Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005029

Physical Location & Seq

Genomic Coordinates Reverse (-)

29642131 .. 29646158

Gene Structure 4028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G345500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGGAGGGAAGTTACTGGTGTAAAGGTGGAGAAGGTGGAGAAGGTGGAGAAGGTGGAGAAGAAGATTAATGGTGTTGTAGTGTCTGCAAATGGTTTTTCTCATGGTAAAGTTCATGTTGCTCCCAAAATTTCAGAGGAAAGCATTGAATCAAAGGACTACAAGGTGAAGGACCGTATCAAAGAAAACAAAGTTGTTGGGGAATCTGTTGAGAATCAAGATGTGCTAGCTGTTAAGAGCACAAATCTTGATGATGACTTGACTGAAGGCAAAAATGAGAAGCTCGGAACCCAGAAGTCGAGTGACAATAAAAATTCAGGCTCACCTGCTTTAAAATCCGTCGCTTTGGGAAATGGGCATTCAAATAAGGCTGTTGGGGCTGAAACTGCCACTTCTGAAAATTCCAGCAATACAGAGTCTGCCGATGCTACTAAGAGTTCACAGTCTCCTACAGCTACTAAGAGTTCTCTGTCTCCTACAGCTACTAAGAGTCCACAGTCTCCTAATGCAGAGTCTCCTAAGAGTTCACAGCCAACTTCACCTCAGTCATCATCACGAAAAGGCTCGCAACCTGATAATAAGAAGCATGCTGATGAAGAAGATAATTTGTCTGTTACTTCCTCAACTGCTGCATCTGTGAGAACTCCTAAATTCAAGGTTACGGTTGGACAAGCTCCCTCGTTTAGATGCTATGAACGAGCAGAGAAAAGGAAGGAGTTCTACTCGAAGTTAGAGGAAAAGCACCAAGCTCTGGAGTCAGAGAGAAGCCAGTGGGAAGCCAGGGCCAAGGAAGAGCAAGAAGCAGCCATCAAGGCGCTGAGGAAGAGCATGGTGTTCAAAGCAAATCCAGTACCTAATTTCTATTATCAGGCGCCTCCTCCTAAGACTGAACCCAAGAAGCTTCCACTTACTCGGCCCAAATCACCAAAACTAAACAGTCTAAGCCGGAGAAAGAGCTGTGGTGATGCACTCAGCTCGTCTGTGGAGGAAAAAAGAAGAGTTTGTTCTCGGGAACAACGTCACAGCCTCGGTAGTCAGAAAGAAGAAAGCACTGCACCCACTATGAACAATAAGGCTCAGTCTGGTAGACGAAACAGCATGGGCAGTTCCAAGGCCAAAGACCAATTGAAACAGGAAAAGGAACCAACGGAAACATCTCCTAAGATCACTGATGGACTTGAAAGCTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

398

Amino Acids

43.33

Weight (kDa)

9.47

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04630 AT3G04630 AT3G04630 AT5G28646 AT5G28646 AT5G28646
fragaria_vesca	FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600
malus_domestica	MD04G1226800.v1.1 MD12G1243800.v1.1
prunus_persica	Prupe.6G345500_v2.0.a1 Prupe.6G345500_v2.0.a1
pyrus_communis	pycom04g20010 pycom12g22280
rosa_chinensis	RchiOBHm_Chr3g0450511
rosa_laevigata	RLG00000025725
rosa_multiflora	Rmu_co8302985.1_g000001 Rmu_sc0000078.1_g000051
rosa_roxburghii	Rroxscaffold_6G00428190
rosa_rugosa	Rorug02G0628200 Rorug02G0628300 Rorug02G0628400
rosa_samantha	Rh3AG029000 Rh3BG029500 Rh3CG028300 Rh3DG029200
rosa_wichuraiana	Rw3G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	871
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccI	GTMKAC	1 cut(s)	1087
AcsI	RAATTY	4 cut(s)	129, 313, 400, 650
AcuI	CTGAAG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	872
AfaI	GTAC	1 cut(s)	852
AfiI	CCNNNNNNNGG	1 cut(s)	751
AgsI	TTSAA	6 cut(s)	149, 363, 655, 838, 1129, 1181
AjnI	CCWGG	1 cut(s)	779
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	4 cut(s)	450, 477, 504, 519
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	1008
AoxI	GGCC	3 cut(s)	783, 914, 1113
ApeKI	GCWGC	2 cut(s)	629, 803
ApoI	RAATTY	4 cut(s)	129, 313, 400, 650
AseI	ATTAAT	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	716
AspLEI	GCGC	2 cut(s)	817, 874
AspS9I	GGNCC	3 cut(s)	172, 783, 915
AsuHPI	GGTGA	5 cut(s)	178, 315, 531, 915, 974
AsuNHI	GCTAGC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	1008
AvaII	GGWCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	871
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
Bbv12I	GWGCWC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	818
BbvI	GCAGC	2 cut(s)	616, 815
BccI	CCATC	2 cut(s)	815, 1166
BcgI	CGANNNNNNTGC	2 cut(s)	957, 991
BciT130I	CCWGG	1 cut(s)	781
BcoDI	GTCTC	4 cut(s)	450, 477, 504, 519
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	450, 477
BfoI	RGCGCY	2 cut(s)	818, 875
BfuAI	ACCTGC	1 cut(s)	334
BglI	GCCNNNNNGGC	1 cut(s)	812
BisI	GCNGC	2 cut(s)	630, 804
BlsI	GCNGC	2 cut(s)	631, 805
Bme1390I	CCNGG	1 cut(s)	781
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	1008
BmgT120I	GGNCC	3 cut(s)	172, 783, 915
BmiI	GGNNCC	3 cut(s)	289, 873, 1143
BmrFI	CCNGG	1 cut(s)	781
BmsI	GCATC	4 cut(s)	415, 641, 677, 955
BmtI	GCTAGC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	707, 739
BpmI	CTGGAG	1 cut(s)	773
Bpu10I	CCTNAGC	1 cut(s)	818
BsaHI	GRCGYC	1 cut(s)	872
BsaJI	CCNNGG	4 cut(s)	780, 786, 1027, 1110
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse1I	ACTGG	3 cut(s)	22, 769, 848
BseBI	CCWGG	1 cut(s)	781
BseDI	CCNNGG	4 cut(s)	780, 786, 1027, 1110
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMII	CTCAG	4 cut(s)	557, 809, 985, 1091
BseNI	ACTGG	3 cut(s)	22, 769, 848
BseRI	GAGGAG	1 cut(s)	867
BseXI	GCAGC	2 cut(s)	616, 815
BsgI	GTGCAG	1 cut(s)	1038
BshFI	GGCC	3 cut(s)	785, 916, 1115
BshNI	GGYRCC	1 cut(s)	871
BsiHKAI	GWGCWC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	1008
BsiSI	CCGG	1 cut(s)	946
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmAI	GTCTC	4 cut(s)	450, 477, 504, 519
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	3 cut(s)	785, 916, 1115
BsoBI	CYCGRG	1 cut(s)	1008
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	1164
BspANI	GGCC	3 cut(s)	785, 916, 1115
BspCNI	CTCAG	4 cut(s)	556, 810, 984, 1090
BspLI	GGNNCC	3 cut(s)	289, 873, 1143
BspMI	ACCTGC	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	230
BspQI	GCTCTTC	2 cut(s)	786, 818
BspT107I	GGYRCC	1 cut(s)	871
BsrI	ACTGG	3 cut(s)	22, 769, 848
BssECI	CCNNGG	4 cut(s)	780, 786, 1027, 1110
BssMI	GATC	1 cut(s)	1164
BssNI	GRCGYC	1 cut(s)	872
BssT1I	CCWWGG	2 cut(s)	786, 1110
Bst2UI	CCWGG	1 cut(s)	781
Bst4CI	ACNGT	5 cut(s)	176, 444, 498, 664, 938
Bst6I	CTCTTC	3 cut(s)	786, 818, 991
BstACI	GRCGYC	1 cut(s)	872
BstC8I	GCNNGC	3 cut(s)	228, 566, 588
BstH2I	RGCGCY	2 cut(s)	818, 875
BstHHI	GCGC	2 cut(s)	817, 874
BstKTI	GATC	1 cut(s)	1167
BstMAI	GTCTC	4 cut(s)	450, 477, 504, 519
BstMBI	GATC	1 cut(s)	1164
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 386, 812
BstNI	CCWGG	1 cut(s)	781
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	779
BstSFI	CTRYAG	2 cut(s)	450, 477
BstV1I	GCAGC	2 cut(s)	616, 815
BsuRI	GGCC	3 cut(s)	785, 916, 1115
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	3 cut(s)	776, 1050, 1167
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	3 cut(s)	228, 566, 588
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	2 cut(s)	817, 874
Cfr13I	GGNCC	3 cut(s)	172, 783, 915
Csp6I	GTAC	1 cut(s)	851
CviAII	CATG	5 cut(s)	104, 116, 587, 829, 1099
CviQI	GTAC	1 cut(s)	851
DinI	GGCGCC	1 cut(s)	873
DpnI	GATC	1 cut(s)	1166
DpnII	GATC	1 cut(s)	1164
DraI	TTTAAA	1 cut(s)	333
Eam1104I	CTCTTC	3 cut(s)	786, 818, 991
EarI	CTCTTC	3 cut(s)	786, 818, 991
Eco130I	CCWWGG	2 cut(s)	786, 1110
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	1008
EcoRII	CCWGG	1 cut(s)	779
EcoT14I	CCWWGG	2 cut(s)	786, 1110
EgeI	GGCGCC	1 cut(s)	873
EheI	GGCGCC	1 cut(s)	873
ErhI	CCWWGG	2 cut(s)	786, 1110
FaeI	CATG	5 cut(s)	107, 119, 590, 832, 1102
FaiI	YATR	7 cut(s)	105, 117, 588, 693, 830, 1064, 1100
FatI	CATG	5 cut(s)	103, 115, 586, 828, 1098
FblI	GTMKAC	1 cut(s)	1087
Fnu4HI	GCNGC	2 cut(s)	630, 804
Fsp4HI	GCNGC	2 cut(s)	630, 804
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	2 cut(s)	816, 873
GluI	GCNGC	2 cut(s)	630, 804
GsuI	CTGGAG	1 cut(s)	773
HaeII	RGCGCY	2 cut(s)	818, 875
HaeIII	GGCC	3 cut(s)	785, 916, 1115
HapII	CCGG	1 cut(s)	946
HhaI	GCGC	2 cut(s)	817, 874
Hin1I	GRCGYC	1 cut(s)	872
Hin1II	CATG	5 cut(s)	107, 119, 590, 832, 1102
Hin6I	GCGC	2 cut(s)	815, 872
HinP1I	GCGC	2 cut(s)	815, 872
HindIII	AAGCTT	2 cut(s)	899, 1183
HinfI	GANTC	7 cut(s)	149, 203, 214, 416, 490, 512, 755
HpaII	CCGG	1 cut(s)	946
HphI	GGTGA	5 cut(s)	178, 315, 531, 915, 974
Hpy166II	GTNNAC	4 cut(s)	440, 494, 527, 1088
Hpy188I	TCNGA	5 cut(s)	136, 287, 397, 760, 1038
Hpy188III	TCNNGA	5 cut(s)	218, 248, 555, 752, 1010
Hpy8I	GTNNAC	4 cut(s)	440, 494, 527, 1088
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	6 cut(s)	28, 37, 46, 163, 260, 706
HpyCH4III	ACNGT	5 cut(s)	176, 444, 498, 664, 938
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	5 cut(s)	89, 509, 632, 968, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 386, 812
HpySE526I	ACGT	1 cut(s)	1018
Hsp92I	GRCGYC	1 cut(s)	872
Hsp92II	CATG	5 cut(s)	107, 119, 590, 832, 1102
HspAI	GCGC	2 cut(s)	815, 872
KasI	GGCGCC	1 cut(s)	871
Kzo9I	GATC	1 cut(s)	1164
LguI	GCTCTTC	2 cut(s)	786, 818
LmnI	GCTCC	2 cut(s)	127, 679
Lsp1109I	GCAGC	2 cut(s)	616, 815
LweI	GCATC	4 cut(s)	415, 641, 677, 955
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	5 cut(s)	13, 302, 613, 658, 1019
MalI	GATC	1 cut(s)	1166
MboI	GATC	1 cut(s)	1164
MboII	GAAGA	8 cut(s)	73, 76, 608, 611, 803, 835, 1008, 1055
MfeI	CAATTG	1 cut(s)	1124
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	7 cut(s)	129, 313, 400, 604, 650, 856, 1124
Mly113I	GGCGCC	1 cut(s)	872
MlyI	GAGTC	4 cut(s)	425, 499, 521, 764
MmeI	TCCRAC	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	3 cut(s)	69, 234, 332
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	1 cut(s)	946
MspR9I	CCNGG	1 cut(s)	781
MunI	CAATTG	1 cut(s)	1124
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	781
MwoI	GCNNNNNNNGC	3 cut(s)	377, 386, 812
NarI	GGCGCC	1 cut(s)	872
NdeII	GATC	1 cut(s)	1164
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	5 cut(s)	107, 119, 590, 832, 1102
NlaIV	GGNNCC	3 cut(s)	289, 873, 1143
NmeAIII	GCCGAG	1 cut(s)	892
NmuCI	GTSAC	2 cut(s)	302, 1019
NspI	RCATGY	1 cut(s)	590
PaeI	GCATGC	1 cut(s)	590
PaqCI	CACCTGC	1 cut(s)	334
PciSI	GCTCTTC	2 cut(s)	786, 818
PcsI	WCGNNNNNNNCGW	1 cut(s)	1015
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	3 cut(s)	149, 203, 214
PflMI	CCANNNNNTGG	1 cut(s)	751
PkrI	GCNGC	2 cut(s)	631, 805
PleI	GAGTC	4 cut(s)	424, 498, 520, 763
PluTI	GGCGCC	1 cut(s)	875
PpsI	GAGTC	4 cut(s)	424, 498, 520, 763
PshBI	ATTAAT	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	779
PspN4I	GGNNCC	3 cut(s)	289, 873, 1143
PspPI	GGNCC	3 cut(s)	172, 783, 915
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	852
RsaNI	GTAC	1 cut(s)	851
RseI	CAYNNNNRTG	1 cut(s)	591
SapI	GCTCTTC	2 cut(s)	786, 818
SaqAI	TTAA	3 cut(s)	69, 234, 332
SatI	GCNGC	2 cut(s)	630, 804
Sau3AI	GATC	1 cut(s)	1164
Sau96I	GGNCC	3 cut(s)	172, 783, 915
SchI	GAGTC	4 cut(s)	425, 499, 521, 764
ScrFI	CCNGG	1 cut(s)	781
SduI	GDGCHC	1 cut(s)	242
SfaNI	GCATC	4 cut(s)	415, 641, 677, 955
SfcI	CTRYAG	2 cut(s)	450, 477
SfoI	GGCGCC	1 cut(s)	873
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	591
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	7 cut(s)	129, 313, 400, 604, 650, 856, 1124
SspDI	GGCGCC	1 cut(s)	871
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	779
StyI	CCWWGG	2 cut(s)	786, 1110
TaaI	ACNGT	5 cut(s)	176, 444, 498, 664, 938
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	2 cut(s)	299, 725
TasI	AATT	7 cut(s)	129, 313, 400, 604, 650, 856, 1124
TfiI	GAWTC	3 cut(s)	149, 203, 214
Tru1I	TTAA	3 cut(s)	69, 234, 332
Tru9I	TTAA	3 cut(s)	69, 234, 332
TscAI	CASTG	3 cut(s)	776, 1057, 1174
TseFI	GTSAC	2 cut(s)	302, 1019
TseI	GCWGC	2 cut(s)	629, 803
Tsp45I	GTSAC	2 cut(s)	302, 1019
TspDTI	ATGAA	4 cut(s)	104, 609, 708, 1079
TspGWI	ACGGA	2 cut(s)	328, 1163
TspRI	CASTG	3 cut(s)	776, 1057, 1174
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	172
VspI	ATTAAT	1 cut(s)	69
XapI	RAATTY	4 cut(s)	129, 313, 400, 650
XceI	RCATGY	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	1087
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.