Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005029

Physical Location & Seq

Genomic Coordinates Forward (+)

10674712 .. 10677234

Gene Structure 2523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28646.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGAAGAGAAGTTTTTGAGTCGGTGAGCACCAATGCTTCTAATGAAAGGGTTCACGTGGCTCCCAAAATAGCGGCAGAGGAACAAGATTATGAGGAGAAAGAATGCACTGAGGAGAATTCTCTCTCTCAGAATCATAAATCTTCTAATGTAATCACAGAGAATGATTCGAAGAAGAAGAATTTGGATGAAGAGGATGATTGTTCTGTTGCTTCTTCGATGAAGAATGCTAAGTCTAAAGTAACTCATGGAACCGCTCCACGATTTAGGAGTGCTCAGCGCGCTGAGAAACGAAAAGAGTATTACCAAAAGCTTGAAGAGAAACACCAAGCACTTGAAGCTGAAAGGATCGAGCTCGAACAAAGACAAAAGGAAGAACAAGAAGCAGCTATTAAACAGCTTCGGAAAAACCTTAAGTTTAAGGCTAATCCTGTTCCTGACTTCTATTACCAACGACCTCCCGTGAAACCAGAGCTTAAGAAGTTTCCTCTGACGCGTCCTAAGTCGCCGAAACTCAATCTGTCCAGGAGAAAGAGTTGCAGCGATGCGATTACCTCGTCTGGTGAAGAGAATTCGAACTCACAGAATCGCCAGAGTGTGGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0000904 GO:0001558 GO:0001578 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007163 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009825 GO:0009826 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010031 GO:0010090 GO:0010091 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0022622 GO:0030154 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048364 GO:0048468 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050879 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0097435 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

202

Amino Acids

23.34

Weight (kDa)

8.82

Isoelectric Point (pI)

66.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	84 - 153	2.1e-23	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04630 AT3G04630 AT3G04630 AT5G28646 AT5G28646 AT5G28646
fragaria_vesca	FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600
malus_domestica	MD04G1226800.v1.1 MD12G1243800.v1.1
prunus_persica	Prupe.6G345500_v2.0.a1 Prupe.6G345500_v2.0.a1
pyrus_communis	pycom04g20010 pycom12g22280
rosa_chinensis	RchiOBHm_Chr3g0450511
rosa_laevigata	RLG00000025725
rosa_multiflora	Rmu_co8302985.1_g000001 Rmu_sc0000078.1_g000051
rosa_roxburghii	Rroxscaffold_6G00428190
rosa_rugosa	Rorug02G0628200 Rorug02G0628300 Rorug02G0628400
rosa_samantha	Rh3AG029000 Rh3BG029500 Rh3CG028300 Rh3DG029200
rosa_wichuraiana	Rw3G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccBSI	CCGCTC	1 cut(s)	257
AccII	CGCG	2 cut(s)	282, 496
AciI	CCGC	2 cut(s)	74, 255
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	3 cut(s)	118, 181, 571
AcvI	CACGTG	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	598
AflII	CTTAAG	2 cut(s)	413, 476
AflIII	ACRYGT	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	317, 338
AjnI	CCWGG	1 cut(s)	524
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	6 cut(s)	313, 341, 355, 389, 400, 475
AluI	AGCT	6 cut(s)	313, 341, 355, 389, 400, 475
Alw21I	GWGCWC	3 cut(s)	32, 277, 357
AlwI	GGATC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	386, 540
ApoI	RAATTY	3 cut(s)	118, 181, 571
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	282, 284
AsuHPI	GGTGA	2 cut(s)	37, 575
AsuII	TTCGAA	2 cut(s)	170, 575
BanII	GRGCYC	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	58
Bbv12I	GWGCWC	3 cut(s)	32, 277, 357
BbvI	GCAGC	2 cut(s)	398, 552
BciT130I	CCWGG	1 cut(s)	526
BfrI	CTTAAG	2 cut(s)	413, 476
BisI	GCNGC	3 cut(s)	75, 387, 541
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	3 cut(s)	76, 388, 542
Bme1390I	CCNGG	1 cut(s)	526
BmiI	GGNNCC	2 cut(s)	63, 253
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	1 cut(s)	535
Bpu1102I	GCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	2 cut(s)	170, 575
BsaAI	YACGTR	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	193, 202
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	4 cut(s)	102, 143, 276, 290
BsePI	GCGCGC	1 cut(s)	280
BseRI	GAGGAG	2 cut(s)	110, 128
BseXI	GCAGC	2 cut(s)	398, 552
Bsh1236I	CGCG	2 cut(s)	282, 496
BsiHKAI	GWGCWC	3 cut(s)	32, 277, 357
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmI	GAATGC	2 cut(s)	110, 232
Bsp119I	TTCGAA	2 cut(s)	170, 575
Bsp1286I	GDGCHC	3 cut(s)	32, 277, 357
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	74, 255
BspCNI	CTCAG	4 cut(s)	103, 142, 277, 289
BspFNI	CGCG	2 cut(s)	282, 496
BspLI	GGNNCC	2 cut(s)	63, 253
BspPI	GGATC	1 cut(s)	356
BspT104I	TTCGAA	2 cut(s)	170, 575
BspTI	CTTAAG	2 cut(s)	413, 476
BsrBI	CCGCTC	1 cut(s)	257
BssHII	GCGCGC	1 cut(s)	280
BssMI	GATC	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	526
Bst6I	CTCTTC	3 cut(s)	186, 312, 561
BstAFI	CTTAAG	2 cut(s)	413, 476
BstBAI	YACGTR	1 cut(s)	58
BstBI	TTCGAA	2 cut(s)	170, 575
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	6 cut(s)	111, 129, 231, 276, 285, 501
BstF5I	GGATG	2 cut(s)	193, 202
BstFNI	CGCG	2 cut(s)	282, 496
BstHHI	GCGC	2 cut(s)	282, 284
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 338
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	524
BstUI	CGCG	2 cut(s)	282, 496
BstV1I	GCAGC	2 cut(s)	398, 552
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	193, 202
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	2 cut(s)	282, 284
CseI	GACGC	2 cut(s)	485, 502
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	8 cut(s)	62, 313, 341, 355, 389, 400, 425, 475
CviKI_1	RGCY	8 cut(s)	62, 313, 341, 355, 389, 400, 425, 475
DdeI	CTNAG	6 cut(s)	111, 129, 231, 276, 285, 501
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
Eam1104I	CTCTTC	3 cut(s)	186, 312, 561
EarI	CTCTTC	3 cut(s)	186, 312, 561
Ecl136II	GAGCTC	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
Eco72I	CACGTG	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	355
EcoRI	GAATTC	2 cut(s)	118, 571
EcoRII	CCWGG	1 cut(s)	524
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	93, 138, 249
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	75, 387, 541
FokI	GGATG	2 cut(s)	200, 209
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	75, 387, 541
GlaI	GCGC	2 cut(s)	281, 283
GluI	GCNGC	3 cut(s)	75, 387, 541
HgaI	GACGC	2 cut(s)	485, 502
HhaI	GCGC	2 cut(s)	282, 284
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	2 cut(s)	280, 282
HinP1I	GCGC	2 cut(s)	280, 282
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	4 cut(s)	20, 133, 167, 586
HphI	GGTGA	2 cut(s)	37, 575
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	132, 405, 492
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	108, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 338
HpyF3I	CTNAG	6 cut(s)	111, 129, 231, 276, 285, 501
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	2 cut(s)	280, 282
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	67, 262
LpnPI	CCDG	7 cut(s)	444, 450, 483, 511, 538, 546, 605
Lsp1109I	GCAGC	2 cut(s)	398, 552
LweI	GCATC	1 cut(s)	535
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	350
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	1 cut(s)	348
MhlI	GDGCHC	3 cut(s)	32, 277, 357
MluCI	AATT	3 cut(s)	118, 181, 571
MluI	ACGCGT	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	7 cut(s)	73, 88, 106, 187, 468, 498, 565
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	4 cut(s)	393, 414, 420, 477
MspCI	CTTAAG	2 cut(s)	413, 476
MspR9I	CCNGG	1 cut(s)	526
Mva1269I	GAATGC	2 cut(s)	110, 232
MvaI	CCWGG	1 cut(s)	526
MvnI	CGCG	2 cut(s)	282, 496
MwoI	GCNNNNNNNGC	2 cut(s)	281, 338
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	63, 253
NspV	TTCGAA	2 cut(s)	170, 575
PauI	GCGCGC	1 cut(s)	280
PctI	GAATGC	2 cut(s)	110, 232
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	133, 167, 586
PflMI	CCANNNNNTGG	1 cut(s)	598
PfoI	TCCNGGA	1 cut(s)	524
PkrI	GCNGC	3 cut(s)	76, 388, 542
PleI	GAGTC	1 cut(s)	28
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	524
PspCI	CACGTG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	63, 253
PteI	GCGCGC	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	393, 414, 420, 477
SatI	GCNGC	3 cut(s)	75, 387, 541
Sau3AI	GATC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	3 cut(s)	32, 277, 357
SfaNI	GCATC	1 cut(s)	535
SfuI	TTCGAA	2 cut(s)	170, 575
SmlI	CTYRAG	2 cut(s)	413, 476
SmoI	CTYRAG	2 cut(s)	413, 476
Sse9I	AATT	3 cut(s)	118, 181, 571
SsiI	CCGC	2 cut(s)	74, 255
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	524
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	5 cut(s)	170, 218, 351, 357, 575
TasI	AATT	3 cut(s)	118, 181, 571
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	3 cut(s)	133, 167, 586
Tru1I	TTAA	4 cut(s)	393, 414, 420, 477
Tru9I	TTAA	4 cut(s)	393, 414, 420, 477
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	386, 540
TspDTI	ATGAA	3 cut(s)	60, 204, 236
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	598
Vha464I	CTTAAG	2 cut(s)	413, 476
XapI	RAATTY	3 cut(s)	118, 181, 571
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.