Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009629.1

Orthogroup ID

OG0009511

Physical Location & Seq

Genomic Coordinates Forward (+)

51142 .. 51510

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009629.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggcaatactctccactgagttattgcctcatagcttccacactacctcccaactcaaacccacttcccattcccaccaccccactgctttgagttgtagaccttcttcttcttcctcctcttcaatctcaaatggcagaaacaacacctccagaaacctaacaagggtgtctgtctctgctgaaccaaaaccaacacacttgcaaagccatgattacaaagagacccacttgatcaaagtcctcaacaggtcttgcaaagcaggccagtacaatgaagccgtctactttcttgagctcatggtcaacaagggctacaagcctgatgtgattctctgcaccaagctcatcaaagggcatcttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

122

Amino Acids

13.55

Weight (kDa)

9.44

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04760 AT3G04760
fragaria_vesca	FvH4_6g01920
malus_domestica	MD04G1230300.v1.1 MD12G1247200.v1.1 MD12G1247400.v1.1
prunus_persica	Prupe.6G350200_v2.0.a1
pyrus_communis	pycom04g20420
rosa_chinensis	RchiOBHm_Chr3g0449651
rosa_laevigata	RLG00000025811
rosa_multiflora	Rmu_co8354861.1_g000001 Rmu_sc0007357.1_g000002 Rmu_sc0009629.1_g000012 Rmu_sc0009629.1_g000013 Rmu_sc0010999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427550
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh3AG020600 Rh3BG021300 Rh3CG019800 Rh3DG021100
rosa_wichuraiana	Rw3G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	100, 285
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	126
AluBI	AGCT	3 cut(s)	36, 298, 346
AluI	AGCT	3 cut(s)	36, 298, 346
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	181, 218
AoxI	GGCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	91, 123
Bbv12I	GWGCWC	1 cut(s)	300
BceAI	ACGGC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	181, 218
BpmI	CTGGAG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	181, 218
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	181, 218
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	15, 84
Cac8I	GCNNGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	212, 301
CviJI	RGCY	8 cut(s)	36, 210, 267, 281, 298, 315, 322, 346
CviKI_1	RGCY	8 cut(s)	36, 210, 267, 281, 298, 315, 322, 346
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	2 cut(s)	215, 304
FaiI	YATR	3 cut(s)	33, 213, 302
FalI	AAGNNNNNCTT	1 cut(s)	345
FatI	CATG	2 cut(s)	211, 300
FbaI	TGATCA	1 cut(s)	234
FblI	GTMKAC	2 cut(s)	100, 285
FriOI	GRGCYC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	215, 304
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	331
Hpy166II	GTNNAC	3 cut(s)	101, 286, 307
Hpy188III	TCNNGA	3 cut(s)	153, 293, 362
Hpy8I	GTNNAC	3 cut(s)	101, 286, 307
HpyAV	CCTTC	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	205, 258, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	215, 304
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	234
LpnPI	CCDG	5 cut(s)	166, 235, 249, 281, 336
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	4 cut(s)	99, 102, 105, 114
MhlI	GDGCHC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	39, 58, 127, 130, 160, 254
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	2 cut(s)	215, 304
PfeI	GAWTC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	300
Sau3AI	GATC	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	8 cut(s)	38, 50, 106, 152, 162, 254, 300, 348
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	300
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	2 cut(s)	22, 91
TspDTI	ATGAA	1 cut(s)	291
TspRI	CASTG	2 cut(s)	22, 91
XmiI	GTMKAC	2 cut(s)	100, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.