Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005029

Physical Location & Seq

Genomic Coordinates Reverse (-)

31438870 .. 31442718

Gene Structure 3849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1243800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGAAGAAGGTGGTGGAGAAGAAGATTAACAGTGTCGTGGTGACTTCAATTGGTTTTACTCGTGGTAAGGTCCGCGTTGCTCCCAAAGTTTCAGAAGAAAGCATTGAGTCAAAGGATTCCAAGGTGAAGGACCCTGTCGGAGAAAACGAAGTAGCTGTGGAATCTGAGGAGACGCAAGATGTGCTGGCTGTTAAGAGTACAAATCCTGTTCAAAGTCCAGAGTCTCCAAATGCAGCGTCTCTGAAGAGTTCACAGCCAACTTCTCAGTCGTCACAAGAGGGCGCGGAACATGATAATAAGAAGCATGCTAATGAAGAAGATAATTGGTCTATGACTTCCTCAACTGCTGCATCAAGAACACCTAATTTCAAGGTTACGGTTGGACAAGCTCCCACGTTTAGGATCTATGAGCGTATAGAGAAAAGGAAGGAGTACTACTCAAAGTTAGAGGAAAAGCACCAAGCTATGGAGGCAGAGAGAAGCCAGTGGGAAGCAAGAGCCAAGGAAGAGCAAGAAGCAGCCATCAAGGTGCTGAGGAAGAGCATGGTGGTCAAAGCAAATCCGGTACCCAGTTTCATTTACGAGCCCCCTCCTCCTAAGACCGAACGCAAGAAGGCTCCACTCACTCAGCCCAAGTCACCAAAATTTAACAGTCTAAGCCGGAGGAAGAGCTATGGTGATGCAATCACCAACTCATCCGCGGAGGAAAAAAAGAAGGGCTGTTCTCGGCCACAACGTCACAGCCTTGGTACTCAGAAAGAAACTTCCCCCGCGGCTCCCAGATGTAAGGCTCAGTCTGGAAGGCGAAACAGCCTTGGCAGTTGCAAGACCAAAGACCATCCAAAACACGAAAAGGAAACAACCGAAACATCTCCAAAGACCGCGGAGCAGACATCAGAGTCGAACCACGATGGACTTGAAAGCTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

312

Amino Acids

34.61

Weight (kDa)

9.29

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	133 - 209	1.9e-22	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04630 AT3G04630 AT3G04630 AT5G28646 AT5G28646 AT5G28646
fragaria_vesca	FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600
malus_domestica	MD04G1226800.v1.1 MD12G1243800.v1.1
prunus_persica	Prupe.6G345500_v2.0.a1 Prupe.6G345500_v2.0.a1
pyrus_communis	pycom04g20010 pycom12g22280
rosa_chinensis	RchiOBHm_Chr3g0450511
rosa_laevigata	RLG00000025725
rosa_multiflora	Rmu_co8302985.1_g000001 Rmu_sc0000078.1_g000051
rosa_roxburghii	Rroxscaffold_6G00428190
rosa_rugosa	Rorug02G0628200 Rorug02G0628300 Rorug02G0628400
rosa_samantha	Rh3AG029000 Rh3BG029500 Rh3CG028300 Rh3DG029200
rosa_wichuraiana	Rw3G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	901
Acc65I	GGTACC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	568
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccII	CGCG	5 cut(s)	78, 287, 704, 776, 887
AciI	CCGC	8 cut(s)	76, 287, 702, 704, 774, 776, 885, 887
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	731
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	4 cut(s)	202, 437, 570, 754
AfiI	CCNNNNNNNGG	2 cut(s)	402, 469
AgsI	TTSAA	4 cut(s)	51, 215, 373, 923
AluBI	AGCT	5 cut(s)	158, 392, 467, 675, 927
AluI	AGCT	5 cut(s)	158, 392, 467, 675, 927
Alw26I	GTCTC	3 cut(s)	167, 231, 246
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	1 cut(s)	731
ApeKI	GCWGC	3 cut(s)	236, 350, 521
ApoI	RAATTY	1 cut(s)	647
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp718I	GGTACC	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	73, 133
AsuHPI	GGTGA	5 cut(s)	55, 139, 633, 682, 692
AvaII	GGWCC	2 cut(s)	73, 133
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	591
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
BauI	CACGAG	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	248, 337, 533
BccI	CCATC	3 cut(s)	533, 849, 908
BcoDI	GTCTC	3 cut(s)	167, 231, 246
BisI	GCNGC	4 cut(s)	237, 351, 522, 777
BlsI	GCNGC	4 cut(s)	238, 352, 523, 778
BmcAI	AGTACT	1 cut(s)	437
Bme18I	GGWCC	2 cut(s)	73, 133
BmgT120I	GGNCC	2 cut(s)	73, 133
BmiI	GGNNCC	4 cut(s)	135, 570, 621, 780
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	362, 673
BmuI	ACTGGG	1 cut(s)	567
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
Bpu10I	CCTNAGC	1 cut(s)	536
BsaJI	CCNNGG	7 cut(s)	123, 504, 702, 748, 774, 817, 885
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 469
Bse1I	ACTGG	2 cut(s)	487, 573
BseDI	CCNNGG	7 cut(s)	123, 504, 702, 748, 774, 817, 885
BseGI	GGATG	2 cut(s)	698, 841
BseLI	CCNNNNNNNGG	2 cut(s)	402, 469
BseMII	CTCAG	6 cut(s)	159, 281, 527, 644, 770, 809
BseNI	ACTGG	2 cut(s)	487, 573
BseRI	GAGGAG	2 cut(s)	185, 585
BseXI	GCAGC	3 cut(s)	248, 337, 533
Bsh1236I	CGCG	5 cut(s)	78, 287, 704, 776, 887
BshFI	GGCC	1 cut(s)	733
BshNI	GGYRCC	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	566, 664
BslI	CCNNNNNNNGG	2 cut(s)	402, 469
BsmAI	GTCTC	3 cut(s)	167, 231, 246
BsmBI	CGTCTC	2 cut(s)	167, 246
BsnI	GGCC	1 cut(s)	733
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	1 cut(s)	405
BspACI	CCGC	8 cut(s)	76, 287, 702, 704, 774, 776, 885, 887
BspANI	GGCC	1 cut(s)	733
BspCNI	CTCAG	6 cut(s)	160, 280, 528, 643, 769, 808
BspFNI	CGCG	5 cut(s)	78, 287, 704, 776, 887
BspLI	GGNNCC	4 cut(s)	135, 570, 621, 780
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	3 cut(s)	504, 536, 665
BspT107I	GGYRCC	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	487, 573
BssECI	CCNNGG	7 cut(s)	123, 504, 702, 748, 774, 817, 885
BssMI	GATC	1 cut(s)	405
BssSI	CACGAG	1 cut(s)	63
BssT1I	CCWWGG	4 cut(s)	123, 504, 748, 817
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	35, 382, 656
Bst6I	CTCTTC	4 cut(s)	242, 504, 536, 665
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	189, 309
BstDEI	CTNAG	8 cut(s)	168, 267, 536, 600, 630, 659, 756, 795
BstDSI	CCRYGG	3 cut(s)	702, 774, 885
BstF5I	GGATG	2 cut(s)	698, 841
BstFNI	CGCG	5 cut(s)	78, 287, 704, 776, 887
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	3 cut(s)	167, 231, 246
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 473
BstNSI	RCATGY	1 cut(s)	311
BstUI	CGCG	5 cut(s)	78, 287, 704, 776, 887
BstV1I	GCAGC	3 cut(s)	248, 337, 533
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	733
BtgI	CCRYGG	3 cut(s)	702, 774, 885
BtsCI	GGATG	2 cut(s)	698, 841
BtsIMutI	CAGTG	2 cut(s)	40, 494
Cac8I	GCNNGC	2 cut(s)	189, 309
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	73, 133
Cfr42I	CCGCGG	3 cut(s)	705, 777, 888
CseI	GACGC	2 cut(s)	184, 228
Csp6I	GTAC	4 cut(s)	201, 436, 569, 753
CviAII	CATG	3 cut(s)	293, 308, 547
CviQI	GTAC	4 cut(s)	201, 436, 569, 753
DdeI	CTNAG	8 cut(s)	168, 267, 536, 600, 630, 659, 756, 795
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
DrdI	GACNNNNNNGTC	1 cut(s)	901
DseDI	GACNNNNNNGTC	1 cut(s)	901
EaeI	YGGCCR	1 cut(s)	731
Eam1104I	CTCTTC	4 cut(s)	242, 504, 536, 665
EarI	CTCTTC	4 cut(s)	242, 504, 536, 665
Eco130I	CCWWGG	4 cut(s)	123, 504, 748, 817
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	2 cut(s)	73, 133
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	133
EcoT14I	CCWWGG	4 cut(s)	123, 504, 748, 817
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	4 cut(s)	123, 504, 748, 817
Esp3I	CGTCTC	2 cut(s)	167, 246
FaeI	CATG	3 cut(s)	296, 311, 550
FaiI	YATR	8 cut(s)	294, 309, 335, 411, 419, 470, 548, 678
FatI	CATG	3 cut(s)	292, 307, 546
FauI	CCCGC	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	237, 351, 522, 777
FokI	GGATG	2 cut(s)	685, 828
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	4 cut(s)	237, 351, 522, 777
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	4 cut(s)	237, 351, 522, 777
HaeIII	GGCC	1 cut(s)	733
HapII	CCGG	2 cut(s)	566, 664
HgaI	GACGC	2 cut(s)	184, 228
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	3 cut(s)	296, 311, 550
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	925
HinfI	GANTC	5 cut(s)	110, 119, 164, 224, 902
HpaII	CCGG	2 cut(s)	566, 664
HphI	GGTGA	5 cut(s)	55, 139, 633, 682, 692
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	6 cut(s)	97, 143, 169, 246, 759, 901
Hpy188III	TCNNGA	3 cut(s)	221, 357, 801
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	6 cut(s)	4, 124, 424, 610, 712, 798
HpyCH4III	ACNGT	3 cut(s)	35, 382, 656
HpyCH4IV	ACGT	2 cut(s)	398, 739
HpyCH4V	TGCA	4 cut(s)	236, 353, 686, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 473
HpyF3I	CTNAG	8 cut(s)	168, 267, 536, 600, 630, 659, 756, 795
HpySE526I	ACGT	2 cut(s)	398, 739
Hsp92II	CATG	3 cut(s)	296, 311, 550
HspAI	GCGC	1 cut(s)	285
KpnI	GGTACC	1 cut(s)	572
KspI	CCGCGG	3 cut(s)	705, 777, 888
Kzo9I	GATC	1 cut(s)	405
LguI	GCTCTTC	3 cut(s)	504, 536, 665
LmnI	GCTCC	5 cut(s)	88, 397, 625, 784, 889
Lsp1109I	GCAGC	3 cut(s)	248, 337, 533
LweI	GCATC	2 cut(s)	362, 673
MaeII	ACGT	2 cut(s)	398, 739
MaeIII	GTNAC	5 cut(s)	43, 273, 376, 639, 740
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	4 cut(s)	51, 325, 367, 647
MlyI	GAGTC	3 cut(s)	119, 233, 911
MmeI	TCCRAC	2 cut(s)	121, 364
MseI	TTAA	3 cut(s)	30, 195, 651
MslI	CAYNNNNRTG	2 cut(s)	312, 530
MspA1I	CMGCKG	3 cut(s)	704, 776, 887
MspI	CCGG	2 cut(s)	566, 664
MunI	CAATTG	1 cut(s)	51
MvnI	CGCG	5 cut(s)	78, 287, 704, 776, 887
MwoI	GCNNNNNNNGC	2 cut(s)	184, 473
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	3 cut(s)	296, 311, 550
NlaIV	GGNNCC	4 cut(s)	135, 570, 621, 780
NmeAIII	GCCGAG	1 cut(s)	709
NmuCI	GTSAC	4 cut(s)	43, 273, 639, 740
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PciSI	GCTCTTC	3 cut(s)	504, 536, 665
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 736
PfeI	GAWTC	2 cut(s)	119, 164
PflFI	GACNNNGTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	4 cut(s)	238, 352, 523, 778
PleI	GAGTC	3 cut(s)	118, 232, 910
PpsI	GAGTC	3 cut(s)	118, 232, 910
PpuMI	RGGWCCY	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	133
PspN4I	GGNNCC	4 cut(s)	135, 570, 621, 780
PspPI	GGNCC	2 cut(s)	73, 133
PspPPI	RGGWCCY	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	4 cut(s)	202, 437, 570, 754
RsaNI	GTAC	4 cut(s)	201, 436, 569, 753
RseI	CAYNNNNRTG	2 cut(s)	312, 530
SacII	CCGCGG	3 cut(s)	705, 777, 888
SapI	GCTCTTC	3 cut(s)	504, 536, 665
SaqAI	TTAA	3 cut(s)	30, 195, 651
SatI	GCNGC	4 cut(s)	237, 351, 522, 777
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	2 cut(s)	73, 133
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	3 cut(s)	119, 233, 911
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	2 cut(s)	362, 673
Sfr303I	CCGCGG	3 cut(s)	705, 777, 888
SgrBI	CCGCGG	3 cut(s)	705, 777, 888
SinI	GGWCC	2 cut(s)	73, 133
SmiMI	CAYNNNNRTG	2 cut(s)	312, 530
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	4 cut(s)	51, 325, 367, 647
SsiI	CCGC	8 cut(s)	76, 287, 702, 704, 774, 776, 885, 887
StyI	CCWWGG	4 cut(s)	123, 504, 748, 817
TaaI	ACNGT	3 cut(s)	35, 382, 656
TaiI	ACGT	2 cut(s)	401, 742
TaqI	TCGA	1 cut(s)	905
TaqII	GACCGA	1 cut(s)	620
TasI	AATT	4 cut(s)	51, 325, 367, 647
TatI	WGTACW	2 cut(s)	200, 435
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	2 cut(s)	119, 164
Tru1I	TTAA	3 cut(s)	30, 195, 651
Tru9I	TTAA	3 cut(s)	30, 195, 651
TscAI	CASTG	2 cut(s)	40, 494
TseFI	GTSAC	4 cut(s)	43, 273, 639, 740
TseI	GCWGC	3 cut(s)	236, 350, 521
Tsp45I	GTSAC	4 cut(s)	43, 273, 639, 740
TspDTI	ATGAA	2 cut(s)	330, 568
TspRI	CASTG	2 cut(s)	40, 494
Tth111I	GACNNNGTC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	2 cut(s)	73, 133
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.