AT3G04760

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
1303419 .. 1305950
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04760.2

Sequence Viewer

Length: 1809 bp
ATGACTCCGTTATCCTCTGAACTCGTTGGTTTCACTATCCCTTTCTACTCCAAAACTCAGAAACCCTATTCAAATTCTTCTCACGGACTCCTACTATCTCACAATCGAAGCTCCCTCTTAACCTTCTCAAACTCTAACCCTAACAACGACAATGGTAGATCCTTTTCATCTTCAGGAGCAAGAAACCTTCAAACCACTACCACAACAGACGCAACACTCCCCACAGAACGAAGACAACAACATTCACAATCTCTCGGATTTAGAGATACACAGATGCTCAAAATCTTCCATCGATCATGCCGTTCAGGGAATTACATCGAATCTCTACACTTACTCGAGACCATGGTACGCAAAGGTTACAATCCTGATGTGATACTCTGCACTAAGCTCATTAAAGGGTTCTTCACTCTAAGAAACATCCCTAAAGCTGTTAGGGTTATGGAGATTCTCGAGAAATTCGGACAGCCTGATGTGTTTGCTTACAACGCTCTGATTAATGGGTTTTGTAAGATGAATCGAATCGATGATGCTACGAGAGTTCTTGATAGGATGAGAAGTAAAGATTTTTCACCAGATACCGTGACTTACAACATAATGATTGGTAGTTTGTGTAGTAGAGGTAAACTTGATCTTGCTTTGAAGGTTTTAAATCAGTTGTTAAGTGATAATTGCCAACCTACTGTCATTACTTACACGATTTTGATCGAAGCTACGATGCTCGAAGGCGGAGTTGATGAAGCGTTGAAGCTTATGGATGAGATGTTGTCTAGAGGGTTAAAACCTGATATGTTTACTTATAACACAATCATTAGAGGAATGTGTAAAGAAGGGATGGTGGACCGCGCGTTTGAGATGGTTCGGAATTTGGAATTGAAAGGTTGTGAGCCTGATGTGATCTCTTATAACATCTTGCTTCGTGCTCTTTTGAATCAAGGGAAATGGGAAGAAGGTGAGAAGCTAATGACTAAGATGTTTTCAGAGAAGTGTGATCCTAATGTTGTGACTTATAGCATTTTGATTACTACTCTATGTCGCGATGGAAAGATCGAAGAAGCGATGAATCTTCTTAAGCTTATGAAGGAAAAAGGGTTAACTCCTGATGCTTATAGCTATGATCCTTTGATAGCTGCGTTTTGTAGAGAAGGTAGGTTAGATGTTGCTATTGAGTTCTTGGAAACTATGATCTCTGACGGATGTTTACCGGACATAGTTAACTACAACACGGTTTTAGCTACGTTGTGTAAGAACGGGAAAGCAGACCAAGCGTTGGAGATTTTTGGGAAACTAGGAGAAGTTGGCTGCTCACCGAACTCTAGTTCTTACAACACGATGTTTAGCGCGTTATGGAGCAGTGGAGATAAAATCAGAGCGTTACATATGATATTAGAGATGATGAGTAACGGGATAGATCCTGATGAGATCACATATAACTCGATGATATCGTGTCTGTGCAGAGAAGGAATGGTAGATGAAGCTTTTGAGTTATTGGTTGATATGAGGAGCTGTGAGTTTCATCCATCGGTTGTTACATACAACATTGTTCTTTTGGGATTCTGCAAAGCTCATAGGATCGAGGACGCGATCAATGTTTTGGAATCAATGGTGGGAAATGGATGTAGGCCTAATGAAACTACTTATACTGTGCTCATTGAAGGGATTGGGTTTGCTGGATATAGAGCAGAAGCAATGGAGTTAGCAAATGATTTGGTTCGCATCGATGCCATTTCGGAGTACTCGTTCAAGAGGTTGCATAGGACTTTCCCTTTACTTAATGTTTTACAGAGATCTTCTCAGACATTTGGTTATTAA

Protein Analysis

602

Amino Acids

67.69

Weight (kDa)

5.76

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 111 - 166 2.6e-06 Pentatricopeptide repeat domain
TPR_24 PF23276 143 - 255 2.6e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 155 - 202 2.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 155 - 185 2.6e-12 PPR repeat
PPR_2 PF13041 156 - 204 5.3e-18 PPR repeat family
PPR PF01535 160 - 188 5.9e-07 PPR repeat
PPR_1 PF12854 188 - 224 3.6e-07 PPR repeat
PPR_long PF17177 195 - 285 6.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 211 - 245 4e-11 PPR repeat family
PPR_3 PF13812 219 - 277 7.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 227 - 257 1.2e-13 PPR repeat
PPR_2 PF13041 231 - 279 1.3e-15 PPR repeat family
PPR PF01535 234 - 264 5e-06 PPR repeat
PPR_3 PF13812 255 - 312 1.6e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 266 - 315 3.5e-16 PPR repeat family
PPR_long PF17177 286 - 412 7.1e-13 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 291 - 348 2.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 299 - 330 7.5e-12 PPR repeat
PPR PF01535 304 - 334 8.6e-08 PPR repeat
PPR_2 PF13041 308 - 350 8.7e-11 PPR repeat family
PPR_3 PF13812 325 - 384 1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 332 - 364 1.3e-09 PPR repeat
TPR_24 PF23276 338 - 428 1.8e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 361 - 417 5.9e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 367 - 397 1.6e-07 PPR repeat
PPR_2 PF13041 371 - 418 1.1e-12 PPR repeat family
TPR_24 PF23276 378 - 472 9.9e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 410 - 455 1.2e-09 PPR repeat family
PPR_long PF17177 427 - 521 3.8e-12 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 433 - 485 1.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 437 - 470 1.7e-14 PPR repeat
PPR_2 PF13041 441 - 490 1.5e-16 PPR repeat family
PPR PF01535 444 - 472 1.8e-09 PPR repeat
PPR_3 PF13812 465 - 524 7.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 474 - 505 2.8e-08 PPR repeat
PPR_2 PF13041 476 - 522 1.5e-15 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 798, 903
AccB7I CCANNNNNTGG 1 cut(s) 1267
AccII CGCG 5 cut(s) 843, 845, 1035, 1340, 1580
AciI CCGC 2 cut(s) 726, 841
AclWI GGATC 5 cut(s) 153, 983, 1109, 1403, 1577
AcsI RAATTY 3 cut(s) 73, 455, 862
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 2 cut(s) 348, 1733
AfiI CCNNNNNNNGG 1 cut(s) 1267
AflII CTTAAG 1 cut(s) 1067
AgsI TTSAA 8 cut(s) 72, 191, 640, 745, 874, 928, 1652, 1741
AloI GAACNNNNNNTCC 2 cut(s) 1721, 1753
Alw21I GWGCWC 2 cut(s) 922, 1647
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 5 cut(s) 153, 983, 1109, 1403, 1577
Ama87I CYCGRG 2 cut(s) 335, 449
AoxI GGCC 1 cut(s) 1619
ApeKI GCWGC 2 cut(s) 1127, 1299
ApoI RAATTY 3 cut(s) 73, 455, 862
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
AseI ATTAAT 1 cut(s) 495
AspLEI GCGC 2 cut(s) 845, 1340
AspS9I GGNCC 1 cut(s) 838
AsuHPI GGTGA 3 cut(s) 561, 962, 1296
AvaI CYCGRG 2 cut(s) 335, 449
AvaII GGWCC 1 cut(s) 838
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 922, 1647
BbvI GCAGC 2 cut(s) 1114, 1286
BccI CCATC 5 cut(s) 297, 826, 847, 1031, 1525
BceAI ACGGC 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 3 cut(s) 768, 1286, 1314
BfrI CTTAAG 1 cut(s) 1067
BglII AGATCT 1 cut(s) 1784
BisI GCNGC 2 cut(s) 1128, 1300
BlsI GCNGC 2 cut(s) 1129, 1301
BmcAI AGTACT 1 cut(s) 1733
Bme18I GGWCC 1 cut(s) 838
BmeT110I CYCGRG 2 cut(s) 335, 449
BmgT120I GGNCC 1 cut(s) 838
BmsI GCATC 6 cut(s) 264, 517, 705, 1090, 1708, 1722
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 1774, 1806
Bsa29I ATCGAT 3 cut(s) 292, 522, 1716
BsaBI GATNNNNATC 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 1201
BsaXI ACNNNNNCTCC 2 cut(s) 1721, 1751
Bsc4I CCNNNNNNNGG 1 cut(s) 1267
Bse3DI GCAATG 1 cut(s) 1692
Bse8I GATNNNNATC 1 cut(s) 701
BseCI ATCGAT 3 cut(s) 292, 522, 1716
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 7 cut(s) 417, 555, 760, 837, 1199, 1513, 1619
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 1 cut(s) 1267
BseMI GCAATG 1 cut(s) 1692
BseMII CTCAG 2 cut(s) 71, 1805
BseRI GAGGAG 1 cut(s) 1513
BseXI GCAGC 2 cut(s) 1114, 1286
BsgI GTGCAG 2 cut(s) 364, 1471
Bsh1236I CGCG 5 cut(s) 843, 845, 1035, 1340, 1580
BshFI GGCC 1 cut(s) 1621
BshVI ATCGAT 3 cut(s) 292, 522, 1716
BsiHKAI GWGCWC 2 cut(s) 922, 1647
BsiHKCI CYCGRG 2 cut(s) 335, 449
BsiSI CCGG 1 cut(s) 1202
BslI CCNNNNNNNGG 1 cut(s) 1267
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 1 cut(s) 1621
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 2 cut(s) 335, 449
Bsp1286I GDGCHC 2 cut(s) 922, 1647
Bsp19I CCATGG 1 cut(s) 342
Bsp68I TCGCGA 1 cut(s) 1035
BspACI CCGC 2 cut(s) 726, 841
BspANI GGCC 1 cut(s) 1621
BspCNI CTCAG 2 cut(s) 70, 1804
BspDI ATCGAT 3 cut(s) 292, 522, 1716
BspFNI CGCG 5 cut(s) 843, 845, 1035, 1340, 1580
BspPI GGATC 5 cut(s) 153, 983, 1109, 1403, 1577
BspTI CTTAAG 1 cut(s) 1067
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 1692
BssECI CCNNGG 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 342
Bst4CI ACNGT 4 cut(s) 580, 682, 1225, 1642
BstAFI CTTAAG 1 cut(s) 1067
BstDEI CTNAG 5 cut(s) 57, 384, 410, 966, 1791
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 7 cut(s) 417, 555, 760, 837, 1199, 1513, 1619
BstFNI CGCG 5 cut(s) 843, 845, 1035, 1340, 1580
BstHHI GCGC 2 cut(s) 845, 1340
BstMAI GTCTC 1 cut(s) 332
BstMWI GCNNNNNNNGC 2 cut(s) 485, 1262
BstUI CGCG 5 cut(s) 843, 845, 1035, 1340, 1580
BstV1I GCAGC 2 cut(s) 1114, 1286
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 3 cut(s) 158, 1408, 1784
BstYI RGATCY 3 cut(s) 158, 1408, 1784
Bsu15I ATCGAT 3 cut(s) 292, 522, 1716
BsuRI GGCC 1 cut(s) 1621
BsuTUI ATCGAT 3 cut(s) 292, 522, 1716
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 2 cut(s) 1050, 1070
BtsCI GGATG 7 cut(s) 417, 555, 760, 837, 1199, 1513, 1619
BtsI GCAGTG 1 cut(s) 1357
BtsIMutI CAGTG 1 cut(s) 1357
BtuMI TCGCGA 1 cut(s) 1035
CfoI GCGC 2 cut(s) 845, 1340
Cfr13I GGNCC 1 cut(s) 838
ClaI ATCGAT 3 cut(s) 292, 522, 1716
CseI GACGC 2 cut(s) 218, 1586
Csp6I GTAC 2 cut(s) 347, 1732
CviAII CATG 2 cut(s) 297, 343
CviQI GTAC 2 cut(s) 347, 1732
DdeI CTNAG 5 cut(s) 57, 384, 410, 966, 1791
DraI TTTAAA 1 cut(s) 648
EciI GGCGGA 1 cut(s) 741
Eco130I CCWWGG 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 1621
Eco31I GGTCTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 1440
Eco47I GGWCC 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 156
Eco88I CYCGRG 2 cut(s) 335, 449
EcoRV GATATC 1 cut(s) 1440
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 300, 346
FatI CATG 2 cut(s) 296, 342
FauNDI CATATG 1 cut(s) 1377
Fnu4HI GCNGC 2 cut(s) 1128, 1300
FokI GGATG 7 cut(s) 404, 562, 767, 844, 1206, 1500, 1626
Fsp4HI GCNGC 2 cut(s) 1128, 1300
FspBI CTAG 3 cut(s) 768, 1286, 1314
GlaI GCGC 2 cut(s) 844, 1339
GluI GCNGC 2 cut(s) 1128, 1300
HaeIII GGCC 1 cut(s) 1621
HapII CCGG 1 cut(s) 1202
HgaI GACGC 2 cut(s) 218, 1586
HhaI GCGC 2 cut(s) 845, 1340
Hin1II CATG 2 cut(s) 300, 346
Hin6I GCGC 2 cut(s) 843, 1338
HinP1I GCGC 2 cut(s) 843, 1338
HincII GTYRAC 2 cut(s) 1092, 1213
HindII GTYRAC 2 cut(s) 1092, 1213
HindIII AAGCTT 3 cut(s) 746, 1070, 1473
HpaI GTTAAC 2 cut(s) 1092, 1213
HpaII CCGG 1 cut(s) 1202
HphI GGTGA 3 cut(s) 561, 962, 1296
Hpy166II GTNNAC 6 cut(s) 623, 792, 838, 1092, 1199, 1213
Hpy8I GTNNAC 6 cut(s) 623, 792, 838, 1092, 1199, 1213
HpyCH4III ACNGT 4 cut(s) 580, 682, 1225, 1642
HpyCH4IV ACGT 1 cut(s) 1235
HpyCH4V TGCA 4 cut(s) 381, 1452, 1557, 1750
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 1262
HpyF3I CTNAG 5 cut(s) 57, 384, 410, 966, 1791
HpySE526I ACGT 1 cut(s) 1235
Hsp92II CATG 2 cut(s) 300, 346
HspAI GCGC 2 cut(s) 843, 1338
KspAI GTTAAC 2 cut(s) 1092, 1213
LmnI GCTCC 4 cut(s) 116, 176, 1347, 1500
Lsp1109I GCAGC 2 cut(s) 1114, 1286
LweI GCATC 6 cut(s) 264, 517, 705, 1090, 1708, 1722
MaeI CTAG 3 cut(s) 768, 1286, 1314
MaeII ACGT 1 cut(s) 1235
MaeIII GTNAC 6 cut(s) 356, 580, 1000, 1371, 1397, 1525
MboII GAAGA 9 cut(s) 69, 162, 243, 277, 394, 956, 1055, 1061, 1779
MflI RGATCY 3 cut(s) 158, 1408, 1784
MhlI GDGCHC 2 cut(s) 922, 1647
MluCI AATT 6 cut(s) 73, 310, 455, 667, 862, 869
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 1248
MnlI CCTC 8 cut(s) 25, 125, 611, 764, 806, 1491, 1567, 1737
MspCI CTTAAG 1 cut(s) 1067
MspI CCGG 1 cut(s) 1202
MvnI CGCG 5 cut(s) 843, 845, 1035, 1340, 1580
MwoI GCNNNNNNNGC 2 cut(s) 485, 1262
NcoI CCATGG 1 cut(s) 342
NdeI CATATG 1 cut(s) 1377
NlaIII CATG 2 cut(s) 300, 346
NmuCI GTSAC 2 cut(s) 580, 1000
NruI TCGCGA 1 cut(s) 1035
PaeR7I CTCGAG 2 cut(s) 335, 449
PceI AGGCCT 1 cut(s) 1621
PcsI WCGNNNNNNNCGW 3 cut(s) 298, 1439, 1733
PfeI GAWTC 8 cut(s) 320, 445, 514, 519, 928, 1060, 1551, 1595
PflMI CCANNNNNTGG 1 cut(s) 1267
PkrI GCNGC 2 cut(s) 1129, 1301
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 495
PsiI TTATAA 2 cut(s) 798, 903
PspPI GGNCC 1 cut(s) 838
PsuI RGATCY 3 cut(s) 158, 1408, 1784
RruI TCGCGA 1 cut(s) 1035
RsaI GTAC 2 cut(s) 348, 1733
RsaNI GTAC 2 cut(s) 347, 1732
SatI GCNGC 2 cut(s) 1128, 1300
Sau96I GGNCC 1 cut(s) 838
ScaI AGTACT 1 cut(s) 1733
SchI GAGTC 1 cut(s) 81
SduI GDGCHC 2 cut(s) 922, 1647
SfaNI GCATC 6 cut(s) 264, 517, 705, 1090, 1708, 1722
Sfr274I CTCGAG 2 cut(s) 335, 449
SinI GGWCC 1 cut(s) 838
SlaI CTCGAG 2 cut(s) 335, 449
SmlI CTYRAG 3 cut(s) 335, 449, 1067
SmoI CTYRAG 3 cut(s) 335, 449, 1067
Sse9I AATT 6 cut(s) 73, 310, 455, 667, 862, 869
SseBI AGGCCT 1 cut(s) 1621
SsiI CCGC 2 cut(s) 726, 841
SspMI CTAG 3 cut(s) 768, 1286, 1314
StuI AGGCCT 1 cut(s) 1621
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 4 cut(s) 580, 682, 1225, 1642
TaiI ACGT 1 cut(s) 1238
TasI AATT 6 cut(s) 73, 310, 455, 667, 862, 869
TatI WGTACW 1 cut(s) 1731
TfiI GAWTC 8 cut(s) 320, 445, 514, 519, 928, 1060, 1551, 1595
TscAI CASTG 1 cut(s) 1357
TseFI GTSAC 2 cut(s) 580, 1000
TseI GCWGC 2 cut(s) 1127, 1299
Tsp45I GTSAC 2 cut(s) 580, 1000
TspDTI ATGAA 8 cut(s) 156, 527, 750, 1073, 1091, 1485, 1502, 1641
TspGWI ACGGA 2 cut(s) 99, 1206
TspRI CASTG 1 cut(s) 1357
Van91I CCANNNNNTGG 1 cut(s) 1267
Vha464I CTTAAG 1 cut(s) 1067
VpaK11BI GGWCC 1 cut(s) 838
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 3 cut(s) 73, 455, 862
XbaI TCTAGA 1 cut(s) 767
XhoI CTCGAG 2 cut(s) 335, 449
XspI CTAG 3 cut(s) 768, 1286, 1314
ZrmI AGTACT 1 cut(s) 1733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.