Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005029

Physical Location & Seq

Genomic Coordinates Reverse (-)

21584961 .. 21586913

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTGCTGGCTGTTAAGAGTACAAATCTTGATGATGAGTCCAGAGTCTCCAAATACAGAGCCCCCCAAGAGTTCACAGCCAACTTCACCTCAGTCATCAGGAGAGGGTGCGGAACATGATACTAAGAAGCATGCTAATGAAGAAGATATTTGGTCTCTGACTTCCTCAACTGCTGCATCTAGAACACCTAAATTCAAGGTTACAGTTGGACAAGCTCCCACGTTTAGGATCTACGAACGTATAGAGAAAAGGAAAGAGTTCTACTCGAAGTTGGAGGAAAAGCATCAAGCTATGGAGGCAGAGAGAAGCCAGTGGGAAGCAAGGGCCAAGGAAGAGCAAGAAGCAGCCATCAAGGCACTGAGGAAGAGCATGGTCTTCAAAGCAAATCCAATACCTAGTTTCATTTACGAGCCCCCTCCTCCTAAGGCTGAACGCAAGAAGCTTCCACTCACTCGGCCCAAGTCACCAAAACTAAACAGTCTAAGCCGGAGGAAGAGCTATGGCGATGCAATCACCAACTCATCCGCAGAGGAAAAAAAGAAAGGCTGTTCTCGGGCACAACGTCACAGCCTTGGCACTCAGAAGGAAGAATCCACGCCTCCCAAAAGTAAGGCTCAGTCCGGAAGGCGAAACAGCCTTGGCGGTTGCAAGACCAAAGACCATTCGAAACACGGAAAGGAAACAACGGAAACATCTTCAAAGACCGCCGAGCACACATCGGATTCGAATGACGACGGACACAAAAACTTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

252

Amino Acids

28.19

Weight (kDa)

9.63

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04630 AT3G04630 AT3G04630 AT5G28646 AT5G28646 AT5G28646
fragaria_vesca	FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600
malus_domestica	MD04G1226800.v1.1 MD12G1243800.v1.1
prunus_persica	Prupe.6G345500_v2.0.a1 Prupe.6G345500_v2.0.a1
pyrus_communis	pycom04g20010 pycom12g22280
rosa_chinensis	RchiOBHm_Chr3g0450511
rosa_laevigata	RLG00000025725
rosa_multiflora	Rmu_co8302985.1_g000001 Rmu_sc0000078.1_g000051
rosa_roxburghii	Rroxscaffold_6G00428190
rosa_rugosa	Rorug02G0628200 Rorug02G0628300 Rorug02G0628400
rosa_samantha	Rh3AG029000 Rh3BG029500 Rh3CG028300 Rh3DG029200
rosa_wichuraiana	Rw3G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	4 cut(s)	110, 525, 642, 705
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	196, 379, 699
AluBI	AGCT	4 cut(s)	215, 290, 442, 498
AluI	AGCT	4 cut(s)	215, 290, 442, 498
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	2 cut(s)	51, 159
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	552
Aor13HI	TCCGGA	1 cut(s)	620
AoxI	GGCC	2 cut(s)	324, 455
ApeKI	GCWGC	2 cut(s)	173, 344
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	324, 456
AsuHPI	GGTGA	3 cut(s)	78, 456, 505
AsuII	TTCGAA	2 cut(s)	665, 725
AvaI	CYCGRG	1 cut(s)	552
AxyI	CCTNAGG	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	559
BanII	GRGCYC	2 cut(s)	63, 414
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	160, 356
BccI	CCATC	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	51, 159
BfaI	CTAG	2 cut(s)	180, 396
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	2 cut(s)	174, 345
BlsI	GCNGC	2 cut(s)	175, 346
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	2 cut(s)	324, 456
BmsI	GCATC	3 cut(s)	185, 292, 496
BpiI	GAAGAC	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
Bpu14I	TTCGAA	2 cut(s)	665, 725
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	327, 571, 637
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	310
Bse21I	CCTNAGG	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	620
BseDI	CCNNGG	3 cut(s)	327, 571, 637
BseGI	GGATG	1 cut(s)	521
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	4 cut(s)	104, 350, 593, 629
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	160, 356
BshFI	GGCC	2 cut(s)	326, 457
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	2 cut(s)	487, 621
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	51, 159
BsnI	GGCC	2 cut(s)	326, 457
Bso31I	GGTCTC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	552
Bsp119I	TTCGAA	2 cut(s)	665, 725
Bsp1286I	GDGCHC	4 cut(s)	63, 414, 559, 714
Bsp13I	TCCGGA	1 cut(s)	620
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	4 cut(s)	110, 525, 642, 705
BspANI	GGCC	2 cut(s)	326, 457
BspCNI	CTCAG	4 cut(s)	103, 351, 592, 628
BspEI	TCCGGA	1 cut(s)	620
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	3 cut(s)	327, 359, 488
BspT104I	TTCGAA	2 cut(s)	665, 725
BspTNI	GGTCTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	327, 571, 637
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	327, 571, 637
Bst4CI	ACNGT	2 cut(s)	205, 479
Bst6I	CTCTTC	3 cut(s)	327, 359, 488
BstBI	TTCGAA	2 cut(s)	665, 725
BstC8I	GCNNGC	2 cut(s)	8, 132
BstDEI	CTNAG	7 cut(s)	90, 123, 359, 423, 482, 579, 615
BstF5I	GGATG	1 cut(s)	521
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	2 cut(s)	51, 159
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 353
BstNSI	RCATGY	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	160, 356
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	326, 457
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	317, 356
Cac8I	GCNNGC	2 cut(s)	8, 132
Cfr13I	GGNCC	2 cut(s)	324, 456
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	3 cut(s)	116, 131, 370
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	7 cut(s)	90, 123, 359, 423, 482, 579, 615
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	3 cut(s)	327, 359, 488
EarI	CTCTTC	3 cut(s)	327, 359, 488
Eco130I	CCWWGG	3 cut(s)	327, 571, 637
Eco24I	GRGCYC	2 cut(s)	63, 414
Eco31I	GGTCTC	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	552
EcoT14I	CCWWGG	3 cut(s)	327, 571, 637
EcoT38I	GRGCYC	2 cut(s)	63, 414
ErhI	CCWWGG	3 cut(s)	327, 571, 637
FaeI	CATG	3 cut(s)	119, 134, 373
FaiI	YATR	6 cut(s)	117, 132, 242, 293, 371, 501
FatI	CATG	3 cut(s)	115, 130, 369
Fnu4HI	GCNGC	2 cut(s)	174, 345
FokI	GGATG	1 cut(s)	508
FriOI	GRGCYC	2 cut(s)	63, 414
Fsp4HI	GCNGC	2 cut(s)	174, 345
FspBI	CTAG	2 cut(s)	180, 396
GluI	GCNGC	2 cut(s)	174, 345
HaeIII	GGCC	2 cut(s)	326, 457
HapII	CCGG	2 cut(s)	487, 621
Hin1II	CATG	3 cut(s)	119, 134, 373
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	4 cut(s)	37, 44, 590, 722
HpaII	CCGG	2 cut(s)	487, 621
HphI	GGTGA	3 cut(s)	78, 456, 505
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	159, 582, 721
Hpy188III	TCNNGA	5 cut(s)	28, 41, 99, 180, 621
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	2 cut(s)	577, 618
HpyCH4III	ACNGT	2 cut(s)	205, 479
HpyCH4IV	ACGT	3 cut(s)	221, 238, 562
HpyCH4V	TGCA	3 cut(s)	176, 509, 648
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 353
HpyF3I	CTNAG	7 cut(s)	90, 123, 359, 423, 482, 579, 615
HpySE526I	ACGT	3 cut(s)	221, 238, 562
Hsp92II	CATG	3 cut(s)	119, 134, 373
Kpn2I	TCCGGA	1 cut(s)	620
Kzo9I	GATC	1 cut(s)	228
LguI	GCTCTTC	3 cut(s)	327, 359, 488
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	54, 84, 323, 500, 634
Lsp1109I	GCAGC	2 cut(s)	160, 356
LweI	GCATC	3 cut(s)	185, 292, 496
MaeI	CTAG	2 cut(s)	180, 396
MaeII	ACGT	3 cut(s)	221, 238, 562
MaeIII	GTNAC	3 cut(s)	199, 462, 563
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	8 cut(s)	152, 155, 344, 367, 376, 505, 599, 687
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	4 cut(s)	63, 414, 559, 714
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	2 cut(s)	46, 53
MmeI	TCCRAC	2 cut(s)	187, 252
MroI	TCCGGA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	14, 754
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	2 cut(s)	487, 621
MwoI	GCNNNNNNNGC	2 cut(s)	296, 353
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	3 cut(s)	119, 134, 373
NmeAIII	GCCGAG	2 cut(s)	433, 733
NmuCI	GTSAC	2 cut(s)	462, 563
NspI	RCATGY	1 cut(s)	134
NspV	TTCGAA	2 cut(s)	665, 725
PaeI	GCATGC	1 cut(s)	134
PciSI	GCTCTTC	3 cut(s)	327, 359, 488
PcsI	WCGNNNNNNNCGW	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	590, 722
PkrI	GCNGC	2 cut(s)	175, 346
PleI	GAGTC	2 cut(s)	45, 52
PpsI	GAGTC	2 cut(s)	45, 52
PspPI	GGNCC	2 cut(s)	324, 456
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	3 cut(s)	327, 359, 488
SaqAI	TTAA	2 cut(s)	14, 754
SatI	GCNGC	2 cut(s)	174, 345
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	2 cut(s)	324, 456
SchI	GAGTC	2 cut(s)	46, 53
SduI	GDGCHC	4 cut(s)	63, 414, 559, 714
SfaNI	GCATC	3 cut(s)	185, 292, 496
SfuI	TTCGAA	2 cut(s)	665, 725
SmiMI	CAYNNNNRTG	1 cut(s)	135
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	4 cut(s)	110, 525, 642, 705
SspMI	CTAG	2 cut(s)	180, 396
StyI	CCWWGG	3 cut(s)	327, 571, 637
TaaI	ACNGT	2 cut(s)	205, 479
TaiI	ACGT	3 cut(s)	224, 241, 565
TaqI	TCGA	3 cut(s)	266, 665, 725
TasI	AATT	1 cut(s)	191
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	590, 722
Tru1I	TTAA	2 cut(s)	14, 754
Tru9I	TTAA	2 cut(s)	14, 754
TscAI	CASTG	2 cut(s)	317, 363
TseFI	GTSAC	2 cut(s)	462, 563
TseI	GCWGC	2 cut(s)	173, 344
Tsp45I	GTSAC	2 cut(s)	462, 563
TspDTI	ATGAA	2 cut(s)	153, 391
TspGWI	ACGGA	3 cut(s)	687, 701, 750
TspRI	CASTG	2 cut(s)	317, 363
XapI	RAATTY	1 cut(s)	191
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	180, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.