Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005029

Physical Location & Seq

Genomic Coordinates Forward (+)

1951346 .. 1956346

Gene Structure 5001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG028300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGCTTAGAAATGAAAAAAGAGCCCTTTTTGTGTTCATGGGTTTTGCTCGCATCTGGTTTGATTAATCAAGTTTCTGACTTTCCTCTTAAATTTTTCCTGCAAATTGAACCATCCTCCATGCCTATTGAGTTCCGGGACCTCAAGCTTTTATGTGACATGGGGAGGGAAATTACTGGTATGAAGGAAGAGAAGAAAATTAATGGTGTTGTAGTGGGTGCCAATGGTTTTTCTACTGCTAAACTCCATGTCTCTCCCAAAATTTCCGAGAGAATCAGTAGGATCGAGTCCAAGGAGTACAAGGTGAAGGACTCTAATGAAGAGAAAGCAGCTGAGGGGGAAGGTCTTGAGAAGCAAGATATGCTGGCTGTTAAGAGCACGAATCTTGATGATGACTTGACCAAGGAGAATAATGAGAAACCTGAAACTCAGAAGTCAAGCGAGAGTTTAAATTCCAGCTCACCAGTTTCAAAATCTGCTGCTGTTGAAAATGGGCACTCAAATCAGACTCTTCCTCATCCCAATGCTCTGGTAACTGAAAGGGCTGGTACATGTGAAGAGACTGCTGGGGCTGAAGTTGCCACTTCAGAAAACTCCAGCACTGCAGAGTCTCCTAATGCAACTAAGACTTCACAGACTGCCAATGCAGAGTCACCTACTAAGAGTTCAGAGCCAAATTCACCTCGGTCATCACGACCTGATACTAAGAAGCATGCTGGGGAAGAAGATAATTGGTCTCTTACTTCCTCAACTGCTGCATCTGTGAGAACAAATAAATTCAAGGTTACAGTTGGACAAGCTCCTTCGTTTAAATGCAGTGAACGCGCACAAAAAAGAAATGAGGTACTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

284

Amino Acids

30.91

Weight (kDa)

5.63

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04630 AT3G04630 AT3G04630 AT5G28646 AT5G28646 AT5G28646
fragaria_vesca	FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600
malus_domestica	MD04G1226800.v1.1 MD12G1243800.v1.1
prunus_persica	Prupe.6G345500_v2.0.a1 Prupe.6G345500_v2.0.a1
pyrus_communis	pycom04g20010 pycom12g22280
rosa_chinensis	RchiOBHm_Chr3g0450511
rosa_laevigata	RLG00000025725
rosa_multiflora	Rmu_co8302985.1_g000001 Rmu_sc0000078.1_g000051
rosa_roxburghii	Rroxscaffold_6G00428190
rosa_rugosa	Rorug02G0628200 Rorug02G0628300 Rorug02G0628400
rosa_samantha	Rh3AG029000 Rh3BG029500 Rh3CG028300 Rh3DG029200
rosa_wichuraiana	Rw3G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	1 cut(s)	825
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	5 cut(s)	92, 261, 451, 676, 776
AcuI	CTGAAG	2 cut(s)	570, 594
AfaI	GTAC	3 cut(s)	299, 550, 846
AflIII	ACRYGT	1 cut(s)	551
AgsI	TTSAA	4 cut(s)	110, 471, 488, 781
AluBI	AGCT	5 cut(s)	6, 148, 332, 459, 800
AluI	AGCT	5 cut(s)	6, 148, 332, 459, 800
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	4 cut(s)	256, 554, 615, 741
AlwI	GGATC	1 cut(s)	290
ApeKI	GCWGC	3 cut(s)	329, 479, 755
ApoI	RAATTY	5 cut(s)	92, 261, 451, 676, 776
AseI	ATTAAT	2 cut(s)	66, 201
AspLEI	GCGC	1 cut(s)	827
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	4 cut(s)	316, 453, 645, 672
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	341, 466, 742
BccI	CCATC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	4 cut(s)	256, 554, 615, 741
BfmI	CTRYAG	1 cut(s)	603
BisI	GCNGC	3 cut(s)	330, 480, 756
BlsI	GCNGC	3 cut(s)	331, 481, 757
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	140, 220
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	62, 767
BpmI	CTGGAG	1 cut(s)	580
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	128, 368
BpuMI	CCSGG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	741
BsaJI	CCNNGG	3 cut(s)	291, 402, 683
Bse1I	ACTGG	2 cut(s)	181, 464
BseDI	CCNNGG	3 cut(s)	291, 402, 683
BseGI	GGATG	2 cut(s)	113, 517
BseMII	CTCAG	2 cut(s)	324, 443
BseNI	ACTGG	2 cut(s)	181, 464
BseSI	GKGCMC	1 cut(s)	498
BseXI	GCAGC	3 cut(s)	341, 466, 742
BseYI	CCCAGC	2 cut(s)	566, 716
Bsh1236I	CGCG	1 cut(s)	825
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	152
BsmAI	GTCTC	4 cut(s)	256, 554, 615, 741
BsmFI	GGGAC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	741
Bsp1286I	GDGCHC	3 cut(s)	27, 380, 498
Bsp143I	GATC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	325, 442
BspFNI	CGCG	1 cut(s)	825
BspLI	GGNNCC	2 cut(s)	140, 220
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	741
BsrI	ACTGG	2 cut(s)	181, 464
BssECI	CCNNGG	3 cut(s)	291, 402, 683
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	291, 402
Bst4CI	ACNGT	1 cut(s)	790
Bst6I	CTCTTC	4 cut(s)	183, 315, 516, 552
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	51, 366, 714
BstDEI	CTNAG	6 cut(s)	7, 333, 429, 624, 660, 705
BstF5I	GGATG	2 cut(s)	113, 517
BstFNI	CGCG	1 cut(s)	825
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	4 cut(s)	256, 554, 615, 741
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 578, 822
BstNSI	RCATGY	2 cut(s)	555, 716
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	1 cut(s)	498
BstUI	CGCG	1 cut(s)	825
BstV1I	GCAGC	3 cut(s)	341, 466, 742
BstXI	CCANNNNNNTGG	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	113, 517
BtsI	GCAGTG	2 cut(s)	600, 823
BtsIMutI	CAGTG	2 cut(s)	600, 823
Cac8I	GCNNGC	3 cut(s)	51, 366, 714
CfoI	GCGC	1 cut(s)	827
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	298, 549, 845
CviAII	CATG	6 cut(s)	39, 121, 160, 248, 552, 713
CviQI	GTAC	3 cut(s)	298, 549, 845
DdeI	CTNAG	6 cut(s)	7, 333, 429, 624, 660, 705
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DraI	TTTAAA	2 cut(s)	450, 811
Eam1104I	CTCTTC	4 cut(s)	183, 315, 516, 552
EarI	CTCTTC	4 cut(s)	183, 315, 516, 552
Eco130I	CCWWGG	2 cut(s)	291, 402
Eco24I	GRGCYC	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	570, 594
EcoO109I	RGGNCCY	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	291, 402
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	291, 402
FaeI	CATG	6 cut(s)	42, 124, 163, 251, 555, 716
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	6 cut(s)	38, 120, 159, 247, 551, 712
Fnu4HI	GCNGC	3 cut(s)	330, 480, 756
FokI	GGATG	2 cut(s)	100, 504
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	330, 480, 756
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	3 cut(s)	330, 480, 756
GsaI	CCCAGC	2 cut(s)	570, 720
GsuI	CTGGAG	1 cut(s)	580
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	1 cut(s)	827
Hin1II	CATG	6 cut(s)	42, 124, 163, 251, 555, 716
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	7 cut(s)	273, 287, 311, 382, 508, 608, 650
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	4 cut(s)	316, 453, 645, 672
Hpy166II	GTNNAC	1 cut(s)	821
Hpy188I	TCNGA	6 cut(s)	79, 268, 432, 507, 589, 670
Hpy188III	TCNNGA	3 cut(s)	347, 386, 693
Hpy8I	GTNNAC	1 cut(s)	821
HpyAV	CCTTC	4 cut(s)	178, 301, 335, 813
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4V	TGCA	6 cut(s)	103, 605, 620, 647, 758, 816
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 578, 822
HpyF3I	CTNAG	6 cut(s)	7, 333, 429, 624, 660, 705
Hsp92II	CATG	6 cut(s)	42, 124, 163, 251, 555, 716
HspAI	GCGC	1 cut(s)	825
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	805
Lsp1109I	GCAGC	3 cut(s)	341, 466, 742
LweI	GCATC	2 cut(s)	62, 767
MaeIII	GTNAC	4 cut(s)	155, 532, 651, 784
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	7 cut(s)	200, 205, 332, 503, 569, 734, 737
MhlI	GDGCHC	3 cut(s)	27, 380, 498
MluCI	AATT	9 cut(s)	92, 105, 171, 198, 261, 451, 676, 730, 776
MlyI	GAGTC	5 cut(s)	296, 305, 502, 617, 659
MmeI	TCCRAC	1 cut(s)	772
MnlI	CCTC	9 cut(s)	96, 127, 152, 159, 328, 525, 693, 757, 835
MseI	TTAA	6 cut(s)	66, 90, 201, 372, 449, 810
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	825
MwoI	GCNNNNNNNGC	3 cut(s)	361, 578, 822
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	6 cut(s)	42, 124, 163, 251, 555, 716
NlaIV	GGNNCC	2 cut(s)	140, 220
NmuCI	GTSAC	2 cut(s)	155, 651
NspI	RCATGY	2 cut(s)	555, 716
PaeI	GCATGC	1 cut(s)	716
PciI	ACATGT	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	691
PfeI	GAWTC	2 cut(s)	273, 382
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	331, 481, 757
PleI	GAGTC	5 cut(s)	295, 305, 502, 616, 658
PpsI	GAGTC	5 cut(s)	295, 305, 502, 616, 658
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	551
PshBI	ATTAAT	2 cut(s)	66, 201
Psp5II	RGGWCCY	1 cut(s)	139
PspFI	CCCAGC	2 cut(s)	566, 716
PspN4I	GGNNCC	2 cut(s)	140, 220
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	299, 550, 846
RsaNI	GTAC	3 cut(s)	298, 549, 845
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	6 cut(s)	66, 90, 201, 372, 449, 810
SatI	GCNGC	3 cut(s)	330, 480, 756
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	5 cut(s)	296, 305, 502, 617, 659
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	3 cut(s)	27, 380, 498
SfaNI	GCATC	2 cut(s)	62, 767
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	2 cut(s)	143, 347
SmoI	CTYRAG	2 cut(s)	143, 347
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	9 cut(s)	92, 105, 171, 198, 261, 451, 676, 730, 776
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	2 cut(s)	291, 402
TaaI	ACNGT	1 cut(s)	790
TaqI	TCGA	1 cut(s)	285
TaqII	GACCGA	1 cut(s)	675
TasI	AATT	9 cut(s)	92, 105, 171, 198, 261, 451, 676, 730, 776
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	273, 382
Tru1I	TTAA	6 cut(s)	66, 90, 201, 372, 449, 810
Tru9I	TTAA	6 cut(s)	66, 90, 201, 372, 449, 810
TscAI	CASTG	2 cut(s)	607, 823
TseFI	GTSAC	2 cut(s)	155, 651
TseI	GCWGC	3 cut(s)	329, 479, 755
Tsp45I	GTSAC	2 cut(s)	155, 651
TspDTI	ATGAA	4 cut(s)	27, 29, 197, 333
TspRI	CASTG	2 cut(s)	607, 823
VpaK11BI	GGWCC	1 cut(s)	139
VspI	ATTAAT	2 cut(s)	66, 201
XapI	RAATTY	5 cut(s)	92, 261, 451, 676, 776
XceI	RCATGY	2 cut(s)	555, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.