Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005029

Physical Location & Seq

Genomic Coordinates Forward (+)

1258519 .. 1260871

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGAAGAGAAGTTGTTGAGGTGCTTATGGACCGAAACGCCGACGTTTCAAGCGCTAGAGTTCATGTTGCTCCTAAGATAGCTGCAGAGGAGACTGATGAGGAATTTGAAGTCAAAGAATGCACAGAGGAGAAGTCTCTTTCTGAGAATGCACCAAATGTTGGATCTGCTGAGAGAGTTGGAGCTCAGAAATCACCTAAAACCCGTAATGGAAATGCTAAAGTTTCAAAGCAGCAGGATGCTCCTCTTCTCGCGGTGAGGAAGCCATTGCAACCCGAGAACAAGAAGCATATTGATGACGAAGATAATTGCTCCATTGCTTCTTCCGTTGCAACTTCCATGAGGATGGGTAAGTCTGGATTGACTTATGGAAGTGCTCCAACGTTTAGGAGTGCTCAACGTGCTGAGAAACGCAAGGAGTATTACCAAAAGCTCGAGGAGAAAAACCAAGCGCTTGAAGCTGAGAGGAACGAGCTTGAACAGAGGCAAAAGGATGAACAAGAAGCAGCCTTGAAGCAACTTAGAAAGAATCTCAAGTTCAAGGCTAAACCCGTCCCCAACTTCTACTACGAGGCACCTCCTGCGAAACCTGAGCTCAAGAAGCTTCCTTTGACACGTCCCAAGTCGCCAAAACTGATCCTTTCTCGGAGAAAAAGCTTCAGCGACGCAGTCAGCTCGTCTTCCCGTGAAGAGATTCTGAAGACAGTCTCTAACCGGAACCGACACAGCACTGGAACAGTTCAGAACAAAGACGATGATCACAGGAACAAGAACACCAATGCTGCGCACGACAGCCCTCGTGTCAGATCAGGCAAAGGTAAATCCGGATTGAAACCAGTGAACGAGTCCTCAGAAGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0000904 GO:0001558 GO:0001578 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007163 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009825 GO:0009826 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010031 GO:0010090 GO:0010091 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0022622 GO:0030154 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048364 GO:0048468 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050879 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0097435 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

287

Amino Acids

32.08

Weight (kDa)

9.46

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	132 - 201	1.5e-22	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04630 AT3G04630 AT3G04630 AT5G28646 AT5G28646 AT5G28646
fragaria_vesca	FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600
malus_domestica	MD04G1226800.v1.1 MD12G1243800.v1.1
prunus_persica	Prupe.6G345500_v2.0.a1 Prupe.6G345500_v2.0.a1
pyrus_communis	pycom04g20010 pycom12g22280
rosa_chinensis	RchiOBHm_Chr3g0450511
rosa_laevigata	RLG00000025725
rosa_multiflora	Rmu_co8302985.1_g000001 Rmu_sc0000078.1_g000051
rosa_roxburghii	Rroxscaffold_6G00428190
rosa_rugosa	Rorug02G0628200 Rorug02G0628300 Rorug02G0628400
rosa_samantha	Rh3AG029000 Rh3BG029500 Rh3CG028300 Rh3DG029200
rosa_wichuraiana	Rw3G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	574
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccII	CGCG	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	824
AciI	CCGC	1 cut(s)	254
AclI	AACGTT	1 cut(s)	383
AclWI	GGATC	2 cut(s)	172, 631
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	2 cut(s)	643, 719
AfeI	AGCGCT	2 cut(s)	55, 453
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	8 cut(s)	51, 110, 228, 458, 479, 514, 541, 832
AjiI	CACGTC	1 cut(s)	617
Alw21I	GWGCWC	4 cut(s)	187, 379, 397, 597
Alw26I	GTCTC	3 cut(s)	86, 141, 712
AlwI	GGATC	2 cut(s)	172, 631
Ama87I	CYCGRG	2 cut(s)	275, 434
Aor13HI	TCCGGA	1 cut(s)	824
Aor51HI	AGCGCT	2 cut(s)	55, 453
ApeKI	GCWGC	4 cut(s)	83, 232, 506, 782
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	3 cut(s)	56, 454, 787
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	186, 268
AvaI	CYCGRG	2 cut(s)	275, 434
AvaII	GGWCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	187, 597
BauI	CACGAG	1 cut(s)	798
BbsI	GAAGAC	2 cut(s)	672, 707
Bbv12I	GWGCWC	4 cut(s)	187, 379, 397, 597
BbvI	GCAGC	4 cut(s)	70, 244, 518, 769
BccI	CCATC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	657, 691
BclI	TGATCA	1 cut(s)	757
BcoDI	GTCTC	3 cut(s)	86, 141, 712
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	2 cut(s)	57, 455
BisI	GCNGC	4 cut(s)	84, 233, 507, 783
BlsI	GCNGC	4 cut(s)	85, 234, 508, 784
Bme18I	GGWCC	1 cut(s)	31
BmeT110I	CYCGRG	2 cut(s)	275, 434
BmgBI	CACGTC	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	576, 719
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	672, 707
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	518, 581
BsaWI	WCCGGW	2 cut(s)	714, 824
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	736, 836
Bse3DI	GCAATG	2 cut(s)	266, 315
BseAI	TCCGGA	1 cut(s)	824
BseGI	GGATG	3 cut(s)	244, 351, 499
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	2 cut(s)	266, 315
BseMII	CTCAG	7 cut(s)	135, 162, 200, 396, 453, 582, 864
BseNI	ACTGG	2 cut(s)	736, 836
BseRI	GAGGAG	4 cut(s)	104, 143, 234, 452
BseXI	GCAGC	4 cut(s)	70, 244, 518, 769
Bsh1236I	CGCG	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	4 cut(s)	187, 379, 397, 597
BsiHKCI	CYCGRG	2 cut(s)	275, 434
BsiSI	CCGG	2 cut(s)	715, 825
BslFI	GGGAC	2 cut(s)	539, 603
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	86, 141, 712
BsmFI	GGGAC	2 cut(s)	539, 603
BsmI	GAATGC	2 cut(s)	125, 154
BsoBI	CYCGRG	2 cut(s)	275, 434
Bsp1286I	GDGCHC	4 cut(s)	187, 379, 397, 597
Bsp13I	TCCGGA	1 cut(s)	824
Bsp143I	GATC	4 cut(s)	164, 636, 757, 806
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	7 cut(s)	136, 163, 199, 397, 454, 583, 863
BspEI	TCCGGA	1 cut(s)	824
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	576, 719
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	2 cut(s)	172, 631
BspT107I	GGYRCC	1 cut(s)	574
BsrDI	GCAATG	2 cut(s)	266, 315
BsrI	ACTGG	2 cut(s)	736, 836
BssMI	GATC	4 cut(s)	164, 636, 757, 806
BssSI	CACGAG	1 cut(s)	798
Bst2BI	CACGAG	1 cut(s)	798
Bst4CI	ACNGT	2 cut(s)	706, 739
Bst6I	CTCTTC	2 cut(s)	252, 684
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstDEI	CTNAG	9 cut(s)	75, 144, 171, 186, 405, 462, 521, 591, 850
BstF5I	GGATG	3 cut(s)	244, 351, 499
BstFNI	CGCG	1 cut(s)	254
BstH2I	RGCGCY	2 cut(s)	57, 455
BstHHI	GCGC	3 cut(s)	56, 454, 787
BstKTI	GATC	4 cut(s)	167, 639, 760, 809
BstMAI	GTCTC	3 cut(s)	86, 141, 712
BstMBI	GATC	4 cut(s)	164, 636, 757, 806
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 458, 581, 601
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	70, 244, 518, 769
BstV2I	GAAGAC	2 cut(s)	672, 707
BstX2I	RGATCY	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	617
BtsCI	GGATG	3 cut(s)	244, 351, 499
BtsIMutI	CAGTG	2 cut(s)	729, 843
CfoI	GCGC	3 cut(s)	56, 454, 787
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	674
CviAII	CATG	2 cut(s)	65, 340
DdeI	CTNAG	9 cut(s)	75, 144, 171, 186, 405, 462, 521, 591, 850
DpnI	GATC	4 cut(s)	166, 638, 759, 808
DpnII	GATC	4 cut(s)	164, 636, 757, 806
Eam1104I	CTCTTC	2 cut(s)	252, 684
EarI	CTCTTC	2 cut(s)	252, 684
Ecl136II	GAGCTC	2 cut(s)	185, 595
Eco24I	GRGCYC	2 cut(s)	187, 597
Eco47I	GGWCC	1 cut(s)	31
Eco47III	AGCGCT	2 cut(s)	55, 453
Eco53kI	GAGCTC	2 cut(s)	185, 595
Eco57I	CTGAAG	2 cut(s)	643, 719
Eco88I	CYCGRG	2 cut(s)	275, 434
EcoICRI	GAGCTC	2 cut(s)	185, 595
EcoT38I	GRGCYC	2 cut(s)	187, 597
FaeI	CATG	2 cut(s)	68, 343
FaiI	YATR	5 cut(s)	29, 66, 291, 341, 369
FaqI	GGGAC	2 cut(s)	539, 603
FatI	CATG	2 cut(s)	64, 339
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	4 cut(s)	84, 233, 507, 783
FokI	GGATG	3 cut(s)	251, 358, 506
FriOI	GRGCYC	2 cut(s)	187, 597
Fsp4HI	GCNGC	4 cut(s)	84, 233, 507, 783
FspBI	CTAG	1 cut(s)	57
FspI	TGCGCA	1 cut(s)	786
GlaI	GCGC	3 cut(s)	55, 453, 786
GluI	GCNGC	4 cut(s)	84, 233, 507, 783
HaeII	RGCGCY	2 cut(s)	57, 455
HapII	CCGG	2 cut(s)	715, 825
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	3 cut(s)	56, 454, 787
Hin1II	CATG	2 cut(s)	68, 343
Hin6I	GCGC	3 cut(s)	54, 452, 785
HinP1I	GCGC	3 cut(s)	54, 452, 785
HindIII	AAGCTT	3 cut(s)	602, 655, 858
HinfI	GANTC	3 cut(s)	529, 694, 845
HpaII	CCGG	2 cut(s)	715, 825
HphI	GGTGA	2 cut(s)	186, 268
Hpy166II	GTNNAC	1 cut(s)	841
Hpy188I	TCNGA	7 cut(s)	145, 189, 648, 699, 744, 806, 853
Hpy188III	TCNNGA	3 cut(s)	357, 598, 825
Hpy8I	GTNNAC	1 cut(s)	841
Hpy99I	CGWCG	2 cut(s)	47, 668
HpyCH4III	ACNGT	2 cut(s)	706, 739
HpyCH4IV	ACGT	4 cut(s)	45, 383, 400, 616
HpyCH4V	TGCA	5 cut(s)	86, 123, 152, 271, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 458, 581, 601
HpyF3I	CTNAG	9 cut(s)	75, 144, 171, 186, 405, 462, 521, 591, 850
HpySE526I	ACGT	4 cut(s)	45, 383, 400, 616
Hsp92II	CATG	2 cut(s)	68, 343
HspAI	GCGC	3 cut(s)	54, 452, 785
Kpn2I	TCCGGA	1 cut(s)	824
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	4 cut(s)	164, 636, 757, 806
LmnI	GCTCC	5 cut(s)	76, 182, 247, 317, 382
Lsp1109I	GCAGC	4 cut(s)	70, 244, 518, 769
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	4 cut(s)	45, 383, 400, 616
MalI	GATC	4 cut(s)	166, 638, 759, 808
MboI	GATC	4 cut(s)	164, 636, 757, 806
MboII	GAAGA	7 cut(s)	18, 239, 314, 315, 672, 701, 712
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	4 cut(s)	187, 379, 397, 597
MluCI	AATT	2 cut(s)	104, 307
MlyI	GAGTC	1 cut(s)	854
MmeI	TCCRAC	3 cut(s)	142, 160, 404
MroI	TCCGGA	1 cut(s)	824
MroXI	GAANNNNTTC	1 cut(s)	693
MslI	CAYNNNNRTG	2 cut(s)	294, 344
MspI	CCGG	2 cut(s)	715, 825
Mva1269I	GAATGC	2 cut(s)	125, 154
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	401, 458, 581, 601
NdeII	GATC	4 cut(s)	164, 636, 757, 806
NlaIII	CATG	2 cut(s)	68, 343
NlaIV	GGNNCC	2 cut(s)	576, 719
NsbI	TGCGCA	1 cut(s)	786
PaeR7I	CTCGAG	1 cut(s)	434
PctI	GAATGC	2 cut(s)	125, 154
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	529, 694
PflFI	GACNNNGTC	1 cut(s)	668
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	85, 234, 508, 784
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
Psp124BI	GAGCTC	2 cut(s)	187, 597
Psp1406I	AACGTT	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	576, 719
PspPI	GGNCC	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	668
RseI	CAYNNNNRTG	2 cut(s)	294, 344
SacI	GAGCTC	2 cut(s)	187, 597
SatI	GCNGC	4 cut(s)	84, 233, 507, 783
Sau3AI	GATC	4 cut(s)	164, 636, 757, 806
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	854
SduI	GDGCHC	4 cut(s)	187, 379, 397, 597
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	2 cut(s)	294, 344
SmlI	CTYRAG	3 cut(s)	434, 533, 596
SmoI	CTYRAG	3 cut(s)	434, 533, 596
Sse9I	AATT	2 cut(s)	104, 307
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	2 cut(s)	187, 597
TaaI	ACNGT	2 cut(s)	706, 739
TaiI	ACGT	4 cut(s)	48, 386, 403, 619
TaqI	TCGA	1 cut(s)	435
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	104, 307
TfiI	GAWTC	2 cut(s)	529, 694
TscAI	CASTG	2 cut(s)	736, 843
TseI	GCWGC	4 cut(s)	83, 232, 506, 782
TspDTI	ATGAA	2 cut(s)	53, 510
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	736, 843
Tth111I	GACNNNGTC	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	104
XhoI	CTCGAG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.