Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009511

Physical Location & Seq

Genomic Coordinates Reverse (-)

48113750 .. 48115516

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGGCAATAGTCTCCACTGAGTTATTGTCCCATAGCTTCCACACTACCTCCCAACTCAAACCCACTTCCCATTCCCACCACCCCACTACTTTGAGTTACAGACCTTCTTCTTCCTCCTCTTCAATCTCAAATGGCAGAAACAACACCTCCAGAAACCTAACAAGGGTGTCTGTCTCTGCTGAACCAAAACCAACACACTTGCAAAACCATGATTACAAAGAGACCCACTTGATCAAAGTCCTCAACAGGTCTTGCAAAGCAGGCCAGTACAGTGAAGCCTTCTACTTTCTTGAGCTCATGGTCAACAAGGGCTACAAGCCTGATGTGATTCTCTGCACCAAGCTCATCAAAGGCTTCTTCAACTCGAGAAACATCGAAAAGGCCATTCGGGTTATGCAAATATTGGAACAGTATGGGGACCCTGATTTGTTTTCATACAATGCTTTGATCAGTGGGTTCTGTAAGGCCAATAGGATTGAATCAGCAAACAAAGTTCTTGATAGAATGAAGAGTCAGGGGTTCAAGCCTGATGTTGTTACATATAATATAATGATTGGGAGTCTCTGTAGTAGAGGGAAGCTTGGGTTAGCTAGGAAGGTTATGGATCGTTTAGTGAAAGACAATTGCAAGCCTACTGTGATTACATATACAATATTGATAGAAGCTACTATTCTTGATGGTGGGATTGATGAAGCTATGAAGCTTTTGGATGAGATGTTGTCTAGAGGGCTTAGACCTGATATGTACACTTACAATGCCATTGTTAGAGGAATGTGCAGGGAAGGAATGCTGGATAGAGCTTTTGAGTTTGTTAGGTGCTTTGATGCTAAAGGCTGTGCGCCGAATGTGATCTCATACAACATATTGTTGCGTGCGCTTTTGAACCGTGGGAAGTGGGAGGAAGGTGAGAATCTAGTGAGCAATATGTGTGCAAGAGGTTGTGAGCCTAATGTGGTGACTTATAGCATCTTGATTAGCACGCTGTGCCGCGATGGGAAAGTTGAGGATGCAGTGAATGTGTTGAAGATTATGAAGGAAAAGGGGTTAACTCCAGATGCTTATAGTTACGATCCATTGATTTCGACTTTCTGCAAAGAAGGGAGGTTAGATTTAGCAATAGAGTTTTTGGATTGTATGATATCTGATGGTTGCTTGCCAGACATTGTGAACTACAATACAATCTTGGCTGCTTTGTGCAAGAATGGGAGTGCTGATCACGCTTTGGAAATCTTCGAGAACTTGGGTGAAGTCGGTTGTCCTCCAAATGTGAGTTCCTACAACACAATGTTCAGTGCATTGTGGAATTGTGGAGATAGAGTAAGAGCTTTGGGAATGGTATCAGACATGGTAAGCAAAGGAATTGAGCCTGATGAGATCACATACAATTCGCTTATATCGTGTTTGTGCAGAGATGGGATGGTAAACGAGGCAATTGGGTTGTTGGTAGACATGGAAACTGGTGGTTTTCAGCCTACAGTTATCACTTACAATATTGTTCTTCTTGGGTTGAGCAAGGCTCGGAGGATTATCGATGCCATTGAAGTGTTCACAGCAATGGTTGAAAAGGGTTGCCGGCCTAACGAAACTACTTACATTTTGCTGATTGAAGGAATTGGATTTGCAGGATGGCGAGCTGAAGCTATGGAGCTTGCAAAATCTGTTTATAGTTTAAGGGCTATTTCCGAAGATTCTTTCAAACGCTTGAACAGGACCTTTCCCATGCTTGATGTTTACAAAGAGCTTACTCTGTCTGAGATTAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

588

Amino Acids

65.6

Weight (kDa)

6.76

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	66 - 218	3.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	98 - 153	4.8e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	141 - 187	3.6e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	141 - 189	8.5e-19	PPR repeat family
PPR_1	PF12854	141 - 170	1.1e-10	PPR repeat
PPR	PF01535	144 - 174	6.3e-08	PPR repeat
PPR_3	PF13812	164 - 222	5.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	173 - 203	3.9e-09	PPR repeat
PPR_2	PF13041	176 - 222	1.7e-14	PPR repeat family
TPR_24	PF23276	192 - 300	1.8e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	197 - 298	8.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	208 - 239	2.1e-07	PPR repeat
PPR_2	PF13041	227 - 260	1.7e-09	PPR repeat family
PPR_3	PF13812	234 - 293	9.6e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	242 - 272	8.4e-11	PPR repeat
PPR_2	PF13041	250 - 294	3.5e-10	PPR repeat family
PPR_2	PF13041	281 - 330	6e-17	PPR repeat family
PPR_long	PF17177	302 - 419	7.4e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	305 - 365	2.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	312 - 345	7.2e-14	PPR repeat
PPR	PF01535	319 - 349	4.8e-07	PPR repeat
PPR_2	PF13041	319 - 364	2.9e-12	PPR repeat family
PPR_1	PF12854	347 - 379	9.4e-10	PPR repeat
TPR_24	PF23276	353 - 445	3.7e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	379 - 432	1.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	382 - 412	7.1e-08	PPR repeat
PPR_2	PF13041	386 - 433	4.4e-13	PPR repeat family
PPR_2	PF13041	421 - 470	1.5e-13	PPR repeat family
PPR_long	PF17177	442 - 536	1.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	446 - 500	2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	452 - 485	2.3e-13	PPR repeat
PPR_2	PF13041	456 - 505	1.8e-14	PPR repeat family
PPR	PF01535	459 - 488	2e-07	PPR repeat
PPR_3	PF13812	480 - 539	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	491 - 537	2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04760 AT3G04760
fragaria_vesca	FvH4_6g01920
malus_domestica	MD04G1230300.v1.1 MD12G1247200.v1.1 MD12G1247400.v1.1
prunus_persica	Prupe.6G350200_v2.0.a1
pyrus_communis	pycom04g20420
rosa_chinensis	RchiOBHm_Chr3g0449651
rosa_laevigata	RLG00000025811
rosa_multiflora	Rmu_co8354861.1_g000001 Rmu_sc0007357.1_g000002 Rmu_sc0009629.1_g000012 Rmu_sc0009629.1_g000013 Rmu_sc0010999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427550
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh3AG020600 Rh3BG021300 Rh3CG019800 Rh3DG021100
rosa_wichuraiana	Rw3G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1446
AccII	CGCG	1 cut(s)	990
AciI	CCGC	1 cut(s)	988
AclWI	GGATC	2 cut(s)	612, 1064
AcuI	CTGAAG	1 cut(s)	1656
AdeI	CACNNNGTG	1 cut(s)	984
AfaI	GTAC	2 cut(s)	269, 746
AfiI	CCNNNNNNNGG	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	2 cut(s)	1255, 1287
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	4 cut(s)	16, 178, 215, 566
AlwI	GGATC	2 cut(s)	612, 1064
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	4 cut(s)	262, 381, 465, 1574
ApeKI	GCWGC	1 cut(s)	1187
AspLEI	GCGC	2 cut(s)	841, 877
AspS9I	GGNCC	2 cut(s)	418, 1710
AsuHPI	GGTGA	3 cut(s)	917, 967, 1256
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	418, 1710
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	1174
BccI	CCATC	6 cut(s)	671, 986, 1139, 1406, 1411, 1620
BclI	TGATCA	3 cut(s)	231, 447, 1213
BcoDI	GTCTC	4 cut(s)	16, 178, 215, 566
BfaI	CTAG	4 cut(s)	591, 723, 914, 1765
BfmI	CTRYAG	2 cut(s)	565, 1473
BisI	GCNGC	2 cut(s)	988, 1188
BlsI	GCNGC	2 cut(s)	989, 1189
Bme18I	GGWCC	2 cut(s)	418, 1710
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	418, 1710
BmiI	GGNNCC	2 cut(s)	419, 420
BmsI	GCATC	5 cut(s)	814, 975, 997, 1045, 1522
BplI	GAGNNNNNCTC	2 cut(s)	1501, 1533
BpmI	CTGGAG	2 cut(s)	133, 1035
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	1530
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	886
BsaXI	ACNNNNNCTCC	8 cut(s)	32, 62, 131, 161, 550, 580, 1302, 1332
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	1572
Bse1I	ACTGG	2 cut(s)	265, 1462
Bse3DI	GCAATG	1 cut(s)	1560
BseCI	ATCGAT	1 cut(s)	1530
BseDI	CCNNGG	1 cut(s)	886
BseGI	GGATG	4 cut(s)	715, 1012, 1422, 1631
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	1560
BseMII	CTCAG	2 cut(s)	9, 1743
BseNI	ACTGG	2 cut(s)	265, 1462
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	1174
BsgI	GTGCAG	3 cut(s)	319, 796, 1426
Bsh1236I	CGCG	1 cut(s)	990
BshFI	GGCC	4 cut(s)	264, 383, 467, 1576
BshVI	ATCGAT	1 cut(s)	1530
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	1573
BslFI	GGGAC	2 cut(s)	13, 431
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	4 cut(s)	16, 178, 215, 566
BsmFI	GGGAC	2 cut(s)	13, 431
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	4 cut(s)	264, 383, 467, 1576
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	7 cut(s)	231, 447, 604, 849, 1069, 1213, 1374
BspACI	CCGC	1 cut(s)	988
BspANI	GGCC	4 cut(s)	264, 383, 467, 1576
BspCNI	CTCAG	2 cut(s)	10, 1744
BspDI	ATCGAT	1 cut(s)	1530
BspFNI	CGCG	1 cut(s)	990
BspLI	GGNNCC	2 cut(s)	419, 420
BspPI	GGATC	2 cut(s)	612, 1064
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	1560
BsrFI	RCCGGY	1 cut(s)	1572
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	2 cut(s)	265, 1462
BssAI	RCCGGY	1 cut(s)	1572
BssECI	CCNNGG	1 cut(s)	886
BssMI	GATC	7 cut(s)	231, 447, 604, 849, 1069, 1213, 1374
Bst4CI	ACNGT	5 cut(s)	272, 411, 637, 887, 1477
Bst6I	CTCTTC	2 cut(s)	124, 503
BstAPI	GCANNNNNTGC	1 cut(s)	984
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	8 cut(s)	262, 629, 873, 980, 1154, 1574, 1632, 1650
BstDEI	CTNAG	3 cut(s)	18, 731, 1752
BstDSI	CCRYGG	1 cut(s)	886
BstF5I	GGATG	4 cut(s)	715, 1012, 1422, 1631
BstFNI	CGCG	1 cut(s)	990
BstHHI	GCGC	2 cut(s)	841, 877
BstKTI	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
BstMAI	GTCTC	4 cut(s)	16, 178, 215, 566
BstMBI	GATC	7 cut(s)	231, 447, 604, 849, 1069, 1213, 1374
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 984, 1217
BstSFI	CTRYAG	2 cut(s)	565, 1473
BstUI	CGCG	1 cut(s)	990
BstV1I	GCAGC	1 cut(s)	1174
Bsu15I	ATCGAT	1 cut(s)	1530
BsuRI	GGCC	4 cut(s)	264, 383, 467, 1576
BsuTUI	ATCGAT	1 cut(s)	1530
BtgI	CCRYGG	1 cut(s)	886
BtgZI	GCGATG	1 cut(s)	1005
BtsCI	GGATG	4 cut(s)	715, 1012, 1422, 1631
BtsI	GCAGTG	1 cut(s)	1017
BtsIMutI	CAGTG	5 cut(s)	15, 277, 457, 1017, 1297
Cac8I	GCNNGC	8 cut(s)	262, 629, 873, 980, 1154, 1574, 1632, 1650
CfoI	GCGC	2 cut(s)	841, 877
Cfr10I	RCCGGY	1 cut(s)	1572
Cfr13I	GGNCC	2 cut(s)	418, 1710
ClaI	ATCGAT	1 cut(s)	1530
Csp6I	GTAC	2 cut(s)	268, 745
CviAII	CATG	5 cut(s)	209, 298, 1345, 1450, 1720
CviQI	GTAC	2 cut(s)	268, 745
DdeI	CTNAG	3 cut(s)	18, 731, 1752
DpnI	GATC	7 cut(s)	233, 449, 606, 851, 1071, 1215, 1376
DpnII	GATC	7 cut(s)	231, 447, 604, 849, 1069, 1213, 1374
DraIII	CACNNNGTG	1 cut(s)	984
Eam1104I	CTCTTC	2 cut(s)	124, 503
EarI	CTCTTC	2 cut(s)	124, 503
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	1140
Eco47I	GGWCC	2 cut(s)	418, 1710
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	1656
Eco88I	CYCGRG	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	295
EcoO109I	RGGNCCY	2 cut(s)	418, 1710
EcoRV	GATATC	1 cut(s)	1140
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	5 cut(s)	212, 301, 1348, 1453, 1723
FaqI	GGGAC	2 cut(s)	13, 431
FatI	CATG	5 cut(s)	208, 297, 1344, 1449, 1719
FbaI	TGATCA	3 cut(s)	231, 447, 1213
FblI	GTMKAC	1 cut(s)	1446
Fnu4HI	GCNGC	2 cut(s)	988, 1188
FokI	GGATG	4 cut(s)	722, 1019, 1429, 1638
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	2 cut(s)	988, 1188
FspBI	CTAG	4 cut(s)	591, 723, 914, 1765
GlaI	GCGC	2 cut(s)	840, 876
GluI	GCNGC	2 cut(s)	988, 1188
GsuI	CTGGAG	2 cut(s)	133, 1035
HaeIII	GGCC	4 cut(s)	264, 383, 467, 1576
HapII	CCGG	1 cut(s)	1573
HhaI	GCGC	2 cut(s)	841, 877
Hin1II	CATG	5 cut(s)	212, 301, 1348, 1453, 1723
Hin6I	GCGC	2 cut(s)	839, 875
HinP1I	GCGC	2 cut(s)	839, 875
HincII	GTYRAC	2 cut(s)	304, 1047
HindII	GTYRAC	2 cut(s)	304, 1047
HindIII	AAGCTT	2 cut(s)	578, 701
HinfI	GANTC	6 cut(s)	328, 479, 511, 559, 910, 1688
HpaI	GTTAAC	1 cut(s)	1047
HpaII	CCGG	1 cut(s)	1573
HphI	GGTGA	3 cut(s)	917, 967, 1256
Hpy166II	GTNNAC	8 cut(s)	304, 747, 1047, 1168, 1423, 1447, 1548, 1732
Hpy188I	TCNGA	5 cut(s)	1144, 1342, 1521, 1684, 1753
Hpy188III	TCNNGA	9 cut(s)	150, 290, 366, 497, 674, 723, 970, 1052, 1234
Hpy8I	GTNNAC	8 cut(s)	304, 747, 1047, 1168, 1423, 1447, 1548, 1732
HpyAV	CCTTC	8 cut(s)	114, 289, 589, 776, 896, 1027, 1091, 1601
HpyCH4III	ACNGT	5 cut(s)	272, 411, 637, 887, 1477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 984, 1217
HpyF3I	CTNAG	3 cut(s)	18, 731, 1752
Hsp92II	CATG	5 cut(s)	212, 301, 1348, 1453, 1723
HspAI	GCGC	2 cut(s)	839, 875
KflI	GGGWCCC	1 cut(s)	418
KroI	GCCGGC	1 cut(s)	1572
KroNI	GCCGGC	1 cut(s)	1574
Ksp22I	TGATCA	3 cut(s)	231, 447, 1213
KspAI	GTTAAC	1 cut(s)	1047
Kzo9I	GATC	7 cut(s)	231, 447, 604, 849, 1069, 1213, 1374
LmnI	GCTCC	1 cut(s)	1645
Lsp1109I	GCAGC	1 cut(s)	1174
LweI	GCATC	5 cut(s)	814, 975, 997, 1045, 1522
MaeI	CTAG	4 cut(s)	591, 723, 914, 1765
MaeIII	GTNAC	4 cut(s)	95, 535, 955, 1064
MalI	GATC	7 cut(s)	233, 449, 606, 851, 1071, 1215, 1376
MboI	GATC	7 cut(s)	231, 447, 604, 849, 1069, 1213, 1374
MboII	GAAGA	9 cut(s)	99, 102, 111, 349, 520, 1036, 1222, 1490, 1697
MfeI	CAATTG	2 cut(s)	622, 1431
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	6 cut(s)	622, 1303, 1359, 1384, 1431, 1611
MlyI	GAGTC	2 cut(s)	520, 568
MroNI	GCCGGC	1 cut(s)	1572
MseI	TTAA	3 cut(s)	1046, 1670, 1758
MslI	CAYNNNNRTG	2 cut(s)	1541, 1553
MspI	CCGG	1 cut(s)	1573
MunI	CAATTG	2 cut(s)	622, 1431
Mva1269I	GAATGC	1 cut(s)	792
MvnI	CGCG	1 cut(s)	990
MwoI	GCNNNNNNNGC	3 cut(s)	261, 984, 1217
NaeI	GCCGGC	1 cut(s)	1574
NdeII	GATC	7 cut(s)	231, 447, 604, 849, 1069, 1213, 1374
NgoMIV	GCCGGC	1 cut(s)	1572
NlaIII	CATG	5 cut(s)	212, 301, 1348, 1453, 1723
NlaIV	GGNNCC	2 cut(s)	419, 420
NmuCI	GTSAC	1 cut(s)	955
PaeR7I	CTCGAG	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	1394
PctI	GAATGC	1 cut(s)	792
PdiI	GCCGGC	1 cut(s)	1574
PfeI	GAWTC	4 cut(s)	328, 479, 910, 1688
PkrI	GCNGC	2 cut(s)	989, 1189
PleI	GAGTC	2 cut(s)	519, 567
PpsI	GAGTC	2 cut(s)	519, 567
PpuMI	RGGWCCY	2 cut(s)	418, 1710
Psp124BI	GAGCTC	1 cut(s)	297
Psp5II	RGGWCCY	2 cut(s)	418, 1710
PspN4I	GGNNCC	2 cut(s)	419, 420
PspPI	GGNCC	2 cut(s)	418, 1710
PspPPI	RGGWCCY	2 cut(s)	418, 1710
RsaI	GTAC	2 cut(s)	269, 746
RsaNI	GTAC	2 cut(s)	268, 745
RseI	CAYNNNNRTG	2 cut(s)	1541, 1553
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	1046, 1670, 1758
SatI	GCNGC	2 cut(s)	988, 1188
Sau3AI	GATC	7 cut(s)	231, 447, 604, 849, 1069, 1213, 1374
Sau96I	GGNCC	2 cut(s)	418, 1710
SchI	GAGTC	2 cut(s)	520, 568
SduI	GDGCHC	1 cut(s)	297
SfaNI	GCATC	5 cut(s)	814, 975, 997, 1045, 1522
SfcI	CTRYAG	2 cut(s)	565, 1473
Sfr274I	CTCGAG	1 cut(s)	364
SinI	GGWCC	2 cut(s)	418, 1710
SlaI	CTCGAG	1 cut(s)	364
SmiMI	CAYNNNNRTG	2 cut(s)	1541, 1553
SmlI	CTYRAG	2 cut(s)	290, 364
SmoI	CTYRAG	2 cut(s)	290, 364
Sse9I	AATT	6 cut(s)	622, 1303, 1359, 1384, 1431, 1611
SsiI	CCGC	1 cut(s)	988
SspI	AATATT	3 cut(s)	402, 654, 1492
SspMI	CTAG	4 cut(s)	591, 723, 914, 1765
SstI	GAGCTC	1 cut(s)	297
TaaI	ACNGT	5 cut(s)	272, 411, 637, 887, 1477
TaqI	TCGA	5 cut(s)	365, 375, 1082, 1233, 1530
TasI	AATT	6 cut(s)	622, 1303, 1359, 1384, 1431, 1611
TatI	WGTACW	2 cut(s)	267, 744
TauI	GCSGC	1 cut(s)	990
TfiI	GAWTC	4 cut(s)	328, 479, 910, 1688
Tru1I	TTAA	3 cut(s)	1046, 1670, 1758
Tru9I	TTAA	3 cut(s)	1046, 1670, 1758
TscAI	CASTG	5 cut(s)	22, 277, 457, 1017, 1297
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	1 cut(s)	1187
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	5 cut(s)	423, 521, 705, 713, 1046
TspRI	CASTG	5 cut(s)	22, 277, 457, 1017, 1297
VpaK11BI	GGWCC	2 cut(s)	418, 1710
XbaI	TCTAGA	1 cut(s)	722
XhoI	CTCGAG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	1446
XspI	CTAG	4 cut(s)	591, 723, 914, 1765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.