pycom04g20420

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
21932235 .. 21934136
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g20420.2

Sequence Viewer

Length: 1746 bp
ATGACAACAGTTGCCGCCAAGCTGTTGCCTCAGAGCCTCCACGTCACCACCCACCCGAACCCCTCCTCCCACCAGACCAGTGCCGTGAGCTGCAGGGTTTGCATTTCGTCAAACGGCGGAAACCGCCGCAGAAACCCGCCAAAGGCGGCGGCTTCCGCCGAAGCAAGACCGACCCAGTTGCAGAACAATGATGTCAAAGAAACCCATTTGGTGAAAGTTCTCAACAGGTCCTGCAAAGCAGGGCAGTACAATGAAGCACTCTATTTTCTTGAGCTGATGGTGAACAAGGGCTACAAGCCTGATGTGATTCTCTGCACAAAGCTCGTCAAAGGGTTCTTCAATTCGAGAAATGTCGAAAAGGCCGTTCGGGTTATGCAGATTTTGGAGAAGTATGGTGAGCCTGATTTGTTTTCATACAATGCGTTGATCAGCGGTTTCTGTAAGGCAAATCGGATTGATGCAGCAAACAAAGTGCTTGATAGGATGAGGAGCCAGGGGTTCTCACCTGATGTTGTTACTTACAATATAATGATTGGGAGTCTTTGTGGGAGGGGGAAGCTAGGATTAGCTTTGAAGGTTTTGGATCAGTTGGTGAAGGATAATTGCAGGCCAACTGTGATTACTTACACGATTTTGATCGAAGCAACGATTCCTGAAGGCGGAATTGATGAAGCAATGAAGCTTTTGGATGAGATGTTGTCAAGAGGGCTTAAACCTGACATGCATACTTACAATGCAGTTGTTAGGGGAATGTGCAGAGAAGGGATGCTGGATAGGGCTTTCGAGTTTGTTAGGAGCTTAGATTTGAAGGGATGTTCGCCTAATGTCGTCTCGTACAACATTTTGTTACGAGCGCTATTGAATCGAGGTAAATGGGAAGAAGGGGAGAAGCTGGTGAGCAATATGTGCTCGAGAGGCTGTGAGCCGAACGTGGTGACTTACAGCATTTTGATTAGCACGCTGTGTCGCGATGGCAAAGTTGAGGATGCAGTGAATGTGTTAAAGATCATGAAGGACAAGGGGTTGACTCCGGATGCGTACAGTTATGATCCGTTGGTTTCTGCTTTCTGCAAAGAGGGGAGATTGGATTTGGCAATAGAGTTTTTGGATTACATGATATCGGATGGCTGCTTGCCGGATATTGTGAACTACAACACGATATTGGCTGCGTTGTGTAAGAGTGGAAAGGCTGATCAGGCTTTGCAAATCTTCGAGAACCTCGGTGAAGTGGGATGTCCTCCGAATGTGAGCTCATACAACACCATGTTCAGTGCACTGTGGAACTGTGGAGACAGAGTTCGAGCTTTGCAAATGGTATCAGAAATGGTAAGCAAAGGAATTGATCCTGATGGGATTACTTACAATTCACTTATATCGTGTTTATGCAGAGATGGGATGGTGAATGAGGCTATAGGGTTGTTGGTAGACATGGAAACTGGTGGCTTTCAGCCAACAGTTATCAGTTACAACATTGTTCTTCTCGGGTTGTGCAAAACGCGTAGGATTGTCGATGCCATTGAAGTGCTCGCGGCAATGGTTGAAAAGGGCTGCCGGCCAAATGAAACTACCTACACTTTGTTGATTGAAGGAATTGGTTTCGCAGGATGGCGAGCTGAAGCGATGCAGCTTGCCCACTCAGTTTTTAGTTTAAGGGTGATTTCCGAAGATTCGTTCAGACGTTTGAATAGGACCTTTCCCATGCTTGATGTGTACAAAGAGCTTACTCTGTCTGAGATTAAGAACTAG

Protein Analysis

582

Amino Acids

64.3

Weight (kDa)

7.95

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1425
AccII CGCG 3 cut(s) 969, 1498, 1529
AccIII TCCGGA 1 cut(s) 1030
AclWI GGATC 3 cut(s) 591, 1043, 1337
AcoI YGGCCR 1 cut(s) 1553
AcuI CTGAAG 2 cut(s) 675, 1635
AdeI CACNNNGTG 1 cut(s) 963
AfaI GTAC 4 cut(s) 248, 836, 1040, 1712
AfeI AGCGCT 1 cut(s) 855
AfiI CCNNNNNNNGG 2 cut(s) 142, 659
AflIII ACRYGT 1 cut(s) 1496
AgsI TTSAA 8 cut(s) 340, 574, 808, 862, 1520, 1541, 1586, 1684
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 492
AloI GAACNNNNNNTCC 4 cut(s) 50, 82, 1281, 1313
Alw21I GWGCWC 4 cut(s) 911, 1253, 1276, 1527
Alw26I GTCTC 2 cut(s) 835, 1284
Alw44I GTGCAC 1 cut(s) 1272
AlwI GGATC 3 cut(s) 591, 1043, 1337
AlwNI CAGNNNCTG 1 cut(s) 231
Ama87I CYCGRG 2 cut(s) 910, 1481
Aor13HI TCCGGA 1 cut(s) 1030
Aor51HI AGCGCT 1 cut(s) 855
AoxI GGCC 3 cut(s) 360, 608, 1553
ApaLI GTGCAC 1 cut(s) 1272
ApeKI GCWGC 6 cut(s) 90, 461, 1128, 1166, 1548, 1624
AspLEI GCGC 1 cut(s) 856
AspS9I GGNCC 2 cut(s) 228, 1689
AvaI CYCGRG 2 cut(s) 910, 1481
AvaII GGWCC 2 cut(s) 228, 1689
BaeGI GKGCMC 1 cut(s) 1276
BanII GRGCYC 1 cut(s) 1253
Bbv12I GWGCWC 4 cut(s) 911, 1253, 1276, 1527
BbvI GCAGC 6 cut(s) 77, 473, 1115, 1153, 1535, 1636
BccI CCATC 7 cut(s) 271, 965, 1118, 1343, 1385, 1390, 1599
BceAI ACGGC 3 cut(s) 68, 130, 347
BcgI CGANNNNNNTGC 4 cut(s) 160, 194, 304, 338
BciT130I CCWGG 1 cut(s) 494
BclI TGATCA 2 cut(s) 426, 1192
BcoDI GTCTC 2 cut(s) 835, 1284
BfaI CTAG 2 cut(s) 560, 1744
BfmI CTRYAG 2 cut(s) 91, 1410
BfoI RGCGCY 1 cut(s) 857
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 2 cut(s) 228, 1689
BmeT110I CYCGRG 2 cut(s) 910, 1481
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 228, 1689
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 494
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 6 cut(s) 448, 756, 976, 1024, 1501, 1611
BmuI ACTGGG 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 635
BsaJI CCNNGG 2 cut(s) 493, 1219
BsaWI WCCGGW 1 cut(s) 1030
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 529, 559, 1281, 1311
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 659
Bse118I RCCGGY 1 cut(s) 1551
Bse1I ACTGG 3 cut(s) 78, 175, 1441
Bse3DI GCAATG 2 cut(s) 681, 1539
Bse8I GATNNNNATC 1 cut(s) 635
BseAI TCCGGA 1 cut(s) 1030
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 2 cut(s) 493, 1219
BseJI GATNNNNATC 1 cut(s) 635
BseLI CCNNNNNNNGG 2 cut(s) 142, 659
BseMI GCAATG 2 cut(s) 681, 1539
BseMII CTCAG 3 cut(s) 44, 1650, 1722
BseNI ACTGG 3 cut(s) 78, 175, 1441
BseRI GAGGAG 2 cut(s) 55, 502
BseSI GKGCMC 1 cut(s) 1276
BseXI GCAGC 6 cut(s) 77, 473, 1115, 1153, 1535, 1636
BsgI GTGCAG 2 cut(s) 298, 775
Bsh1236I CGCG 3 cut(s) 969, 1498, 1529
BshFI GGCC 3 cut(s) 362, 610, 1555
BsiHKAI GWGCWC 4 cut(s) 911, 1253, 1276, 1527
BsiHKCI CYCGRG 2 cut(s) 910, 1481
BsiSI CCGG 3 cut(s) 1031, 1136, 1552
BslI CCNNNNNNNGG 2 cut(s) 142, 659
BsmAI GTCTC 2 cut(s) 835, 1284
BsmBI CGTCTC 1 cut(s) 835
BsnI GGCC 3 cut(s) 362, 610, 1555
BsoBI CYCGRG 2 cut(s) 910, 1481
Bsp1286I GDGCHC 4 cut(s) 911, 1253, 1276, 1527
Bsp13I TCCGGA 1 cut(s) 1030
Bsp1407I TGTACA 1 cut(s) 1710
Bsp143I GATC 7 cut(s) 426, 583, 636, 1005, 1048, 1192, 1342
Bsp68I TCGCGA 1 cut(s) 969
BspANI GGCC 3 cut(s) 362, 610, 1555
BspCNI CTCAG 3 cut(s) 43, 1649, 1723
BspEI TCCGGA 1 cut(s) 1030
BspFNI CGCG 3 cut(s) 969, 1498, 1529
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 1 cut(s) 491
BspMAI CTGCAG 1 cut(s) 95
BspPI GGATC 3 cut(s) 591, 1043, 1337
BsrDI GCAATG 2 cut(s) 681, 1539
BsrFI RCCGGY 1 cut(s) 1551
BsrGI TGTACA 1 cut(s) 1710
BsrI ACTGG 3 cut(s) 78, 175, 1441
BssAI RCCGGY 1 cut(s) 1551
BssECI CCNNGG 2 cut(s) 493, 1219
BssMI GATC 7 cut(s) 426, 583, 636, 1005, 1048, 1192, 1342
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 6 cut(s) 10, 616, 1043, 1278, 1286, 1456
BstAPI GCANNNNNTGC 2 cut(s) 99, 906
BstAUI TGTACA 1 cut(s) 1710
BstC8I GCNNGC 7 cut(s) 608, 959, 1133, 1527, 1553, 1611, 1629
BstDEI CTNAG 4 cut(s) 30, 799, 1636, 1731
BstFNI CGCG 3 cut(s) 969, 1498, 1529
BstH2I RGCGCY 1 cut(s) 857
BstHHI GCGC 1 cut(s) 856
BstKTI GATC 7 cut(s) 429, 586, 639, 1008, 1051, 1195, 1345
BstMAI GTCTC 2 cut(s) 835, 1284
BstMBI GATC 7 cut(s) 426, 583, 636, 1005, 1048, 1192, 1342
BstMWI GCNNNNNNNGC 6 cut(s) 99, 123, 155, 906, 915, 1196
BstNI CCWGG 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 2 cut(s) 91, 1410
BstSLI GKGCMC 1 cut(s) 1276
BstUI CGCG 3 cut(s) 969, 1498, 1529
BstV1I GCAGC 6 cut(s) 77, 473, 1115, 1153, 1535, 1636
BsuRI GGCC 3 cut(s) 362, 610, 1555
BtgZI GCGATG 2 cut(s) 984, 1634
BtrI CACGTC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 4 cut(s) 85, 996, 1274, 1276
BtuMI TCGCGA 1 cut(s) 969
Cac8I GCNNGC 7 cut(s) 608, 959, 1133, 1527, 1553, 1611, 1629
CaiI CAGNNNCTG 1 cut(s) 231
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 1 cut(s) 856
Cfr10I RCCGGY 1 cut(s) 1551
Cfr13I GGNCC 2 cut(s) 228, 1689
Csp6I GTAC 4 cut(s) 247, 835, 1039, 1711
CviAII CATG 6 cut(s) 721, 1009, 1114, 1264, 1429, 1699
CviQI GTAC 4 cut(s) 247, 835, 1039, 1711
DdeI CTNAG 4 cut(s) 30, 799, 1636, 1731
DpnI GATC 7 cut(s) 428, 585, 638, 1007, 1050, 1194, 1344
DpnII GATC 7 cut(s) 426, 583, 636, 1005, 1048, 1192, 1342
DraIII CACNNNGTG 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 1553
EciI GGCGGA 3 cut(s) 132, 145, 675
Ecl136II GAGCTC 1 cut(s) 1251
Eco24I GRGCYC 1 cut(s) 1253
Eco32I GATATC 1 cut(s) 1119
Eco47I GGWCC 2 cut(s) 228, 1689
Eco47III AGCGCT 1 cut(s) 855
Eco53kI GAGCTC 1 cut(s) 1251
Eco57I CTGAAG 2 cut(s) 675, 1635
Eco88I CYCGRG 2 cut(s) 910, 1481
EcoICRI GAGCTC 1 cut(s) 1251
EcoO109I RGGNCCY 2 cut(s) 228, 1689
EcoRII CCWGG 1 cut(s) 492
EcoRV GATATC 1 cut(s) 1119
EcoT22I ATGCAT 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 1253
Esp3I CGTCTC 1 cut(s) 835
FaeI CATG 6 cut(s) 724, 1012, 1117, 1267, 1432, 1702
FatI CATG 6 cut(s) 720, 1008, 1113, 1263, 1428, 1698
FauI CCCGC 1 cut(s) 144
FbaI TGATCA 2 cut(s) 426, 1192
FblI GTMKAC 1 cut(s) 1425
FriOI GRGCYC 1 cut(s) 1253
FspBI CTAG 2 cut(s) 560, 1744
GlaI GCGC 1 cut(s) 855
HaeII RGCGCY 1 cut(s) 857
HaeIII GGCC 3 cut(s) 362, 610, 1555
HapII CCGG 3 cut(s) 1031, 1136, 1552
HhaI GCGC 1 cut(s) 856
Hin1II CATG 6 cut(s) 724, 1012, 1117, 1267, 1432, 1702
Hin6I GCGC 1 cut(s) 854
HinP1I GCGC 1 cut(s) 854
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 6 cut(s) 307, 538, 649, 862, 1027, 1667
HpaII CCGG 3 cut(s) 1031, 1136, 1552
Hpy166II GTNNAC 6 cut(s) 283, 1026, 1147, 1274, 1426, 1711
Hpy188I TCNGA 8 cut(s) 33, 453, 1123, 1242, 1321, 1663, 1676, 1732
Hpy8I GTNNAC 6 cut(s) 283, 1026, 1147, 1274, 1426, 1711
HpyAV CCTTC 8 cut(s) 568, 589, 650, 755, 802, 875, 1006, 1580
HpyCH4III ACNGT 6 cut(s) 10, 616, 1043, 1278, 1286, 1456
HpyCH4IV ACGT 3 cut(s) 42, 930, 1678
HpyF10VI GCNNNNNNNGC 6 cut(s) 99, 123, 155, 906, 915, 1196
HpyF3I CTNAG 4 cut(s) 30, 799, 1636, 1731
HpySE526I ACGT 3 cut(s) 42, 930, 1678
Hsp92II CATG 6 cut(s) 724, 1012, 1117, 1267, 1432, 1702
HspAI GCGC 1 cut(s) 854
Kpn2I TCCGGA 1 cut(s) 1030
KroI GCCGGC 1 cut(s) 1551
KroNI GCCGGC 1 cut(s) 1553
Ksp22I TGATCA 2 cut(s) 426, 1192
Kzo9I GATC 7 cut(s) 426, 583, 636, 1005, 1048, 1192, 1342
LmnI GCTCC 2 cut(s) 489, 795
Lsp1109I GCAGC 6 cut(s) 77, 473, 1115, 1153, 1535, 1636
LweI GCATC 6 cut(s) 448, 756, 976, 1024, 1501, 1611
MaeI CTAG 2 cut(s) 560, 1744
MaeII ACGT 3 cut(s) 42, 930, 1678
MaeIII GTNAC 5 cut(s) 43, 514, 846, 934, 1463
MalI GATC 7 cut(s) 428, 585, 638, 1007, 1050, 1194, 1344
MboI GATC 7 cut(s) 426, 583, 636, 1005, 1048, 1192, 1342
MboII GAAGA 5 cut(s) 328, 890, 1201, 1469, 1676
MhlI GDGCHC 4 cut(s) 911, 1253, 1276, 1527
MluCI AATT 6 cut(s) 340, 601, 663, 1338, 1363, 1590
MluI ACGCGT 1 cut(s) 1496
MlyI GAGTC 2 cut(s) 547, 1021
Mph1103I ATGCAT 1 cut(s) 726
MroI TCCGGA 1 cut(s) 1030
MroNI GCCGGC 1 cut(s) 1551
MseI TTAA 4 cut(s) 711, 1001, 1649, 1737
MslI CAYNNNNRTG 1 cut(s) 1520
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 3 cut(s) 1031, 1136, 1552
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
MvnI CGCG 3 cut(s) 969, 1498, 1529
MwoI GCNNNNNNNGC 6 cut(s) 99, 123, 155, 906, 915, 1196
NaeI GCCGGC 1 cut(s) 1553
NdeII GATC 7 cut(s) 426, 583, 636, 1005, 1048, 1192, 1342
NgoMIV GCCGGC 1 cut(s) 1551
NlaIII CATG 6 cut(s) 724, 1012, 1117, 1267, 1432, 1702
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 2 cut(s) 43, 934
NruI TCGCGA 1 cut(s) 969
NsiI ATGCAT 1 cut(s) 726
NspI RCATGY 1 cut(s) 724
PaeR7I CTCGAG 1 cut(s) 910
PagI TCATGA 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PdiI GCCGGC 1 cut(s) 1553
PfeI GAWTC 4 cut(s) 307, 649, 862, 1667
PleI GAGTC 2 cut(s) 546, 1021
PpsI GAGTC 2 cut(s) 546, 1021
PpuMI RGGWCCY 2 cut(s) 228, 1689
Psp124BI GAGCTC 1 cut(s) 1253
Psp5II RGGWCCY 2 cut(s) 228, 1689
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 2 cut(s) 228, 1689
PspPPI RGGWCCY 2 cut(s) 228, 1689
PsrI GAACNNNNNNTAC 2 cut(s) 275, 307
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 231
RruI TCGCGA 1 cut(s) 969
RsaI GTAC 4 cut(s) 248, 836, 1040, 1712
RsaNI GTAC 4 cut(s) 247, 835, 1039, 1711
RseI CAYNNNNRTG 1 cut(s) 1520
SacI GAGCTC 1 cut(s) 1253
SaqAI TTAA 4 cut(s) 711, 1001, 1649, 1737
Sau3AI GATC 7 cut(s) 426, 583, 636, 1005, 1048, 1192, 1342
Sau96I GGNCC 2 cut(s) 228, 1689
SchI GAGTC 2 cut(s) 547, 1021
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 4 cut(s) 911, 1253, 1276, 1527
SfaNI GCATC 6 cut(s) 448, 756, 976, 1024, 1501, 1611
SfcI CTRYAG 2 cut(s) 91, 1410
Sfr274I CTCGAG 1 cut(s) 910
SinI GGWCC 2 cut(s) 228, 1689
SlaI CTCGAG 1 cut(s) 910
SmiMI CAYNNNNRTG 1 cut(s) 1520
SmlI CTYRAG 2 cut(s) 269, 910
SmoI CTYRAG 2 cut(s) 269, 910
Sse9I AATT 6 cut(s) 340, 601, 663, 1338, 1363, 1590
SspMI CTAG 2 cut(s) 560, 1744
SstI GAGCTC 1 cut(s) 1253
StyD4I CCNGG 1 cut(s) 492
TaaI ACNGT 6 cut(s) 10, 616, 1043, 1278, 1286, 1456
TaiI ACGT 3 cut(s) 45, 933, 1681
TaqI TCGA 9 cut(s) 344, 354, 639, 783, 865, 911, 1212, 1300, 1509
TaqII GACCGA 1 cut(s) 184
TasI AATT 6 cut(s) 340, 601, 663, 1338, 1363, 1590
TatI WGTACW 2 cut(s) 246, 1710
TauI GCSGC 5 cut(s) 17, 129, 149, 152, 1532
TfiI GAWTC 4 cut(s) 307, 649, 862, 1667
Tru1I TTAA 4 cut(s) 711, 1001, 1649, 1737
Tru9I TTAA 4 cut(s) 711, 1001, 1649, 1737
TscAI CASTG 4 cut(s) 85, 996, 1276, 1281
TseFI GTSAC 2 cut(s) 43, 934
TseI GCWGC 6 cut(s) 90, 461, 1128, 1166, 1548, 1624
Tsp45I GTSAC 2 cut(s) 43, 934
TspDTI ATGAA 6 cut(s) 267, 402, 684, 692, 1025, 1575
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 4 cut(s) 85, 996, 1276, 1281
VneI GTGCAC 1 cut(s) 1272
VpaK11BI GGWCC 2 cut(s) 228, 1689
XceI RCATGY 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 1425
XspI CTAG 2 cut(s) 560, 1744
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.