Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8302985.1

Orthogroup ID

OG0005029

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 712

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8302985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

aagtccttggtgatcaaagcaaagccagtacctagtttctattatgagccacctcctcctaaggctgaactcaagaagcttccacttacgcggcccaagtcaccaaaactgaacagtctaagcaggagaaagagctttggtgatgctctcaacacatctcatgacgaaaagggaagagtttgtcctcgagcacatcgtcacagcgttggttgccagaaagaatgcactgcatcgactactccaaagaataaggtgcagaacagtagacgtaacagtcttggcaatggtagcaaagtcaaagaccaatcaaaacagggagaagaagaaacaacgaaaacagctcctaagttcacccagaagagaaacgtagacatcagtttgaatcatgaactcgaaagctttttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

135

Amino Acids

15.16

Weight (kDa)

10.05

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04630 AT3G04630 AT3G04630 AT5G28646 AT5G28646 AT5G28646
fragaria_vesca	FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600 FvH4_6g02600
malus_domestica	MD04G1226800.v1.1 MD12G1243800.v1.1
prunus_persica	Prupe.6G345500_v2.0.a1 Prupe.6G345500_v2.0.a1
pyrus_communis	pycom04g20010 pycom12g22280
rosa_chinensis	RchiOBHm_Chr3g0450511
rosa_laevigata	RLG00000025725
rosa_multiflora	Rmu_co8302985.1_g000001 Rmu_sc0000078.1_g000051
rosa_roxburghii	Rroxscaffold_6G00428190
rosa_rugosa	Rorug02G0628200 Rorug02G0628300 Rorug02G0628400
rosa_samantha	Rh3AG029000 Rh3BG029500 Rh3CG028300 Rh3DG029200
rosa_wichuraiana	Rw3G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	265, 369
AccII	CGCG	1 cut(s)	91
AciI	CCGC	1 cut(s)	91
AfaI	GTAC	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	382
AluBI	AGCT	4 cut(s)	79, 135, 341, 399
AluI	AGCT	4 cut(s)	79, 135, 341, 399
Alw21I	GWGCWC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	4 cut(s)	22, 93, 152, 343
AvaI	CYCGRG	1 cut(s)	186
AxyI	CCTNAGG	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	93
BmsI	GCATC	2 cut(s)	133, 239
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	26
Bse21I	CCTNAGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	6
BseMI	GCAATG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	91
BspHI	TCATGA	2 cut(s)	160, 385
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	116, 263, 275
Bst6I	CTCTTC	2 cut(s)	169, 353
BstDEI	CTNAG	3 cut(s)	60, 119, 345
BstFNI	CGCG	1 cut(s)	91
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 288
BstUI	CGCG	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
CciI	TCATGA	2 cut(s)	160, 385
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	161, 386
CviJI	RGCY	8 cut(s)	25, 49, 65, 79, 94, 135, 341, 399
CviKI_1	RGCY	8 cut(s)	25, 49, 65, 79, 94, 135, 341, 399
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	3 cut(s)	60, 119, 345
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	169, 353
EarI	CTCTTC	2 cut(s)	169, 353
Eco130I	CCWWGG	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	164, 389
FaiI	YATR	3 cut(s)	45, 162, 387
FatI	CATG	2 cut(s)	160, 385
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	2 cut(s)	265, 369
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	164, 389
HindIII	AAGCTT	2 cut(s)	77, 397
HinfI	GANTC	1 cut(s)	382
HphI	GGTGA	4 cut(s)	22, 93, 152, 343
Hpy166II	GTNNAC	3 cut(s)	266, 351, 370
Hpy188III	TCNNGA	3 cut(s)	73, 161, 386
Hpy8I	GTNNAC	3 cut(s)	266, 351, 370
HpyCH4III	ACNGT	3 cut(s)	116, 263, 275
HpyCH4IV	ACGT	2 cut(s)	268, 366
HpyCH4V	TGCA	3 cut(s)	225, 230, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 288
HpyF3I	CTNAG	3 cut(s)	60, 119, 345
HpySE526I	ACGT	2 cut(s)	268, 366
Hsp92II	CATG	2 cut(s)	164, 389
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	5 cut(s)	39, 109, 227, 299, 368
LweI	GCATC	2 cut(s)	133, 239
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	268, 366
MaeIII	GTNAC	3 cut(s)	99, 197, 269
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	4 cut(s)	186, 332, 335, 370
MhlI	GDGCHC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	63, 66, 195
Mva1269I	GAATGC	1 cut(s)	227
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	2 cut(s)	210, 288
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	164, 389
NmuCI	GTSAC	2 cut(s)	99, 197
PaeR7I	CTCGAG	1 cut(s)	186
PagI	TCATGA	2 cut(s)	160, 385
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	93
PspXI	VCTCGAGB	1 cut(s)	186
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	9 cut(s)	34, 55, 81, 137, 255, 271, 343, 369, 401
SfaNI	GCATC	2 cut(s)	133, 239
Sfr274I	CTCGAG	1 cut(s)	186
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	71, 186
SmoI	CTYRAG	2 cut(s)	71, 186
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	116, 263, 275
TaiI	ACGT	2 cut(s)	271, 369
TaqI	TCGA	3 cut(s)	187, 233, 393
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	382
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	99, 197
Tsp45I	GTSAC	2 cut(s)	99, 197
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	186
XmiI	GTMKAC	2 cut(s)	265, 369
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.