACACAACAAACAATGCAGGCTTGTCTGGAGGAGTTAAACGCACCACTCCTTCGCTGCAAGAAGTTTGCCTTCGAGAGAGCAGACTAGACACCGTAGGGCCTGTTGGTATGGAGAGAATTGCAGATAGAAAGAACATGGTTGGTGTCCCAGGAGGTGACGAGGAGGTGATTTTGGAAAAAGTGAACATAGACAGGGATGAATTTAAACAAGTGAAGGAGCTGAAGAGAGAAGTTGGATCTAAAGAAATGGAAACAGCTTTTGTGAGAGACTTGACAACAAGAGTCAACTCTTGTCAGTCTAATAATAGAATACATCCCCATATAGATCTGTCAGAGCCAGCAGCTTCTTCCACCACAAATCAAGAAATGCCATGGAATGTTGTGAATACTATGCCAAGAGATGGACAGAGTGATAGTAAGAAGCCAAAACTAGATACTAGTGAACTACATGGTTTTAGTACTTCAAAGTCTGTTCTTTCTACTTCAGAAGAGGAGATGACTTGTCCTGAAGCATGTGATGAAAAAGTTATTCCAGAGGACTTGGGAACTACTGAAAGGCACTTCTTTCCTGTGGAATCAAGGAATGTCCAGGATTTTCAGATGGACAACAACTCTCTGCCATGGAAAAATTTCTCGTCAGGAAATGAGGATAAGTCTGACGGGTTTCCAAGTCTCGAGCTTGCTCTCAGGGCAGAAACAAAACCACCAAGTAAGGGAAATCTGCCTTTCTTTGTCGGGTTAGGTGATGAGAGAGATCACCAGGATAGGTCTTTAGAAAAAACACTTGGTGAGAAAGAGGATGATGTCTCTGCTTCACTTTCACTCTCTCTTTCTTTCCCCTTCCCAGACAAGGAACAACCTGTGAAACCTGTTACAAAATCTGAGCAACTTCTGCCTGAAAGGCACCACGTGAATACATCACTGCTTCTGTTTGGGCGCTTTCCAGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

1323

Amino Acids

144.9

Weight (kDa)

5.81

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 831 - 911 6.5e-23 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02890 AT3G02890 AT3G02890 AT3G02890 AT5G16680 AT5G16680
fragaria_vesca FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220 FvH4_7g34220
malus_domestica MD01G1238900.v1.1 MD07G1310800.v1.1
prunus_persica Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1 Prupe.2G329000_v2.0.a1
pyrus_communis pycom01g24640 pycom07g28310
rosa_chinensis RchiOBHm_Chr1g0384581
rosa_laevigata RLG00000026030
rosa_multiflora Rmu_sc0006005.1_g000016
rosa_roxburghii Rroxscaffold_4G00276570
rosa_rugosa Rorug01G0449400 Rorug01G0449500
rosa_samantha Rh1AG474300 Rh1BG432300 Rh1CG445500 Rh1DG464900
rosa_wichuraiana Rw1G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AasI GACNNNNNNGTC 1 cut(s) 1204
Acc36I ACCTGC 3 cut(s) 812, 1906, 2841
AccB1I GGYRCC 2 cut(s) 2131, 3921
AccB7I CCANNNNNTGG 2 cut(s) 482, 3419
AccBSI CCGCTC 1 cut(s) 1540
AccI GTMKAC 3 cut(s) 1307, 1332, 2415
AccIII TCCGGA 1 cut(s) 2953
AciI CCGC 9 cut(s) 48, 1058, 1112, 1188, 1540, 2073, 2235, 2385, 2606
AclWI GGATC 6 cut(s) 467, 1108, 2326, 2538, 2937, 3262
AcoI YGGCCR 1 cut(s) 2648
AcuI CTGAAG 9 cut(s) 381, 438, 1845, 2280, 2334, 2463, 3260, 3486, 3546
AcvI CACGTG 2 cut(s) 1145, 3928
AdeI CACNNNGTG 2 cut(s) 3806, 3928
AfaI GTAC 7 cut(s) 976, 1018, 1378, 1896, 2583, 2631, 3478
AfiI CCNNNNNNNGG 9 cut(s) 482, 1247, 1254, 1445, 1802, 2441, 3419, 3731, 3868
AflIII ACRYGT 1 cut(s) 1302
AgeI ACCGGT 1 cut(s) 1247
AhdI GACNNNNNGTC 1 cut(s) 2869
AhlI ACTAGT 1 cut(s) 3455
AjiI CACGTC 1 cut(s) 1040
AjnI CCWGG 8 cut(s) 1780, 1967, 2341, 2405, 2770, 3166, 3606, 3777
AjuI GAANNNNNNNTTGG 4 cut(s) 431, 463, 3786, 3818
AloI GAACNNNNNNTCC 2 cut(s) 926, 958
Alw21I GWGCWC 2 cut(s) 205, 1547
AlwI GGATC 6 cut(s) 467, 1108, 2326, 2538, 2937, 3262
AlwNI CAGNNNCTG 3 cut(s) 1229, 2885, 2906
Ama87I CYCGRG 4 cut(s) 1092, 1444, 2843, 3692
Aor13HI TCCGGA 1 cut(s) 2953
AoxI GGCC 5 cut(s) 412, 594, 1991, 2648, 3116
AsiGI ACCGGT 1 cut(s) 1247
Asp700I GAANNNNTTC 2 cut(s) 2337, 3647
AspLEI GCGC 1 cut(s) 3957
AspS9I GGNCC 3 cut(s) 413, 1250, 3116
AsuII TTCGAA 1 cut(s) 3015
AvaI CYCGRG 4 cut(s) 1092, 1444, 2843, 3692
AvaII GGWCC 1 cut(s) 1250
AxyI CCTNAGG 2 cut(s) 209, 1626
BalI TGGCCA 1 cut(s) 2650
BanI GGYRCC 2 cut(s) 2131, 3921
BarI GAAGNNNNNNTAC 2 cut(s) 379, 411
BbrPI CACGTG 2 cut(s) 1145, 3928
BbsI GAAGAC 4 cut(s) 81, 439, 1143, 2210
Bbv12I GWGCWC 2 cut(s) 205, 1547
BccI CCATC 8 cut(s) 980, 1016, 1405, 1703, 2321, 2809, 3413, 3613
BciT130I CCWGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
BciVI GTATCC 1 cut(s) 2961
BcuI ACTAGT 1 cut(s) 3455
BfaI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2754, 3104, 3449, 3456
BfmI CTRYAG 1 cut(s) 2993
BfoI RGCGCY 1 cut(s) 3958
BfuAI ACCTGC 3 cut(s) 812, 1906, 2841
BfuI GTATCC 1 cut(s) 2961
BglI GCCNNNNNGGC 1 cut(s) 3919
BglII AGATCT 4 cut(s) 1433, 1510, 2713, 3343
BlpI GCTNAGC 1 cut(s) 1698
BmcAI AGTACT 2 cut(s) 2583, 3478
Bme1390I CCNGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
Bme18I GGWCC 1 cut(s) 1250
BmeRI GACNNNNNGTC 1 cut(s) 2869
BmeT110I CYCGRG 4 cut(s) 1092, 1444, 2843, 3692
BmgBI CACGTC 1 cut(s) 1040
BmgT120I GGNCC 3 cut(s) 413, 1250, 3116
BmiI GGNNCC 3 cut(s) 1062, 2133, 3923
BmrFI CCNGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
BmsI GCATC 6 cut(s) 584, 845, 1649, 2246, 2579, 2897
BoxI GACNNNNGTC 1 cut(s) 822
BpiI GAAGAC 4 cut(s) 81, 439, 1143, 2210
BpmI CTGGAG 4 cut(s) 1569, 1764, 2256, 3066
Bpu1102I GCTNAGC 1 cut(s) 1698
Bpu14I TTCGAA 1 cut(s) 3015
BpuEI CTTGAG 4 cut(s) 1033, 1106, 2738, 2954
BsaAI YACGTR 3 cut(s) 1145, 2949, 3928
BsaBI GATNNNNATC 1 cut(s) 2949
BsaI GGTCTC 2 cut(s) 623, 1967
BsaJI CCNNGG 9 cut(s) 1253, 1269, 1645, 1968, 2342, 2406, 3166, 3389, 3638
BsaWI WCCGGW 2 cut(s) 1247, 2953
Bsc4I CCNNNNNNNGG 9 cut(s) 482, 1247, 1254, 1445, 1802, 2441, 3419, 3731, 3868
Bse118I RCCGGY 1 cut(s) 1247
Bse1I ACTGG 5 cut(s) 132, 633, 926, 1586, 1656
Bse21I CCTNAGG 2 cut(s) 209, 1626
Bse8I GATNNNNATC 1 cut(s) 2949
BseAI TCCGGA 1 cut(s) 2953
BseBI CCWGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
BseDI CCNNGG 9 cut(s) 1253, 1269, 1645, 1968, 2342, 2406, 3166, 3389, 3638
BseGI GGATG 7 cut(s) 1640, 2237, 2493, 2888, 3220, 3331, 3823
BseJI GATNNNNATC 1 cut(s) 2949
BseLI CCNNNNNNNGG 9 cut(s) 482, 1247, 1254, 1445, 1802, 2441, 3419, 3731, 3868
BseMII CTCAG 6 cut(s) 939, 1361, 1712, 1892, 3718, 3891
BseNI ACTGG 5 cut(s) 132, 633, 926, 1586, 1656
BseRI GAGGAG 5 cut(s) 2097, 2141, 3063, 3194, 3524
BseYI CCCAGC 1 cut(s) 1115
BsgI GTGCAG 6 cut(s) 888, 1062, 1215, 2819, 2877, 2898
BshFI GGCC 5 cut(s) 414, 596, 1993, 2650, 3118
BshNI GGYRCC 2 cut(s) 2131, 3921
BshTI ACCGGT 1 cut(s) 1247
BsiHKAI GWGCWC 2 cut(s) 205, 1547
BsiHKCI CYCGRG 4 cut(s) 1092, 1444, 2843, 3692
BsiSI CCGG 2 cut(s) 1248, 2954
BslFI GGGAC 3 cut(s) 830, 2881, 3149
BslI CCNNNNNNNGG 9 cut(s) 482, 1247, 1254, 1445, 1802, 2441, 3419, 3731, 3868
BsmBI CGTCTC 1 cut(s) 1030
BsmFI GGGAC 3 cut(s) 830, 2881, 3149
BsmI GAATGC 2 cut(s) 341, 941
BsnI GGCC 5 cut(s) 414, 596, 1993, 2650, 3118
Bso31I GGTCTC 2 cut(s) 623, 1967
BsoBI CYCGRG 4 cut(s) 1092, 1444, 2843, 3692
Bsp119I TTCGAA 1 cut(s) 3015
Bsp1286I GDGCHC 2 cut(s) 205, 1547
Bsp13I TCCGGA 1 cut(s) 2953
Bsp1720I GCTNAGC 1 cut(s) 1698
Bsp19I CCATGG 2 cut(s) 3389, 3638
BspACI CCGC 9 cut(s) 48, 1058, 1112, 1188, 1540, 2073, 2235, 2385, 2606
BspANI GGCC 5 cut(s) 414, 596, 1993, 2650, 3118
BspCNI CTCAG 6 cut(s) 940, 1360, 1711, 1891, 3717, 3892
BspEI TCCGGA 1 cut(s) 2953
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 1062, 2133, 3923
BspMI ACCTGC 3 cut(s) 812, 1906, 2841
BspPI GGATC 6 cut(s) 467, 1108, 2326, 2538, 2937, 3262
BspT104I TTCGAA 1 cut(s) 3015
BspT107I GGYRCC 2 cut(s) 2131, 3921
BspTNI GGTCTC 2 cut(s) 623, 1967
BsrBI CCGCTC 1 cut(s) 1540
BsrFI RCCGGY 1 cut(s) 1247
BsrI ACTGG 5 cut(s) 132, 633, 926, 1586, 1656
BssAI RCCGGY 1 cut(s) 1247
BssECI CCNNGG 9 cut(s) 1253, 1269, 1645, 1968, 2342, 2406, 3166, 3389, 3638
BssNAI GTATAC 1 cut(s) 1308
BssT1I CCWWGG 3 cut(s) 1269, 3389, 3638
Bst1107I GTATAC 1 cut(s) 1308
Bst2UI CCWGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
Bst4CI ACNGT 6 cut(s) 116, 866, 1132, 1549, 2812, 3112
Bst6I CTCTTC 4 cut(s) 1509, 2952, 3236, 3501
BstAPI GCANNNNNTGC 4 cut(s) 739, 2165, 2885, 3910
BstBAI YACGTR 3 cut(s) 1145, 2949, 3928
BstBI TTCGAA 1 cut(s) 3015
BstC8I GCNNGC 8 cut(s) 840, 887, 1234, 2385, 2652, 3037, 3357, 3699
BstDSI CCRYGG 3 cut(s) 1645, 3389, 3638
BstF5I GGATG 7 cut(s) 1640, 2237, 2493, 2888, 3220, 3331, 3823
BstH2I RGCGCY 1 cut(s) 3958
BstHHI GCGC 1 cut(s) 3957
BstMWI GCNNNNNNNGC 9 cut(s) 739, 895, 1274, 2165, 2182, 2885, 3707, 3910, 3919
BstNI CCWGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
BstNSI RCATGY 4 cut(s) 111, 889, 1306, 3534
BstPAI GACNNNNGTC 1 cut(s) 822
BstSCI CCNGG 8 cut(s) 1780, 1967, 2341, 2405, 2770, 3166, 3606, 3777
BstSFI CTRYAG 1 cut(s) 2993
BstSNI TACGTA 1 cut(s) 2949
BstV2I GAAGAC 4 cut(s) 81, 439, 1143, 2210
BstX2I RGATCY 8 cut(s) 472, 1433, 1510, 2530, 2713, 2929, 3254, 3343
BstXI CCANNNNNNTGG 2 cut(s) 1411, 2815
BstYI RGATCY 8 cut(s) 472, 1433, 1510, 2530, 2713, 2929, 3254, 3343
BstZ17I GTATAC 1 cut(s) 1308
Bsu36I CCTNAGG 2 cut(s) 209, 1626
BsuI GTATCC 1 cut(s) 2961
BsuRI GGCC 5 cut(s) 414, 596, 1993, 2650, 3118
BtgI CCRYGG 3 cut(s) 1645, 3389, 3638
BtrI CACGTC 1 cut(s) 1040
BtsCI GGATG 7 cut(s) 1640, 2237, 2493, 2888, 3220, 3331, 3823
BtsI GCAGTG 2 cut(s) 493, 3938
BtsIMutI CAGTG 7 cut(s) 139, 493, 640, 945, 2487, 2808, 3938
BveI ACCTGC 3 cut(s) 812, 1906, 2841
Cac8I GCNNGC 8 cut(s) 840, 887, 1234, 2385, 2652, 3037, 3357, 3699
CaiI CAGNNNCTG 3 cut(s) 1229, 2885, 2906
CciI TCATGA 1 cut(s) 292
CfoI GCGC 1 cut(s) 3957
Cfr10I RCCGGY 1 cut(s) 1247
Cfr13I GGNCC 3 cut(s) 413, 1250, 3116
CseI GACGC 3 cut(s) 145, 728, 827
Csp6I GTAC 7 cut(s) 975, 1017, 1377, 1895, 2582, 2630, 3477
CspAI ACCGGT 1 cut(s) 1247
CviQI GTAC 7 cut(s) 975, 1017, 1377, 1895, 2582, 2630, 3477
DraI TTTAAA 1 cut(s) 3223
DraIII CACNNNGTG 2 cut(s) 3806, 3928
DrdI GACNNNNNNGTC 1 cut(s) 1204
DriI GACNNNNNGTC 1 cut(s) 2869
DseDI GACNNNNNNGTC 1 cut(s) 1204
EaeI YGGCCR 1 cut(s) 2648
Eam1104I CTCTTC 4 cut(s) 1509, 2952, 3236, 3501
Eam1105I GACNNNNNGTC 1 cut(s) 2869
EarI CTCTTC 4 cut(s) 1509, 2952, 3236, 3501
Eco105I TACGTA 1 cut(s) 2949
Eco130I CCWWGG 3 cut(s) 1269, 3389, 3638
Eco147I AGGCCT 1 cut(s) 596
Eco31I GGTCTC 2 cut(s) 623, 1967
Eco47I GGWCC 1 cut(s) 1250
Eco57I CTGAAG 9 cut(s) 381, 438, 1845, 2280, 2334, 2463, 3260, 3486, 3546
Eco72I CACGTG 2 cut(s) 1145, 3928
Eco81I CCTNAGG 2 cut(s) 209, 1626
Eco88I CYCGRG 4 cut(s) 1092, 1444, 2843, 3692
EcoO109I RGGNCCY 2 cut(s) 413, 3116
EcoRI GAATTC 2 cut(s) 515, 2544
EcoRII CCWGG 8 cut(s) 1780, 1967, 2341, 2405, 2770, 3166, 3606, 3777
EcoT14I CCWWGG 3 cut(s) 1269, 3389, 3638
ErhI CCWWGG 3 cut(s) 1269, 3389, 3638
Esp3I CGTCTC 1 cut(s) 1030
FalI AAGNNNNNCTT 6 cut(s) 822, 854, 1914, 1946, 3072, 3104
FaqI GGGAC 3 cut(s) 830, 2881, 3149
FauI CCCGC 3 cut(s) 41, 2066, 2392
FblI GTMKAC 3 cut(s) 1307, 1332, 2415
FokI GGATG 7 cut(s) 1627, 2224, 2500, 2875, 3227, 3318, 3830
FspBI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2754, 3104, 3449, 3456
GlaI GCGC 1 cut(s) 3956
GsaI CCCAGC 1 cut(s) 1119
GsuI CTGGAG 4 cut(s) 1569, 1764, 2256, 3066
HaeII RGCGCY 1 cut(s) 3958
HaeIII GGCC 5 cut(s) 414, 596, 1993, 2650, 3118
HapII CCGG 2 cut(s) 1248, 2954
HgaI GACGC 3 cut(s) 145, 728, 827
HhaI GCGC 1 cut(s) 3957
Hin6I GCGC 1 cut(s) 3955
HinP1I GCGC 1 cut(s) 3955
HincII GTYRAC 5 cut(s) 718, 1633, 2451, 3010, 3304
HindII GTYRAC 5 cut(s) 718, 1633, 2451, 3010, 3304
HindIII AAGCTT 1 cut(s) 663
HpaII CCGG 2 cut(s) 1248, 2954
Hpy99I CGWCG 1 cut(s) 866
HpyCH4III ACNGT 6 cut(s) 116, 866, 1132, 1549, 2812, 3112
HpyCH4IV ACGT 7 cut(s) 1039, 1144, 1579, 1724, 2838, 2948, 3927
HpyF10VI GCNNNNNNNGC 9 cut(s) 739, 895, 1274, 2165, 2182, 2885, 3707, 3910, 3919
HpySE526I ACGT 7 cut(s) 1039, 1144, 1579, 1724, 2838, 2948, 3927
HspAI GCGC 1 cut(s) 3955
Kpn2I TCCGGA 1 cut(s) 2953
LmnI GCTCC 5 cut(s) 784, 1066, 1542, 2496, 3235
LweI GCATC 6 cut(s) 584, 845, 1649, 2246, 2579, 2897
MaeI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2754, 3104, 3449, 3456
MaeII ACGT 7 cut(s) 1039, 1144, 1579, 1724, 2838, 2948, 3927
MaeIII GTNAC 7 cut(s) 110, 143, 917, 2092, 2117, 3173, 3889
MbiI CCGCTC 1 cut(s) 1540
MflI RGATCY 8 cut(s) 472, 1433, 1510, 2530, 2713, 2929, 3254, 3343
MhlI GDGCHC 2 cut(s) 205, 1547
MlsI TGGCCA 1 cut(s) 2650
MluNI TGGCCA 1 cut(s) 2650
MlyI GAGTC 8 cut(s) 527, 644, 1075, 1084, 1157, 1436, 2411, 3309
MmeI TCCRAC 3 cut(s) 1265, 2265, 3232
Mox20I TGGCCA 1 cut(s) 2650
MroI TCCGGA 1 cut(s) 2953
MroXI GAANNNNTTC 2 cut(s) 2337, 3647
MscI TGGCCA 1 cut(s) 2650
MslI CAYNNNNRTG 3 cut(s) 2667, 2813, 2853
Msp20I TGGCCA 1 cut(s) 2650
MspA1I CMGCKG 2 cut(s) 725, 2861
MspI CCGG 2 cut(s) 1248, 2954
MspR9I CCNGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
Mva1269I GAATGC 2 cut(s) 341, 941
MvaI CCWGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
MwoI GCNNNNNNNGC 9 cut(s) 739, 895, 1274, 2165, 2182, 2885, 3707, 3910, 3919
NcoI CCATGG 2 cut(s) 3389, 3638
NlaIV GGNNCC 3 cut(s) 1062, 2133, 3923
NmeAIII GCCGAG 1 cut(s) 1234
NmuCI GTSAC 3 cut(s) 110, 917, 3173
NspI RCATGY 4 cut(s) 111, 889, 1306, 3534
NspV TTCGAA 1 cut(s) 3015
PaeI GCATGC 1 cut(s) 889
PaeR7I CTCGAG 1 cut(s) 3692
PagI TCATGA 1 cut(s) 292
PceI AGGCCT 1 cut(s) 596
PciI ACATGT 1 cut(s) 1302
PctI GAATGC 2 cut(s) 341, 941
PdmI GAANNNNTTC 2 cut(s) 2337, 3647
PflMI CCANNNNNTGG 2 cut(s) 482, 3419
PfoI TCCNGGA 1 cut(s) 3606
PinAI ACCGGT 1 cut(s) 1247
PleI GAGTC 8 cut(s) 527, 644, 1075, 1084, 1156, 1436, 2411, 3308
PmaCI CACGTG 2 cut(s) 1145, 3928
PmlI CACGTG 2 cut(s) 1145, 3928
PpsI GAGTC 8 cut(s) 527, 644, 1075, 1084, 1156, 1436, 2411, 3308
Ppu21I YACGTR 3 cut(s) 1145, 2949, 3928
PscI ACATGT 1 cut(s) 1302
PshAI GACNNNNGTC 1 cut(s) 822
PsiI TTATAA 1 cut(s) 582
Psp6I CCWGG 8 cut(s) 1780, 1967, 2341, 2405, 2770, 3166, 3606, 3777
PspCI CACGTG 2 cut(s) 1145, 3928
PspFI CCCAGC 1 cut(s) 1115
PspGI CCWGG 8 cut(s) 1780, 1967, 2341, 2405, 2770, 3166, 3606, 3777
PspN4I GGNNCC 3 cut(s) 1062, 2133, 3923
PspPI GGNCC 3 cut(s) 413, 1250, 3116
PstNI CAGNNNCTG 3 cut(s) 1229, 2885, 2906
PsuI RGATCY 8 cut(s) 472, 1433, 1510, 2530, 2713, 2929, 3254, 3343
PvuII CAGCTG 2 cut(s) 725, 2861
RsaI GTAC 7 cut(s) 976, 1018, 1378, 1896, 2583, 2631, 3478
RsaNI GTAC 7 cut(s) 975, 1017, 1377, 1895, 2582, 2630, 3477
RseI CAYNNNNRTG 3 cut(s) 2667, 2813, 2853
Sau96I GGNCC 3 cut(s) 413, 1250, 3116
ScaI AGTACT 2 cut(s) 2583, 3478
SchI GAGTC 8 cut(s) 527, 644, 1075, 1084, 1157, 1436, 2411, 3309
ScrFI CCNGG 8 cut(s) 1782, 1969, 2343, 2407, 2772, 3168, 3608, 3779
SduI GDGCHC 2 cut(s) 205, 1547
SfaNI GCATC 6 cut(s) 584, 845, 1649, 2246, 2579, 2897
SfcI CTRYAG 1 cut(s) 2993
Sfr274I CTCGAG 1 cut(s) 3692
SfuI TTCGAA 1 cut(s) 3015
SinI GGWCC 1 cut(s) 1250
SlaI CTCGAG 1 cut(s) 3692
SmiMI CAYNNNNRTG 3 cut(s) 2667, 2813, 2853
SmlI CTYRAG 5 cut(s) 1012, 1085, 2717, 2933, 3692
SmoI CTYRAG 5 cut(s) 1012, 1085, 2717, 2933, 3692
SnaBI TACGTA 1 cut(s) 2949
SpeI ACTAGT 1 cut(s) 3455
SphI GCATGC 1 cut(s) 889
SseBI AGGCCT 1 cut(s) 596
SsiI CCGC 9 cut(s) 48, 1058, 1112, 1188, 1540, 2073, 2235, 2385, 2606
SspI AATATT 1 cut(s) 2524
SspMI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2754, 3104, 3449, 3456
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 8 cut(s) 1780, 1967, 2341, 2405, 2770, 3166, 3606, 3777
StyI CCWWGG 3 cut(s) 1269, 3389, 3638
TaaI ACNGT 6 cut(s) 116, 866, 1132, 1549, 2812, 3112
TaiI ACGT 7 cut(s) 1042, 1147, 1582, 1727, 2841, 2951, 3930
TaqI TCGA 9 cut(s) 164, 497, 1684, 1835, 1933, 2561, 3015, 3091, 3693
TatI WGTACW 3 cut(s) 1016, 2581, 3476
TauI GCSGC 2 cut(s) 1061, 1114
TscAI CASTG 7 cut(s) 139, 493, 640, 952, 2487, 2815, 3945
TseFI GTSAC 3 cut(s) 110, 917, 3173
Tsp45I GTSAC 3 cut(s) 110, 917, 3173
TspGWI ACGGA 1 cut(s) 736
TspRI CASTG 7 cut(s) 139, 493, 640, 952, 2487, 2815, 3945
Van91I CCANNNNNTGG 2 cut(s) 482, 3419
VpaK11BI GGWCC 1 cut(s) 1250
XceI RCATGY 4 cut(s) 111, 889, 1306, 3534
XcmI CCANNNNNNNNNTGG 1 cut(s) 1643
XhoI CTCGAG 1 cut(s) 3692
XmiI GTMKAC 3 cut(s) 1307, 1332, 2415
XmnI GAANNNNTTC 2 cut(s) 2337, 3647
XspI CTAG 9 cut(s) 561, 705, 1574, 2007, 2088, 2754, 3104, 3449, 3456
ZrmI AGTACT 2 cut(s) 2583, 3478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.